Gene annotation
Transcriptome id Sobic.002G141200.3,Sobic.002G141200.4,Sobic.002G141200.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6QB96 , A0A1B6QB89 , A0A1W0W3Y5
Pfam PF05965
Panther DB PTHR22715 PTHR22715:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT1G26330 : DNA binding
RAP-DB (Rice) LOC_Os09g01360.1 : expressed protein
MaizeGDB (Corn) Zm00025a013462
Brachypodium KQJ81391 , KQJ81390 , KQJ81393 , KQJ81392 , PNT60479 , PNT60478
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G363800 expressed protein -
2 Sobic.004G063300 expressed protein -
3 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
4 Sobic.009G008200 STE_PAK_Ste20++TranslationKinase_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
5 Sobic.003G023200 DNA repair protein Rad51, putative, expressed K10870: RAD51L2, RAD51-like protein 2
6 Sobic.002G066800 RNA ligase isoform 1, putative, expressed -
7 Sobic.007G186400 resistance protein, putative, expressed -
8 Sobic.001G191900 mitochondrial carrier protein, putative, expressed K15109: SLC25A20_29, CACT, CACL, solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29
9 Sobic.006G126800 expressed protein K10730: ATP-dependent DNA helicase Q4
10 Sobic.001G139900 CBS domain containing protein, expressed K16302: metal transporter CNNM
11 Sobic.002G078100 PPR repeat domain containing protein, putative, expressed -
12 Sobic.004G322300 nucleotide binding protein, putative, expressed K03351: anaphase-promoting complex subunit 4
13 Sobic.004G064600 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
14 Sobic.002G296400 E3 ubiquitin-protein ligase HERC2, putative, expressed -
15 Sobic.003G301800 "C3 PTPC, unknown so far"(PubMedID : 2308851)@phosphoenolphyruvate carboxylase(PubMedID : 26904072)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
16 Sobic.003G388000 tetratricopeptide repeat domain containing protein, expressed K03350: APC3, anaphase-promoting complex subunit 3
17 Sobic.K040800 formin-like protein 20, putative, expressed -
18 Sobic.003G183466 - -
19 Sobic.001G323400 expressed protein -
20 Sobic.009G120400 methyltransferase, putative, expressed -


Gene co-expression network
sample Sobic002G141200 Sobic002G141200 Sobic002G363800 Sobic002G363800 Sobic002G141200--Sobic002G363800 Sobic004G063300 Sobic004G063300 Sobic002G141200--Sobic004G063300 Sobic002G426100 Sobic002G426100 Sobic002G141200--Sobic002G426100 Sobic009G008200 Sobic009G008200 Sobic002G141200--Sobic009G008200 Sobic003G023200 Sobic003G023200 Sobic002G141200--Sobic003G023200 Sobic002G066800 Sobic002G066800 Sobic002G141200--Sobic002G066800 Sobic007G186400 Sobic007G186400 Sobic002G141200--Sobic007G186400 Sobic001G191900 Sobic001G191900 Sobic002G141200--Sobic001G191900 Sobic006G126800 Sobic006G126800 Sobic002G141200--Sobic006G126800 Sobic002G296400 Sobic002G296400 Sobic002G363800--Sobic002G296400 Sobic002G371600 Sobic002G371600 Sobic002G363800--Sobic002G371600 Sobic001G125500 Sobic001G125500 Sobic002G363800--Sobic001G125500 Sobic001G097900 Sobic001G097900 Sobic002G363800--Sobic001G097900 Sobic003G256800 Sobic003G256800 Sobic002G363800--Sobic003G256800 Sobic008G092800 Sobic008G092800 Sobic002G363800--Sobic008G092800 Sobic007G145400 Sobic007G145400 Sobic002G363800--Sobic007G145400 Sobic001G340000 Sobic001G340000 Sobic002G363800--Sobic001G340000 Sobic003G230600 Sobic003G230600 Sobic002G363800--Sobic003G230600 Sobic010G038900 Sobic010G038900 Sobic004G063300--Sobic010G038900 Sobic004G063300--Sobic009G008200 Sobic004G063300--Sobic002G066800 Sobic004G350200 Sobic004G350200 Sobic004G063300--Sobic004G350200 Sobic004G063300--Sobic002G141200 Sobic007G034200 Sobic007G034200 Sobic004G063300--Sobic007G034200 Sobic002G322400 Sobic002G322400 Sobic004G063300--Sobic002G322400 Sobic001G051400 Sobic001G051400 Sobic004G063300--Sobic001G051400 Sobic002G274700 Sobic002G274700 Sobic004G063300--Sobic002G274700 Sobic009G120400 Sobic009G120400 Sobic002G426100--Sobic009G120400 Sobic008G111600 Sobic008G111600 Sobic002G426100--Sobic008G111600 Sobic006G181800 Sobic006G181800 Sobic002G426100--Sobic006G181800 Sobic002G078100 Sobic002G078100 Sobic002G426100--Sobic002G078100 Sobic002G043000 Sobic002G043000 Sobic002G426100--Sobic002G043000 Sobic006G017800 Sobic006G017800 Sobic002G426100--Sobic006G017800 Sobic002G426100--Sobic002G066800 Sobic002G426100--Sobic007G186400 Sobic004G129500 Sobic004G129500 Sobic002G426100--Sobic004G129500 Sobic009G008200--Sobic002G296400 Sobic009G008200--Sobic004G063300 Sobic002G076500 Sobic002G076500 Sobic009G008200--Sobic002G076500 Sobic006G210700 Sobic006G210700 Sobic009G008200--Sobic006G210700 Sobic009G008200--Sobic002G066800 Sobic009G008200--Sobic002G141200 Sobic009G008200--Sobic001G097900 Sobic009G008200--Sobic001G051400 Sobic009G008200--Sobic003G023200 Sobic003G023200--Sobic002G066800 Sobic006G212900 Sobic006G212900 Sobic003G023200--Sobic006G212900 Sobic010G250000 Sobic010G250000 Sobic003G023200--Sobic010G250000 Sobic003G023200--Sobic003G256800 Sobic003G023200--Sobic001G097900 Sobic005G087300 Sobic005G087300 Sobic003G023200--Sobic005G087300 Sobic003G023200--Sobic002G426100 Sobic001G229300 Sobic001G229300 Sobic003G023200--Sobic001G229300 Sobic007G122700 Sobic007G122700 Sobic003G023200--Sobic007G122700 Sobic002G066800--Sobic001G051400 Sobic002G066800--Sobic005G087300 Sobic002G066800--Sobic002G078100 Sobic003G393200 Sobic003G393200 Sobic002G066800--Sobic003G393200 Sobic002G066800--Sobic010G038900 Sobic010G018900 Sobic010G018900 Sobic002G066800--Sobic010G018900 Sobic003G010900 Sobic003G010900 Sobic002G066800--Sobic003G010900 Sobic006G191200 Sobic006G191200 Sobic002G066800--Sobic006G191200 Sobic002G066800--Sobic003G023200 Sobic007G186400--Sobic009G120400 Sobic004G215600 Sobic004G215600 Sobic007G186400--Sobic004G215600 Sobic002G308000 Sobic002G308000 Sobic007G186400--Sobic002G308000 Sobic004G000400 Sobic004G000400 Sobic007G186400--Sobic004G000400 Sobic008G047500 Sobic008G047500 Sobic007G186400--Sobic008G047500 Sobic002G173400 Sobic002G173400 Sobic007G186400--Sobic002G173400 Sobic006G106600 Sobic006G106600 Sobic007G186400--Sobic006G106600 Sobic007G186400--Sobic002G426100 Sobic007G105700 Sobic007G105700 Sobic007G186400--Sobic007G105700 Sobic001G191900--Sobic006G106600 Sobic001G191900--Sobic001G229300 Sobic004G277400 Sobic004G277400 Sobic001G191900--Sobic004G277400 Sobic002G153400 Sobic002G153400 Sobic001G191900--Sobic002G153400 Sobic007G022700 Sobic007G022700 Sobic001G191900--Sobic007G022700 Sobic007G051400 Sobic007G051400 Sobic001G191900--Sobic007G051400 Sobic001G191900--Sobic009G120400 Sobic004G354100 Sobic004G354100 Sobic001G191900--Sobic004G354100 Sobic001G191900--Sobic002G426100 Sobic009G081800 Sobic009G081800 Sobic006G126800--Sobic009G081800 Sobic010G252200 Sobic010G252200 Sobic006G126800--Sobic010G252200 Sobic010G269800 Sobic010G269800 Sobic006G126800--Sobic010G269800 Sobic006G126800--Sobic002G426100 Sobic006G127200 Sobic006G127200 Sobic006G126800--Sobic006G127200 Sobic006G126800--Sobic002G173400 Sobic002G095300 Sobic002G095300 Sobic006G126800--Sobic002G095300 Sobic002G286632 Sobic002G286632 Sobic006G126800--Sobic002G286632 Sobic005G210500 Sobic005G210500 Sobic006G126800--Sobic005G210500
Octagon: transcription factors


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