Gene annotation
Transcriptome id Sobic.001G139900.2
Synonym Sb01g012180
Functional annotation CBS domain containing protein, expressed
UniProt A0A1Z5S5W9
Pfam PF01595
Panther DB PTHR12064 PTHR12064:SF30
NCBI CDD KOG2118; Predicted membrane protein, contains two CBS domains
KEGG Orthology K16302; metal transporter CNNM
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G14520 : CBS domain-containing protein with a domain of unknown function (DUF21)
RAP-DB (Rice) LOC_Os03g47120.1 : CBS domain containing protein, expressed
MaizeGDB (Corn) Zm00025a000344 , Zm00025a053490 , Zm00025a007488
Brachypodium KQK13810
Barley HORVU4Hr1G003430.10 , HORVU4Hr1G003430.8 , HORVU4Hr1G003430.9 , HORVU4Hr1G003430.6 , HORVU4Hr1G003430.7 , HORVU4Hr1G003430.4 , HORVU4Hr1G003430.5 , HORVU4Hr1G003430.2 , HORVU4Hr1G003430.3 , HORVU4Hr1G003430.1
Wheat TraesCS4A02G291600 , TraesCS4B02G022400 , TraesCS4A02G291600 , TraesCS4A02G291600 , TraesCS4D02G020200
Populus PNT57228 , PNT57226 , PNT57227 , PNT57224 , PNT57225


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cDNA sequences
Sobic.001G139900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G080600 expressed protein -
2 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
3 Sobic.004G129500 expressed protein -
4 Sobic.009G081800 helicase, putative, expressed K11273: DDX11, CHL1, chromosome transmission fidelity protein 1
5 Sobic.001G486600 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
6 Sobic.K040800 formin-like protein 20, putative, expressed -
7 Sobic.001G381500 lung seven transmembrane domain containing protein, putative, expressed -
8 Sobic.010G252200 PPR repeat domain containing protein, putative, expressed -
9 Sobic.004G064600 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
10 Sobic.002G066800 RNA ligase isoform 1, putative, expressed -
11 Sobic.006G127200 kelch repeat protein, putative, expressed -
12 Sobic.001G117900 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
13 Sobic.005G210500 - K10901: BLM, RECQL3, bloom syndrome protein
14 Sobic.001G348000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nodulation protein-related, putative, expressed -
15 Sobic.001G239900 amino acid permease, putative, expressed -
16 Sobic.001G248400 expressed protein -
17 Sobic.008G047500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.003G041400 aminoacyl-tRNA synthetase, putative, expressed -
19 Sobic.006G271000 mis12 protein, expressed -
20 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta


Gene co-expression network
sample Sobic001G139900 Sobic001G139900 Sobic009G080600 Sobic009G080600 Sobic001G139900--Sobic009G080600 Sobic002G426100 Sobic002G426100 Sobic001G139900--Sobic002G426100 Sobic004G129500 Sobic004G129500 Sobic001G139900--Sobic004G129500 Sobic009G081800 Sobic009G081800 Sobic001G139900--Sobic009G081800 Sobic001G486600 Sobic001G486600 Sobic001G139900--Sobic001G486600 SobicK040800 SobicK040800 Sobic001G139900--SobicK040800 Sobic001G381500 Sobic001G381500 Sobic001G139900--Sobic001G381500 Sobic010G252200 Sobic010G252200 Sobic001G139900--Sobic010G252200 Sobic004G064600 Sobic004G064600 Sobic001G139900--Sobic004G064600 Sobic010G269800 Sobic010G269800 Sobic009G080600--Sobic010G269800 Sobic001G248400 Sobic001G248400 Sobic009G080600--Sobic001G248400 Sobic007G102000 Sobic007G102000 Sobic009G080600--Sobic007G102000 Sobic002G308000 Sobic002G308000 Sobic009G080600--Sobic002G308000 Sobic009G080600--Sobic001G139900 Sobic002G192900 Sobic002G192900 Sobic009G080600--Sobic002G192900 Sobic002G390800 Sobic002G390800 Sobic009G080600--Sobic002G390800 Sobic009G080600--SobicK040800 Sobic008G004900 Sobic008G004900 Sobic009G080600--Sobic008G004900 Sobic009G120400 Sobic009G120400 Sobic002G426100--Sobic009G120400 Sobic008G111600 Sobic008G111600 Sobic002G426100--Sobic008G111600 Sobic006G181800 Sobic006G181800 Sobic002G426100--Sobic006G181800 Sobic002G078100 Sobic002G078100 Sobic002G426100--Sobic002G078100 Sobic002G043000 Sobic002G043000 Sobic002G426100--Sobic002G043000 Sobic006G017800 Sobic006G017800 Sobic002G426100--Sobic006G017800 Sobic002G066800 Sobic002G066800 Sobic002G426100--Sobic002G066800 Sobic007G186400 Sobic007G186400 Sobic002G426100--Sobic007G186400 Sobic002G426100--Sobic004G129500 Sobic007G036800 Sobic007G036800 Sobic004G129500--Sobic007G036800 Sobic010G103500 Sobic010G103500 Sobic004G129500--Sobic010G103500 Sobic001G296800 Sobic001G296800 Sobic004G129500--Sobic001G296800 Sobic003G028400 Sobic003G028400 Sobic004G129500--Sobic003G028400 Sobic003G411700 Sobic003G411700 Sobic004G129500--Sobic003G411700 Sobic004G129500--Sobic002G426100 Sobic002G123600 Sobic002G123600 Sobic004G129500--Sobic002G123600 Sobic004G129500--Sobic002G043000 Sobic001G361200 Sobic001G361200 Sobic004G129500--Sobic001G361200 Sobic006G126800 Sobic006G126800 Sobic009G081800--Sobic006G126800 Sobic009G081800--Sobic010G252200 Sobic003G041400 Sobic003G041400 Sobic009G081800--Sobic003G041400 Sobic006G127200 Sobic006G127200 Sobic009G081800--Sobic006G127200 Sobic001G530100 Sobic001G530100 Sobic009G081800--Sobic001G530100 Sobic001G239900 Sobic001G239900 Sobic009G081800--Sobic001G239900 Sobic009G081800--Sobic010G269800 Sobic005G210500 Sobic005G210500 Sobic009G081800--Sobic005G210500 Sobic006G119300 Sobic006G119300 Sobic009G081800--Sobic006G119300 Sobic001G486600--Sobic005G210500 Sobic008G131900 Sobic008G131900 Sobic001G486600--Sobic008G131900 Sobic010G038200 Sobic010G038200 Sobic001G486600--Sobic010G038200 Sobic002G173400 Sobic002G173400 Sobic001G486600--Sobic002G173400 Sobic001G486600--Sobic006G119300 Sobic008G047500 Sobic008G047500 Sobic001G486600--Sobic008G047500 Sobic010G030000 Sobic010G030000 Sobic001G486600--Sobic010G030000 Sobic001G486600--Sobic010G252200 Sobic003G204100 Sobic003G204100 Sobic001G486600--Sobic003G204100 SobicK040800--Sobic007G102000 SobicK040800--Sobic009G080600 Sobic009G214500 Sobic009G214500 SobicK040800--Sobic009G214500 SobicK040800--Sobic001G486600 SobicK040800--Sobic005G210500 Sobic001G117900 Sobic001G117900 SobicK040800--Sobic001G117900 SobicK040800--Sobic008G004900 SobicK040800--Sobic010G038200 SobicK040800--Sobic002G308000 Sobic001G154300 Sobic001G154300 Sobic001G381500--Sobic001G154300 Sobic001G381500--Sobic002G308000 Sobic001G433600 Sobic001G433600 Sobic001G381500--Sobic001G433600 Sobic007G189100 Sobic007G189100 Sobic001G381500--Sobic007G189100 Sobic002G193500 Sobic002G193500 Sobic001G381500--Sobic002G193500 Sobic001G381500--Sobic009G080600 Sobic001G381500--Sobic010G269800 Sobic002G392400 Sobic002G392400 Sobic001G381500--Sobic002G392400 Sobic004G306100 Sobic004G306100 Sobic001G381500--Sobic004G306100 Sobic010G252200--Sobic006G126800 Sobic010G252200--Sobic005G210500 Sobic010G252200--Sobic009G081800 Sobic010G252200--Sobic001G486600 Sobic003G184666 Sobic003G184666 Sobic010G252200--Sobic003G184666 Sobic010G252200--Sobic006G119300 Sobic001G268300 Sobic001G268300 Sobic010G252200--Sobic001G268300 Sobic002G362200 Sobic002G362200 Sobic010G252200--Sobic002G362200 Sobic003G045450 Sobic003G045450 Sobic010G252200--Sobic003G045450 Sobic006G095000 Sobic006G095000 Sobic004G064600--Sobic006G095000 Sobic004G064600--Sobic002G192900 Sobic004G064600--Sobic008G047500 Sobic001G323400 Sobic001G323400 Sobic004G064600--Sobic001G323400 Sobic001G082800 Sobic001G082800 Sobic004G064600--Sobic001G082800 Sobic004G064600--Sobic002G390800 Sobic004G064600--Sobic008G004900 Sobic004G064600--Sobic007G186400 Sobic004G064600--Sobic002G308000
Octagon: transcription factors


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