Gene annotation
Transcriptome id Sobic.001G239900.1
Synonym Sb01g021240, CAT3
Functional annotation amino acid permease, putative, expressed
UniProt A0A1Z5S723
Pfam PF13906 PF13520
Panther DB PTHR11785 PTHR11785:SF414
NCBI CDD KOG1286; Amino acid transporters
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0015171amino acid transmembrane transporter activity GO:0003333amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT1G58030 : cationic amino acid transporter 2
RAP-DB (Rice) LOC_Os10g30090.1 : amino acid permease, putative, expressed
MaizeGDB (Corn) Zm00025a017760
Brachypodium KQJ96810 , KQJ96811 , KQJ96807
Barley HORVU1Hr1G036060.61 , HORVU1Hr1G036060.60 , HORVU1Hr1G036060.8 , HORVU1Hr1G036060.9 , HORVU1Hr1G036060.1 , HORVU1Hr1G036060.2 , HORVU1Hr1G036060.3 , HORVU1Hr1G036060.4 , HORVU1Hr1G036060.5 , HORVU1Hr1G036060.7 , HORVU1Hr1G036060.49 , HORVU1Hr1G036060.48 , HORVU1Hr1G036060.41 , HORVU1Hr1G036060.40 , HORVU1Hr1G036060.43 , HORVU1Hr1G036060.42 , HORVU1Hr1G036060.45 , HORVU1Hr1G036060.44 , HORVU1Hr1G036060.47 , HORVU1Hr1G036060.46 , HORVU1Hr1G036060.58 , HORVU1Hr1G036060.22 , HORVU1Hr1G036060.56 , HORVU1Hr1G036060.57 , HORVU1Hr1G036060.54 , HORVU1Hr1G036060.55 , HORVU1Hr1G036060.52 , HORVU1Hr1G036060.50 , HORVU1Hr1G036060.51 , HORVU1Hr1G036060.20 , HORVU1Hr1G036060.26 , HORVU1Hr1G036060.25 , HORVU1Hr1G036060.24 , HORVU1Hr1G036060.29 , HORVU1Hr1G036060.28 , HORVU1Hr1G036060.23 , HORVU1Hr1G036060.21 , HORVU1Hr1G036060.27 , HORVU1Hr1G036060.38 , HORVU1Hr1G036060.39 , HORVU1Hr1G036060.30 , HORVU1Hr1G036060.31 , HORVU1Hr1G036060.32 , HORVU1Hr1G036060.33 , HORVU1Hr1G036060.34 , HORVU1Hr1G036060.35 , HORVU1Hr1G036060.36 , HORVU1Hr1G036060.37 , HORVU1Hr1G036060.59 , HORVU1Hr1G036060.53 , HORVU1Hr1G036060.12 , HORVU1Hr1G036060.13 , HORVU1Hr1G036060.10 , HORVU1Hr1G036060.11 , HORVU1Hr1G036060.16 , HORVU1Hr1G036060.14 , HORVU1Hr1G036060.15 , HORVU1Hr1G036060.18 , HORVU1Hr1G036060.19
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G192500 nodulin, putative, expressed -
2 Sobic.009G081800 helicase, putative, expressed K11273: DDX11, CHL1, chromosome transmission fidelity protein 1
3 Sobic.006G126800 expressed protein K10730: ATP-dependent DNA helicase Q4
4 Sobic.003G022000 phospho-N-acetylmuramoyl-pentapeptide-transferase, putative, expressed K01000: phospho-N-acetylmuramoyl-pentapeptide-transferase
5 Sobic.009G103400 - -
6 Sobic.002G201700 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
7 Sobic.009G244900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cycloartenol-C-24-methyltransferase 1, putative, expressed K00559: SMT1, sterol 24-C-methyltransferase
8 Sobic.002G310300 - -
9 Sobic.002G167100 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
10 Sobic.001G500400 kinesin motor domain containing protein, expressed -
11 Sobic.010G252200 PPR repeat domain containing protein, putative, expressed -
12 Sobic.001G139900 CBS domain containing protein, expressed K16302: metal transporter CNNM
13 Sobic.002G158500 ankyrin, putative, expressed -
14 Sobic.003G041400 aminoacyl-tRNA synthetase, putative, expressed -
15 Sobic.008G017700 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
16 Sobic.002G268700 hydroxymethylglutaryl-CoA synthase, putative, expressed K01641: hydroxymethylglutaryl-CoA synthase
17 Sobic.007G112100 enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed K00208: enoyl-[acyl-carrier protein] reductase I
18 Sobic.004G032900 wee1-like protein kinase, putative, expressed K06632: wee1-like protein kinase
19 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
20 Sobic.005G210500 - K10901: BLM, RECQL3, bloom syndrome protein


Gene co-expression network
sample Sobic001G239900 Sobic001G239900 Sobic007G192500 Sobic007G192500 Sobic001G239900--Sobic007G192500 Sobic009G081800 Sobic009G081800 Sobic001G239900--Sobic009G081800 Sobic006G126800 Sobic006G126800 Sobic001G239900--Sobic006G126800 Sobic003G022000 Sobic003G022000 Sobic001G239900--Sobic003G022000 Sobic009G103400 Sobic009G103400 Sobic001G239900--Sobic009G103400 Sobic002G201700 Sobic002G201700 Sobic001G239900--Sobic002G201700 Sobic009G244900 Sobic009G244900 Sobic001G239900--Sobic009G244900 Sobic002G310300 Sobic002G310300 Sobic001G239900--Sobic002G310300 Sobic002G167100 Sobic002G167100 Sobic001G239900--Sobic002G167100 Sobic007G192500--Sobic002G201700 Sobic007G192500--Sobic002G167100 Sobic002G309100 Sobic002G309100 Sobic007G192500--Sobic002G309100 Sobic007G192500--Sobic009G244900 Sobic007G192500--Sobic003G022000 Sobic010G062900 Sobic010G062900 Sobic007G192500--Sobic010G062900 Sobic009G025700 Sobic009G025700 Sobic007G192500--Sobic009G025700 Sobic001G499500 Sobic001G499500 Sobic007G192500--Sobic001G499500 Sobic007G192500--Sobic001G239900 Sobic009G081800--Sobic006G126800 Sobic010G252200 Sobic010G252200 Sobic009G081800--Sobic010G252200 Sobic003G041400 Sobic003G041400 Sobic009G081800--Sobic003G041400 Sobic006G127200 Sobic006G127200 Sobic009G081800--Sobic006G127200 Sobic001G530100 Sobic001G530100 Sobic009G081800--Sobic001G530100 Sobic009G081800--Sobic001G239900 Sobic010G269800 Sobic010G269800 Sobic009G081800--Sobic010G269800 Sobic005G210500 Sobic005G210500 Sobic009G081800--Sobic005G210500 Sobic006G119300 Sobic006G119300 Sobic009G081800--Sobic006G119300 Sobic006G126800--Sobic009G081800 Sobic006G126800--Sobic010G252200 Sobic006G126800--Sobic010G269800 Sobic002G426100 Sobic002G426100 Sobic006G126800--Sobic002G426100 Sobic006G126800--Sobic006G127200 Sobic002G173400 Sobic002G173400 Sobic006G126800--Sobic002G173400 Sobic002G095300 Sobic002G095300 Sobic006G126800--Sobic002G095300 Sobic002G286632 Sobic002G286632 Sobic006G126800--Sobic002G286632 Sobic006G126800--Sobic005G210500 Sobic003G022000--Sobic002G167100 Sobic007G086600 Sobic007G086600 Sobic003G022000--Sobic007G086600 Sobic003G022000--Sobic002G201700 Sobic003G022000--Sobic007G192500 Sobic003G022000--Sobic002G309100 Sobic003G022000--Sobic001G499500 Sobic001G385000 Sobic001G385000 Sobic003G022000--Sobic001G385000 Sobic001G117900 Sobic001G117900 Sobic003G022000--Sobic001G117900 Sobic003G022000--Sobic009G025700 Sobic009G103400--Sobic001G239900 Sobic009G103400--Sobic009G244900 Sobic008G017700 Sobic008G017700 Sobic009G103400--Sobic008G017700 Sobic009G103400--Sobic007G192500 Sobic002G186900 Sobic002G186900 Sobic009G103400--Sobic002G186900 Sobic001G392200 Sobic001G392200 Sobic009G103400--Sobic001G392200 Sobic004G032900 Sobic004G032900 Sobic009G103400--Sobic004G032900 Sobic009G219700 Sobic009G219700 Sobic009G103400--Sobic009G219700 Sobic001G261400 Sobic001G261400 Sobic009G103400--Sobic001G261400 Sobic002G201700--Sobic002G167100 Sobic002G201700--Sobic009G025700 Sobic002G201700--Sobic007G192500 Sobic003G013700 Sobic003G013700 Sobic002G201700--Sobic003G013700 Sobic004G261800 Sobic004G261800 Sobic002G201700--Sobic004G261800 Sobic009G042000 Sobic009G042000 Sobic002G201700--Sobic009G042000 Sobic002G201700--Sobic003G022000 Sobic010G253200 Sobic010G253200 Sobic002G201700--Sobic010G253200 Sobic004G284800 Sobic004G284800 Sobic002G201700--Sobic004G284800 Sobic009G244900--Sobic007G192500 Sobic009G244900--Sobic002G201700 Sobic009G244900--Sobic004G261800 Sobic010G101600 Sobic010G101600 Sobic009G244900--Sobic010G101600 Sobic009G244900--Sobic002G167100 Sobic002G153000 Sobic002G153000 Sobic009G244900--Sobic002G153000 Sobic001G135200 Sobic001G135200 Sobic009G244900--Sobic001G135200 Sobic010G250300 Sobic010G250300 Sobic009G244900--Sobic010G250300 Sobic004G069400 Sobic004G069400 Sobic009G244900--Sobic004G069400 Sobic001G500400 Sobic001G500400 Sobic002G310300--Sobic001G500400 Sobic003G118100 Sobic003G118100 Sobic002G310300--Sobic003G118100 Sobic001G323400 Sobic001G323400 Sobic002G310300--Sobic001G323400 Sobic002G297500 Sobic002G297500 Sobic002G310300--Sobic002G297500 Sobic004G053900 Sobic004G053900 Sobic002G310300--Sobic004G053900 Sobic006G035600 Sobic006G035600 Sobic002G310300--Sobic006G035600 Sobic010G042600 Sobic010G042600 Sobic002G310300--Sobic010G042600 Sobic002G310300--Sobic010G269800 Sobic010G051100 Sobic010G051100 Sobic002G310300--Sobic010G051100 Sobic002G167100--Sobic002G201700 Sobic002G167100--Sobic003G022000 Sobic002G167100--Sobic009G025700 Sobic003G372200 Sobic003G372200 Sobic002G167100--Sobic003G372200 Sobic002G167100--Sobic007G192500 Sobic002G167100--Sobic001G385000 Sobic002G167100--Sobic007G086600 Sobic002G167100--Sobic009G042000 Sobic010G086300 Sobic010G086300 Sobic002G167100--Sobic010G086300
Octagon: transcription factors


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