Gene annotation
Transcriptome id Sobic.010G252200.1
Synonym Sb10g029040
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5Z972
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF845
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G21705 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os07g40750.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a017490
Brachypodium KQJ97322
Barley HORVU1Hr1G045170.5 , HORVU1Hr1G045170.6 , HORVU1Hr1G045170.7 , HORVU1Hr1G045170.1 , HORVU1Hr1G045170.3
Wheat TraesCS1B02G188100 , TraesCS1A02G168800 , TraesCS1D02G166800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G126800 expressed protein K10730: ATP-dependent DNA helicase Q4
2 Sobic.005G210500 - K10901: BLM, RECQL3, bloom syndrome protein
3 Sobic.009G081800 helicase, putative, expressed K11273: DDX11, CHL1, chromosome transmission fidelity protein 1
4 Sobic.001G486600 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
5 Sobic.003G184666 - -
6 Sobic.006G119300 ribonuclease H2 subunit B, putative, expressed K10744: ribonuclease H2 subunit B
7 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
8 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
9 Sobic.003G045450 - -
10 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
11 Sobic.007G125300 BRCA1 C Terminus domain containing protein, expressed -
12 Sobic.003G147500 PHS1, putative, expressed K14165: atypical dual specificity phosphatase
13 Sobic.006G081700 - -
14 Sobic.001G140700 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
15 Sobic.007G187700 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
16 Sobic.002G173400 expressed protein -
17 Sobic.004G000400 OsPDIL1-4 protein disulfide isomerase PDIL1-4, expressed K09580: PDIA1, protein disulfide-isomerase A1
18 Sobic.010G250400 OsSub52 - Putative Subtilisin homologue, expressed -
19 Sobic.010G038200 CDT1A - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
20 Sobic.003G041400 aminoacyl-tRNA synthetase, putative, expressed -


Gene co-expression network
sample Sobic010G252200 Sobic010G252200 Sobic006G126800 Sobic006G126800 Sobic010G252200--Sobic006G126800 Sobic005G210500 Sobic005G210500 Sobic010G252200--Sobic005G210500 Sobic009G081800 Sobic009G081800 Sobic010G252200--Sobic009G081800 Sobic001G486600 Sobic001G486600 Sobic010G252200--Sobic001G486600 Sobic003G184666 Sobic003G184666 Sobic010G252200--Sobic003G184666 Sobic006G119300 Sobic006G119300 Sobic010G252200--Sobic006G119300 Sobic001G268300 Sobic001G268300 Sobic010G252200--Sobic001G268300 Sobic002G362200 Sobic002G362200 Sobic010G252200--Sobic002G362200 Sobic003G045450 Sobic003G045450 Sobic010G252200--Sobic003G045450 Sobic006G126800--Sobic009G081800 Sobic006G126800--Sobic010G252200 Sobic010G269800 Sobic010G269800 Sobic006G126800--Sobic010G269800 Sobic002G426100 Sobic002G426100 Sobic006G126800--Sobic002G426100 Sobic006G127200 Sobic006G127200 Sobic006G126800--Sobic006G127200 Sobic002G173400 Sobic002G173400 Sobic006G126800--Sobic002G173400 Sobic002G095300 Sobic002G095300 Sobic006G126800--Sobic002G095300 Sobic002G286632 Sobic002G286632 Sobic006G126800--Sobic002G286632 Sobic006G126800--Sobic005G210500 Sobic003G418400 Sobic003G418400 Sobic005G210500--Sobic003G418400 Sobic005G210500--Sobic001G486600 Sobic009G214500 Sobic009G214500 Sobic005G210500--Sobic009G214500 Sobic010G038200 Sobic010G038200 Sobic005G210500--Sobic010G038200 Sobic001G117900 Sobic001G117900 Sobic005G210500--Sobic001G117900 Sobic003G005500 Sobic003G005500 Sobic005G210500--Sobic003G005500 Sobic005G210500--Sobic010G252200 Sobic007G102300 Sobic007G102300 Sobic005G210500--Sobic007G102300 Sobic010G030000 Sobic010G030000 Sobic005G210500--Sobic010G030000 Sobic009G081800--Sobic006G126800 Sobic009G081800--Sobic010G252200 Sobic003G041400 Sobic003G041400 Sobic009G081800--Sobic003G041400 Sobic009G081800--Sobic006G127200 Sobic001G530100 Sobic001G530100 Sobic009G081800--Sobic001G530100 Sobic001G239900 Sobic001G239900 Sobic009G081800--Sobic001G239900 Sobic009G081800--Sobic010G269800 Sobic009G081800--Sobic005G210500 Sobic009G081800--Sobic006G119300 Sobic001G486600--Sobic005G210500 Sobic008G131900 Sobic008G131900 Sobic001G486600--Sobic008G131900 Sobic001G486600--Sobic010G038200 Sobic001G486600--Sobic002G173400 Sobic001G486600--Sobic006G119300 Sobic008G047500 Sobic008G047500 Sobic001G486600--Sobic008G047500 Sobic001G486600--Sobic010G030000 Sobic001G486600--Sobic010G252200 Sobic003G204100 Sobic003G204100 Sobic001G486600--Sobic003G204100 Sobic003G184666--Sobic010G252200 Sobic005G078700 Sobic005G078700 Sobic003G184666--Sobic005G078700 Sobic010G143600 Sobic010G143600 Sobic003G184666--Sobic010G143600 Sobic003G183466 Sobic003G183466 Sobic003G184666--Sobic003G183466 Sobic003G184666--Sobic006G126800 Sobic003G325900 Sobic003G325900 Sobic003G184666--Sobic003G325900 Sobic003G184666--Sobic003G045450 Sobic003G184666--Sobic002G362200 Sobic004G222150 Sobic004G222150 Sobic003G184666--Sobic004G222150 Sobic002G113400 Sobic002G113400 Sobic006G119300--Sobic002G113400 Sobic006G119300--Sobic001G486600 Sobic002G297500 Sobic002G297500 Sobic006G119300--Sobic002G297500 Sobic007G125300 Sobic007G125300 Sobic006G119300--Sobic007G125300 Sobic006G119300--Sobic010G252200 Sobic001G521100 Sobic001G521100 Sobic006G119300--Sobic001G521100 Sobic004G032900 Sobic004G032900 Sobic006G119300--Sobic004G032900 Sobic006G119300--Sobic005G210500 Sobic004G053900 Sobic004G053900 Sobic006G119300--Sobic004G053900 Sobic009G041800 Sobic009G041800 Sobic001G268300--Sobic009G041800 Sobic008G179000 Sobic008G179000 Sobic001G268300--Sobic008G179000 Sobic006G262800 Sobic006G262800 Sobic001G268300--Sobic006G262800 Sobic001G268300--Sobic002G362200 Sobic008G031200 Sobic008G031200 Sobic001G268300--Sobic008G031200 Sobic003G142400 Sobic003G142400 Sobic001G268300--Sobic003G142400 Sobic001G268300--Sobic010G252200 Sobic004G282500 Sobic004G282500 Sobic001G268300--Sobic004G282500 Sobic001G268300--Sobic005G078700 Sobic008G111600 Sobic008G111600 Sobic002G362200--Sobic008G111600 Sobic010G252700 Sobic010G252700 Sobic002G362200--Sobic010G252700 Sobic008G090000 Sobic008G090000 Sobic002G362200--Sobic008G090000 Sobic002G362200--Sobic008G179000 Sobic002G362200--Sobic002G426100 Sobic001G537400 Sobic001G537400 Sobic002G362200--Sobic001G537400 Sobic002G362200--Sobic001G268300 Sobic002G362200--Sobic008G031200 Sobic003G147500 Sobic003G147500 Sobic002G362200--Sobic003G147500 Sobic008G141900 Sobic008G141900 Sobic003G045450--Sobic008G141900 Sobic001G376501 Sobic001G376501 Sobic003G045450--Sobic001G376501 Sobic003G045450--Sobic003G204100 Sobic005G212201 Sobic005G212201 Sobic003G045450--Sobic005G212201 Sobic009G163400 Sobic009G163400 Sobic003G045450--Sobic009G163400 Sobic004G276000 Sobic004G276000 Sobic003G045450--Sobic004G276000 Sobic002G064800 Sobic002G064800 Sobic003G045450--Sobic002G064800 Sobic007G122700 Sobic007G122700 Sobic003G045450--Sobic007G122700 Sobic001G010500 Sobic001G010500 Sobic003G045450--Sobic001G010500
Octagon: transcription factors


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