Gene annotation
Transcriptome id Sobic.003G041400.2
Synonym Sb03g003685
Functional annotation aminoacyl-tRNA synthetase, putative, expressed
UniProt A0A1B6Q1C1
Pfam -
Panther DB PTHR14296 PTHR14296:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G18950 : DDT domain superfamily
RAP-DB (Rice) LOC_Os01g08550.1 : aminoacyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a023158
Brachypodium -
Barley -
Wheat TraesCS3A02G117400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G081800 helicase, putative, expressed K11273: DDX11, CHL1, chromosome transmission fidelity protein 1
2 Sobic.006G095300 expressed protein -
3 Sobic.005G210500 - K10901: BLM, RECQL3, bloom syndrome protein
4 Sobic.006G127200 kelch repeat protein, putative, expressed -
5 Sobic.006G119300 ribonuclease H2 subunit B, putative, expressed K10744: ribonuclease H2 subunit B
6 Sobic.004G350200 KH domain containing protein, putative, expressed K14944: RNA-binding protein Nova
7 Sobic.010G252200 PPR repeat domain containing protein, putative, expressed -
8 Sobic.010G257500 expressed protein -
9 Sobic.001G521100 POLD2 - Putative DNA polymerase delta complex subunit, expressed K02328: DNA polymerase delta subunit 2
10 Sobic.001G506300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@xyloglucan galactosyltransferase KATAMARI1, putative, expressed -
11 Sobic.003G320100 pentatricopeptide containing protein, putative, expressed -
12 Sobic.006G271000 mis12 protein, expressed -
13 Sobic.006G126800 expressed protein K10730: ATP-dependent DNA helicase Q4
14 Sobic.009G063800 ATP10 protein, expressed K18192: mitochondrial ATPase complex subunit ATP10
15 Sobic.010G018900 pentatricopeptide repeat domain containing protein, putative, expressed -
16 Sobic.005G068800 TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed K10728: topoisomerase (DNA) II binding protein 1
17 Sobic.006G081700 - -
18 Sobic.009G244900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cycloartenol-C-24-methyltransferase 1, putative, expressed K00559: SMT1, sterol 24-C-methyltransferase
19 Sobic.001G239900 amino acid permease, putative, expressed -
20 Sobic.001G486600 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4


Gene co-expression network
sample Sobic003G041400 Sobic003G041400 Sobic009G081800 Sobic009G081800 Sobic003G041400--Sobic009G081800 Sobic006G095300 Sobic006G095300 Sobic003G041400--Sobic006G095300 Sobic005G210500 Sobic005G210500 Sobic003G041400--Sobic005G210500 Sobic006G127200 Sobic006G127200 Sobic003G041400--Sobic006G127200 Sobic006G119300 Sobic006G119300 Sobic003G041400--Sobic006G119300 Sobic004G350200 Sobic004G350200 Sobic003G041400--Sobic004G350200 Sobic010G252200 Sobic010G252200 Sobic003G041400--Sobic010G252200 Sobic010G257500 Sobic010G257500 Sobic003G041400--Sobic010G257500 Sobic001G521100 Sobic001G521100 Sobic003G041400--Sobic001G521100 Sobic006G126800 Sobic006G126800 Sobic009G081800--Sobic006G126800 Sobic009G081800--Sobic010G252200 Sobic009G081800--Sobic003G041400 Sobic009G081800--Sobic006G127200 Sobic001G530100 Sobic001G530100 Sobic009G081800--Sobic001G530100 Sobic001G239900 Sobic001G239900 Sobic009G081800--Sobic001G239900 Sobic010G269800 Sobic010G269800 Sobic009G081800--Sobic010G269800 Sobic009G081800--Sobic005G210500 Sobic009G081800--Sobic006G119300 Sobic001G506300 Sobic001G506300 Sobic006G095300--Sobic001G506300 Sobic006G095300--Sobic003G041400 Sobic001G196800 Sobic001G196800 Sobic006G095300--Sobic001G196800 Sobic006G095300--Sobic006G127200 Sobic006G095300--Sobic001G521100 Sobic010G165800 Sobic010G165800 Sobic006G095300--Sobic010G165800 Sobic002G315400 Sobic002G315400 Sobic006G095300--Sobic002G315400 Sobic006G095300--Sobic010G257500 Sobic003G297200 Sobic003G297200 Sobic006G095300--Sobic003G297200 Sobic003G418400 Sobic003G418400 Sobic005G210500--Sobic003G418400 Sobic001G486600 Sobic001G486600 Sobic005G210500--Sobic001G486600 Sobic009G214500 Sobic009G214500 Sobic005G210500--Sobic009G214500 Sobic010G038200 Sobic010G038200 Sobic005G210500--Sobic010G038200 Sobic001G117900 Sobic001G117900 Sobic005G210500--Sobic001G117900 Sobic003G005500 Sobic003G005500 Sobic005G210500--Sobic003G005500 Sobic005G210500--Sobic010G252200 Sobic007G102300 Sobic007G102300 Sobic005G210500--Sobic007G102300 Sobic010G030000 Sobic010G030000 Sobic005G210500--Sobic010G030000 Sobic004G306100 Sobic004G306100 Sobic006G127200--Sobic004G306100 Sobic002G271400 Sobic002G271400 Sobic006G127200--Sobic002G271400 Sobic006G127200--Sobic010G257500 Sobic002G123600 Sobic002G123600 Sobic006G127200--Sobic002G123600 Sobic003G409600 Sobic003G409600 Sobic006G127200--Sobic003G409600 Sobic003G226700 Sobic003G226700 Sobic006G127200--Sobic003G226700 Sobic006G127200--Sobic009G081800 Sobic010G103500 Sobic010G103500 Sobic006G127200--Sobic010G103500 Sobic001G025900 Sobic001G025900 Sobic006G127200--Sobic001G025900 Sobic002G113400 Sobic002G113400 Sobic006G119300--Sobic002G113400 Sobic006G119300--Sobic001G486600 Sobic002G297500 Sobic002G297500 Sobic006G119300--Sobic002G297500 Sobic007G125300 Sobic007G125300 Sobic006G119300--Sobic007G125300 Sobic006G119300--Sobic010G252200 Sobic006G119300--Sobic001G521100 Sobic004G032900 Sobic004G032900 Sobic006G119300--Sobic004G032900 Sobic006G119300--Sobic005G210500 Sobic004G053900 Sobic004G053900 Sobic006G119300--Sobic004G053900 Sobic010G038900 Sobic010G038900 Sobic004G350200--Sobic010G038900 Sobic004G000400 Sobic004G000400 Sobic004G350200--Sobic004G000400 Sobic005G160200 Sobic005G160200 Sobic004G350200--Sobic005G160200 Sobic007G036800 Sobic007G036800 Sobic004G350200--Sobic007G036800 Sobic004G063300 Sobic004G063300 Sobic004G350200--Sobic004G063300 Sobic001G123600 Sobic001G123600 Sobic004G350200--Sobic001G123600 Sobic009G063800 Sobic009G063800 Sobic004G350200--Sobic009G063800 Sobic006G106600 Sobic006G106600 Sobic004G350200--Sobic006G106600 Sobic001G229300 Sobic001G229300 Sobic004G350200--Sobic001G229300 Sobic010G252200--Sobic006G126800 Sobic010G252200--Sobic005G210500 Sobic010G252200--Sobic009G081800 Sobic010G252200--Sobic001G486600 Sobic003G184666 Sobic003G184666 Sobic010G252200--Sobic003G184666 Sobic010G252200--Sobic006G119300 Sobic001G268300 Sobic001G268300 Sobic010G252200--Sobic001G268300 Sobic002G362200 Sobic002G362200 Sobic010G252200--Sobic002G362200 Sobic003G045450 Sobic003G045450 Sobic010G252200--Sobic003G045450 Sobic010G009600 Sobic010G009600 Sobic010G257500--Sobic010G009600 Sobic003G343200 Sobic003G343200 Sobic010G257500--Sobic003G343200 Sobic001G534400 Sobic001G534400 Sobic010G257500--Sobic001G534400 Sobic010G257500--Sobic006G127200 Sobic010G013400 Sobic010G013400 Sobic010G257500--Sobic010G013400 Sobic010G018900 Sobic010G018900 Sobic010G257500--Sobic010G018900 Sobic010G257500--Sobic002G271400 Sobic004G014100 Sobic004G014100 Sobic010G257500--Sobic004G014100 Sobic010G257500--Sobic010G038900 Sobic001G521100--Sobic002G113400 Sobic002G246900 Sobic002G246900 Sobic001G521100--Sobic002G246900 Sobic002G351100 Sobic002G351100 Sobic001G521100--Sobic002G351100 Sobic001G521100--Sobic002G315400 Sobic001G521100--Sobic001G025900 Sobic001G521100--Sobic006G119300 Sobic006G236800 Sobic006G236800 Sobic001G521100--Sobic006G236800 Sobic003G442300 Sobic003G442300 Sobic001G521100--Sobic003G442300 Sobic001G521100--Sobic003G297200
Octagon: transcription factors


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