Gene annotation
Transcriptome id Sobic.005G210500.2,Sobic.005G210500.1
Synonym Sb05g026350, RECQI1
Functional annotation -
UniProt C5Y7K6 , A0A1Z5RK69
Pfam PF00271 PF00270 PF16124 PF00270 PF00271
Panther DB PTHR13710 PTHR13710:SF70
NCBI CDD KOG0353; ATP-dependent DNA helicase
KEGG Orthology K10901; BLM, RECQL3, bloom syndrome protein
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G05740 : RECQ helicase l1
RAP-DB (Rice) LOC_Os11g44910.2,LOC_Os11g44910.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a029161
Brachypodium PNT78137 , PNT78136 , KQK23510 , KQK23511 , KQK23512 , KQK23509 , KQK23508 , KQJ87281 , KQJ87280
Barley HORVU4Hr1G032190.15 , HORVU4Hr1G032190.14 , HORVU4Hr1G032190.17 , HORVU4Hr1G032190.16 , HORVU4Hr1G032190.11 , HORVU4Hr1G032190.10 , HORVU4Hr1G032190.13 , HORVU4Hr1G032190.12 , HORVU4Hr1G032190.19 , HORVU4Hr1G032190.18 , HORVU4Hr1G032190.1 , HORVU4Hr1G032190.3 , HORVU4Hr1G032190.2 , HORVU4Hr1G032190.5 , HORVU4Hr1G032190.4 , HORVU4Hr1G032190.7 , HORVU4Hr1G032190.6 , HORVU4Hr1G032190.9 , HORVU4Hr1G032190.8 , HORVU4Hr1G032190.20
Wheat TraesCS4D02G144400 , TraesCS4D02G144400 , TraesCS4B02G126600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G418400 expressed protein -
2 Sobic.001G486600 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
3 Sobic.009G214500 IQ calmodulin-binding motif domain containing protein, expressed -
4 Sobic.010G038200 CDT1A - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
5 Sobic.001G117900 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
6 Sobic.003G005500 B3 DNA binding domain containing protein, expressed -
7 Sobic.010G252200 PPR repeat domain containing protein, putative, expressed -
8 Sobic.007G102300 formin, putative, expressed -
9 Sobic.010G030000 leucine rich repeat protein, putative, expressed -
10 Sobic.004G117400 expressed protein -
11 Sobic.001G433600 - -
12 Sobic.010G009700 OsFBX182 - F-box domain containing protein, expressed -
13 Sobic.005G060100 growth regulator related protein, putative, expressed -
14 Sobic.009G025700 cycloeucalenol cycloisomerase, putative, expressed K08246: cycloeucalenol cycloisomerase
15 Sobic.001G529500 PPR repeat domain containing protein, putative, expressed -
16 Sobic.006G119300 ribonuclease H2 subunit B, putative, expressed K10744: ribonuclease H2 subunit B
17 Sobic.001G534466 - -
18 Sobic.002G286632 - -
19 Sobic.007G086600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase
20 Sobic.002G309100 phosphate-induced protein 1 conserved region domain containing protein, expressed -


Gene co-expression network
sample Sobic005G210500 Sobic005G210500 Sobic003G418400 Sobic003G418400 Sobic005G210500--Sobic003G418400 Sobic001G486600 Sobic001G486600 Sobic005G210500--Sobic001G486600 Sobic009G214500 Sobic009G214500 Sobic005G210500--Sobic009G214500 Sobic010G038200 Sobic010G038200 Sobic005G210500--Sobic010G038200 Sobic001G117900 Sobic001G117900 Sobic005G210500--Sobic001G117900 Sobic003G005500 Sobic003G005500 Sobic005G210500--Sobic003G005500 Sobic010G252200 Sobic010G252200 Sobic005G210500--Sobic010G252200 Sobic007G102300 Sobic007G102300 Sobic005G210500--Sobic007G102300 Sobic010G030000 Sobic010G030000 Sobic005G210500--Sobic010G030000 Sobic003G418400--Sobic005G210500 Sobic003G418400--Sobic001G117900 Sobic003G418400--Sobic009G214500 Sobic004G215200 Sobic004G215200 Sobic003G418400--Sobic004G215200 Sobic006G208200 Sobic006G208200 Sobic003G418400--Sobic006G208200 Sobic001G433600 Sobic001G433600 Sobic003G418400--Sobic001G433600 Sobic002G309100 Sobic002G309100 Sobic003G418400--Sobic002G309100 Sobic010G009700 Sobic010G009700 Sobic003G418400--Sobic010G009700 Sobic001G327100 Sobic001G327100 Sobic003G418400--Sobic001G327100 Sobic001G486600--Sobic005G210500 Sobic008G131900 Sobic008G131900 Sobic001G486600--Sobic008G131900 Sobic001G486600--Sobic010G038200 Sobic002G173400 Sobic002G173400 Sobic001G486600--Sobic002G173400 Sobic006G119300 Sobic006G119300 Sobic001G486600--Sobic006G119300 Sobic008G047500 Sobic008G047500 Sobic001G486600--Sobic008G047500 Sobic001G486600--Sobic010G030000 Sobic001G486600--Sobic010G252200 Sobic003G204100 Sobic003G204100 Sobic001G486600--Sobic003G204100 Sobic009G214500--Sobic007G102300 Sobic001G385300 Sobic001G385300 Sobic009G214500--Sobic001G385300 Sobic007G102000 Sobic007G102000 Sobic009G214500--Sobic007G102000 Sobic009G163100 Sobic009G163100 Sobic009G214500--Sobic009G163100 Sobic009G214500--Sobic001G327100 Sobic001G380700 Sobic001G380700 Sobic009G214500--Sobic001G380700 Sobic003G376900 Sobic003G376900 Sobic009G214500--Sobic003G376900 Sobic004G241300 Sobic004G241300 Sobic009G214500--Sobic004G241300 Sobic003G423700 Sobic003G423700 Sobic009G214500--Sobic003G423700 Sobic009G136000 Sobic009G136000 Sobic010G038200--Sobic009G136000 Sobic010G038200--Sobic010G030000 Sobic010G038200--Sobic010G009700 Sobic010G038200--Sobic008G131900 Sobic001G248400 Sobic001G248400 Sobic010G038200--Sobic001G248400 Sobic005G060100 Sobic005G060100 Sobic010G038200--Sobic005G060100 Sobic010G038200--Sobic009G214500 Sobic003G216600 Sobic003G216600 Sobic010G038200--Sobic003G216600 Sobic002G052800 Sobic002G052800 Sobic010G038200--Sobic002G052800 Sobic002G308000 Sobic002G308000 Sobic001G117900--Sobic002G308000 Sobic001G117900--Sobic001G433600 Sobic002G392400 Sobic002G392400 Sobic001G117900--Sobic002G392400 Sobic007G086600 Sobic007G086600 Sobic001G117900--Sobic007G086600 Sobic001G117900--Sobic005G060100 Sobic007G105700 Sobic007G105700 Sobic001G117900--Sobic007G105700 Sobic002G348400 Sobic002G348400 Sobic001G117900--Sobic002G348400 Sobic009G025700 Sobic009G025700 Sobic001G117900--Sobic009G025700 Sobic003G004800 Sobic003G004800 Sobic001G117900--Sobic003G004800 Sobic001G010500 Sobic001G010500 Sobic003G005500--Sobic001G010500 Sobic003G005500--Sobic007G102300 Sobic009G163400 Sobic009G163400 Sobic003G005500--Sobic009G163400 Sobic003G005500--Sobic009G214500 Sobic002G339666 Sobic002G339666 Sobic003G005500--Sobic002G339666 Sobic008G141900 Sobic008G141900 Sobic003G005500--Sobic008G141900 Sobic007G122700 Sobic007G122700 Sobic003G005500--Sobic007G122700 Sobic002G286632 Sobic002G286632 Sobic003G005500--Sobic002G286632 Sobic003G005500--Sobic002G309100 Sobic006G126800 Sobic006G126800 Sobic010G252200--Sobic006G126800 Sobic010G252200--Sobic005G210500 Sobic009G081800 Sobic009G081800 Sobic010G252200--Sobic009G081800 Sobic010G252200--Sobic001G486600 Sobic003G184666 Sobic003G184666 Sobic010G252200--Sobic003G184666 Sobic010G252200--Sobic006G119300 Sobic001G268300 Sobic001G268300 Sobic010G252200--Sobic001G268300 Sobic002G362200 Sobic002G362200 Sobic010G252200--Sobic002G362200 Sobic003G045450 Sobic003G045450 Sobic010G252200--Sobic003G045450 Sobic007G102300--Sobic009G214500 Sobic007G102300--Sobic005G060100 Sobic007G102300--Sobic001G385300 Sobic009G220700 Sobic009G220700 Sobic007G102300--Sobic009G220700 Sobic003G217800 Sobic003G217800 Sobic007G102300--Sobic003G217800 Sobic003G352900 Sobic003G352900 Sobic007G102300--Sobic003G352900 Sobic007G102300--Sobic003G216600 Sobic002G299500 Sobic002G299500 Sobic007G102300--Sobic002G299500 Sobic007G102300--Sobic003G005500 Sobic010G030000--Sobic010G038200 Sobic010G030000--Sobic009G136000 Sobic010G030000--Sobic008G131900 Sobic010G030000--Sobic010G009700 Sobic010G243100 Sobic010G243100 Sobic010G030000--Sobic010G243100 Sobic010G030000--Sobic005G210500 Sobic010G030000--Sobic003G216600 Sobic010G030000--Sobic001G486600 Sobic010G222800 Sobic010G222800 Sobic010G030000--Sobic010G222800
Octagon: transcription factors


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