Gene annotation
Transcriptome id Sobic.004G117400.1
Synonym AGP16, ATAGP16, Sb04g009780
Functional annotation expressed protein
UniProt A0A1Z5RMD2
Pfam PF06376
Panther DB PTHR33374 PTHR33374:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G61640 : arabinogalactan protein 20
RAP-DB (Rice) LOC_Os01g46850.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G125800 expressed protein -
2 Sobic.009G214500 IQ calmodulin-binding motif domain containing protein, expressed -
3 Sobic.009G131200 expressed protein -
4 Sobic.005G210500 - K10901: BLM, RECQL3, bloom syndrome protein
5 Sobic.002G322700 expressed protein -
6 Sobic.010G009700 OsFBX182 - F-box domain containing protein, expressed -
7 Sobic.010G038200 CDT1A - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
8 Sobic.009G136000 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
9 Sobic.001G192700 major facilitator superfamily domain-containing protein 5, putative, expressed -
10 Sobic.007G102300 formin, putative, expressed -
11 Sobic.001G385300 auxin-independent growth promoter protein, putative, expressed -
12 Sobic.001G327100 OsFBX157 - F-box domain containing protein, expressed -
13 Sobic.001G082800 ORC5 - Putative origin recognition complex subunit 5, expressed K02607: origin recognition complex subunit 5
14 Sobic.003G418400 expressed protein -
15 Sobic.005G045800 serine/threonine-protein kinase WNK4, putative, expressed K08867: WNK, WNK lysine deficient protein kinase
16 Sobic.008G188800 ankyrin repeat domain-containing protein, putative, expressed -
17 Sobic.003G376900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pectinesterase, putative, expressed -
18 Sobic.004G062600 OsFBX154 - F-box domain containing protein, expressed -
19 Sobic.002G052800 FAR1 family protein, expressed -
20 Sobic.001G126800 WD domain, G-beta repeat domain containing protein, expressed K11790: DTL, CDT2, denticleless


Gene co-expression network
sample Sobic004G117400 Sobic004G117400 Sobic009G125800 Sobic009G125800 Sobic004G117400--Sobic009G125800 Sobic009G214500 Sobic009G214500 Sobic004G117400--Sobic009G214500 Sobic009G131200 Sobic009G131200 Sobic004G117400--Sobic009G131200 Sobic005G210500 Sobic005G210500 Sobic004G117400--Sobic005G210500 Sobic002G322700 Sobic002G322700 Sobic004G117400--Sobic002G322700 Sobic010G009700 Sobic010G009700 Sobic004G117400--Sobic010G009700 Sobic010G038200 Sobic010G038200 Sobic004G117400--Sobic010G038200 Sobic009G136000 Sobic009G136000 Sobic004G117400--Sobic009G136000 Sobic001G192700 Sobic001G192700 Sobic004G117400--Sobic001G192700 Sobic009G125800--Sobic009G136000 Sobic009G125800--Sobic004G117400 Sobic001G082800 Sobic001G082800 Sobic009G125800--Sobic001G082800 Sobic009G125800--Sobic009G131200 Sobic002G390800 Sobic002G390800 Sobic009G125800--Sobic002G390800 Sobic009G125800--Sobic010G009700 Sobic007G146200 Sobic007G146200 Sobic009G125800--Sobic007G146200 Sobic008G188800 Sobic008G188800 Sobic009G125800--Sobic008G188800 Sobic009G125800--Sobic009G214500 Sobic007G102300 Sobic007G102300 Sobic009G214500--Sobic007G102300 Sobic001G385300 Sobic001G385300 Sobic009G214500--Sobic001G385300 Sobic007G102000 Sobic007G102000 Sobic009G214500--Sobic007G102000 Sobic009G163100 Sobic009G163100 Sobic009G214500--Sobic009G163100 Sobic001G327100 Sobic001G327100 Sobic009G214500--Sobic001G327100 Sobic001G380700 Sobic001G380700 Sobic009G214500--Sobic001G380700 Sobic003G376900 Sobic003G376900 Sobic009G214500--Sobic003G376900 Sobic004G241300 Sobic004G241300 Sobic009G214500--Sobic004G241300 Sobic003G423700 Sobic003G423700 Sobic009G214500--Sobic003G423700 Sobic009G131200--Sobic009G125800 Sobic008G004900 Sobic008G004900 Sobic009G131200--Sobic008G004900 Sobic009G131200--Sobic001G082800 Sobic009G131200--Sobic009G136000 Sobic004G063600 Sobic004G063600 Sobic009G131200--Sobic004G063600 Sobic009G131200--Sobic004G117400 Sobic009G058100 Sobic009G058100 Sobic009G131200--Sobic009G058100 Sobic001G069700 Sobic001G069700 Sobic009G131200--Sobic001G069700 Sobic009G131200--Sobic010G009700 Sobic003G418400 Sobic003G418400 Sobic005G210500--Sobic003G418400 Sobic001G486600 Sobic001G486600 Sobic005G210500--Sobic001G486600 Sobic005G210500--Sobic009G214500 Sobic005G210500--Sobic010G038200 Sobic001G117900 Sobic001G117900 Sobic005G210500--Sobic001G117900 Sobic003G005500 Sobic003G005500 Sobic005G210500--Sobic003G005500 Sobic010G252200 Sobic010G252200 Sobic005G210500--Sobic010G252200 Sobic005G210500--Sobic007G102300 Sobic010G030000 Sobic010G030000 Sobic005G210500--Sobic010G030000 Sobic002G322700--Sobic010G009700 Sobic005G045800 Sobic005G045800 Sobic002G322700--Sobic005G045800 Sobic002G322700--Sobic007G146200 Sobic001G131900 Sobic001G131900 Sobic002G322700--Sobic001G131900 Sobic008G140600 Sobic008G140600 Sobic002G322700--Sobic008G140600 Sobic002G322700--Sobic001G385300 Sobic007G105700 Sobic007G105700 Sobic002G322700--Sobic007G105700 Sobic009G066200 Sobic009G066200 Sobic002G322700--Sobic009G066200 Sobic002G322700--Sobic008G188800 Sobic004G298600 Sobic004G298600 Sobic010G009700--Sobic004G298600 Sobic010G009700--Sobic001G131900 Sobic010G009700--Sobic010G038200 Sobic006G189000 Sobic006G189000 Sobic010G009700--Sobic006G189000 Sobic005G060100 Sobic005G060100 Sobic010G009700--Sobic005G060100 Sobic009G054400 Sobic009G054400 Sobic010G009700--Sobic009G054400 Sobic010G009700--Sobic002G322700 Sobic002G151500 Sobic002G151500 Sobic010G009700--Sobic002G151500 Sobic010G009700--Sobic007G102300 Sobic010G038200--Sobic009G136000 Sobic010G038200--Sobic010G030000 Sobic010G038200--Sobic010G009700 Sobic008G131900 Sobic008G131900 Sobic010G038200--Sobic008G131900 Sobic001G248400 Sobic001G248400 Sobic010G038200--Sobic001G248400 Sobic010G038200--Sobic005G060100 Sobic010G038200--Sobic009G214500 Sobic003G216600 Sobic003G216600 Sobic010G038200--Sobic003G216600 Sobic002G052800 Sobic002G052800 Sobic010G038200--Sobic002G052800 Sobic009G136000--Sobic010G038200 Sobic009G136000--Sobic001G082800 Sobic009G136000--Sobic009G125800 Sobic009G136000--Sobic008G131900 Sobic009G136000--Sobic010G030000 Sobic006G193100 Sobic006G193100 Sobic009G136000--Sobic006G193100 Sobic009G136000--Sobic002G390800 Sobic009G136000--Sobic009G131200 Sobic009G136000--Sobic002G052800 Sobic001G219800 Sobic001G219800 Sobic001G192700--Sobic001G219800 Sobic003G016300 Sobic003G016300 Sobic001G192700--Sobic003G016300 Sobic001G352800 Sobic001G352800 Sobic001G192700--Sobic001G352800 Sobic002G232400 Sobic002G232400 Sobic001G192700--Sobic002G232400 Sobic001G135200 Sobic001G135200 Sobic001G192700--Sobic001G135200 Sobic001G348000 Sobic001G348000 Sobic001G192700--Sobic001G348000 Sobic001G192700--Sobic004G117400 Sobic001G091701 Sobic001G091701 Sobic001G192700--Sobic001G091701 Sobic002G387800 Sobic002G387800 Sobic001G192700--Sobic002G387800
Octagon: transcription factors


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