Gene annotation
Transcriptome id Sobic.001G529500.1
Synonym Sb01g049260
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5X0Y4
Pfam PF01535 PF13812 PF13041
Panther DB PTHR24015 PTHR24015:SF482
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09900 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os03g02762.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a000276
Brachypodium KQK23953
Barley -
Wheat TraesCS4D02G346100 , TraesCS4B02G351300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G210500 - K10901: BLM, RECQL3, bloom syndrome protein
2 Sobic.001G327100 OsFBX157 - F-box domain containing protein, expressed -
3 Sobic.001G486600 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
4 Sobic.010G147500 tryptophan biosynthesis protein trpCF, putative, expressed K01817: phosphoribosylanthranilate isomerase
5 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
6 Sobic.010G188900 PPR repeat domain containing protein, putative, expressed -
7 Sobic.001G203600 PPR repeat domain containing protein, putative, expressed -
8 Sobic.001G023600 YIF1B, putative, expressed -
9 Sobic.003G418400 expressed protein -
10 Sobic.001G117900 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
11 Sobic.009G047700 E3 ubiquitin-protein ligase SINA-like 2, putative, expressed -
12 Sobic.007G140100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
13 Sobic.009G214500 IQ calmodulin-binding motif domain containing protein, expressed -
14 Sobic.002G108100 OsFBLD6 - F-box, LRR and FBD domain containing protein, expressed -
15 Sobic.002G153400 meiotic coiled-coil protein 7, putative, expressed -
16 Sobic.004G298600 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
17 Sobic.006G119300 ribonuclease H2 subunit B, putative, expressed K10744: ribonuclease H2 subunit B
18 Sobic.001G433600 - -
19 Sobic.003G200000 respiratory burst oxidase, putative, expressed -
20 Sobic.004G051600 EMB2758, putative, expressed -


Gene co-expression network
sample Sobic001G529500 Sobic001G529500 Sobic005G210500 Sobic005G210500 Sobic001G529500--Sobic005G210500 Sobic001G327100 Sobic001G327100 Sobic001G529500--Sobic001G327100 Sobic001G486600 Sobic001G486600 Sobic001G529500--Sobic001G486600 Sobic010G147500 Sobic010G147500 Sobic001G529500--Sobic010G147500 Sobic001G268300 Sobic001G268300 Sobic001G529500--Sobic001G268300 Sobic010G188900 Sobic010G188900 Sobic001G529500--Sobic010G188900 Sobic001G203600 Sobic001G203600 Sobic001G529500--Sobic001G203600 Sobic001G023600 Sobic001G023600 Sobic001G529500--Sobic001G023600 Sobic003G418400 Sobic003G418400 Sobic001G529500--Sobic003G418400 Sobic005G210500--Sobic003G418400 Sobic005G210500--Sobic001G486600 Sobic009G214500 Sobic009G214500 Sobic005G210500--Sobic009G214500 Sobic010G038200 Sobic010G038200 Sobic005G210500--Sobic010G038200 Sobic001G117900 Sobic001G117900 Sobic005G210500--Sobic001G117900 Sobic003G005500 Sobic003G005500 Sobic005G210500--Sobic003G005500 Sobic010G252200 Sobic010G252200 Sobic005G210500--Sobic010G252200 Sobic007G102300 Sobic007G102300 Sobic005G210500--Sobic007G102300 Sobic010G030000 Sobic010G030000 Sobic005G210500--Sobic010G030000 Sobic001G327100--Sobic009G214500 Sobic008G085950 Sobic008G085950 Sobic001G327100--Sobic008G085950 Sobic003G200000 Sobic003G200000 Sobic001G327100--Sobic003G200000 Sobic001G385300 Sobic001G385300 Sobic001G327100--Sobic001G385300 Sobic005G060100 Sobic005G060100 Sobic001G327100--Sobic005G060100 Sobic008G047500 Sobic008G047500 Sobic001G327100--Sobic008G047500 Sobic001G327100--Sobic007G102300 Sobic004G062600 Sobic004G062600 Sobic001G327100--Sobic004G062600 Sobic005G045800 Sobic005G045800 Sobic001G327100--Sobic005G045800 Sobic001G486600--Sobic005G210500 Sobic008G131900 Sobic008G131900 Sobic001G486600--Sobic008G131900 Sobic001G486600--Sobic010G038200 Sobic002G173400 Sobic002G173400 Sobic001G486600--Sobic002G173400 Sobic006G119300 Sobic006G119300 Sobic001G486600--Sobic006G119300 Sobic001G486600--Sobic008G047500 Sobic001G486600--Sobic010G030000 Sobic001G486600--Sobic010G252200 Sobic003G204100 Sobic003G204100 Sobic001G486600--Sobic003G204100 Sobic010G147500--Sobic001G117900 Sobic010G147500--Sobic001G529500 Sobic010G147500--Sobic010G188900 Sobic002G308000 Sobic002G308000 Sobic010G147500--Sobic002G308000 Sobic001G440000 Sobic001G440000 Sobic010G147500--Sobic001G440000 Sobic010G147500--Sobic003G204100 Sobic006G095000 Sobic006G095000 Sobic010G147500--Sobic006G095000 Sobic001G248400 Sobic001G248400 Sobic010G147500--Sobic001G248400 Sobic004G298600 Sobic004G298600 Sobic010G147500--Sobic004G298600 Sobic009G041800 Sobic009G041800 Sobic001G268300--Sobic009G041800 Sobic008G179000 Sobic008G179000 Sobic001G268300--Sobic008G179000 Sobic006G262800 Sobic006G262800 Sobic001G268300--Sobic006G262800 Sobic002G362200 Sobic002G362200 Sobic001G268300--Sobic002G362200 Sobic008G031200 Sobic008G031200 Sobic001G268300--Sobic008G031200 Sobic003G142400 Sobic003G142400 Sobic001G268300--Sobic003G142400 Sobic001G268300--Sobic010G252200 Sobic004G282500 Sobic004G282500 Sobic001G268300--Sobic004G282500 Sobic005G078700 Sobic005G078700 Sobic001G268300--Sobic005G078700 Sobic010G188900--Sobic002G308000 Sobic002G192900 Sobic002G192900 Sobic010G188900--Sobic002G192900 Sobic010G253200 Sobic010G253200 Sobic010G188900--Sobic010G253200 Sobic008G132200 Sobic008G132200 Sobic010G188900--Sobic008G132200 Sobic003G045000 Sobic003G045000 Sobic010G188900--Sobic003G045000 Sobic003G075200 Sobic003G075200 Sobic010G188900--Sobic003G075200 Sobic010G080900 Sobic010G080900 Sobic010G188900--Sobic010G080900 Sobic001G352800 Sobic001G352800 Sobic010G188900--Sobic001G352800 Sobic008G104000 Sobic008G104000 Sobic010G188900--Sobic008G104000 Sobic010G086300 Sobic010G086300 Sobic001G203600--Sobic010G086300 Sobic001G203600--Sobic001G117900 Sobic007G204000 Sobic007G204000 Sobic001G203600--Sobic007G204000 Sobic001G052100 Sobic001G052100 Sobic001G203600--Sobic001G052100 Sobic008G072500 Sobic008G072500 Sobic001G203600--Sobic008G072500 Sobic007G226800 Sobic007G226800 Sobic001G203600--Sobic007G226800 Sobic002G182000 Sobic002G182000 Sobic001G203600--Sobic002G182000 Sobic006G220400 Sobic006G220400 Sobic001G203600--Sobic006G220400 Sobic009G063800 Sobic009G063800 Sobic001G203600--Sobic009G063800 Sobic008G058200 Sobic008G058200 Sobic001G023600--Sobic008G058200 Sobic001G023600--Sobic003G200000 Sobic001G023600--Sobic001G327100 Sobic001G023600--Sobic001G529500 Sobic001G023600--Sobic005G045800 Sobic002G108100 Sobic002G108100 Sobic001G023600--Sobic002G108100 Sobic001G348000 Sobic001G348000 Sobic001G023600--Sobic001G348000 Sobic001G433600 Sobic001G433600 Sobic001G023600--Sobic001G433600 Sobic003G167000 Sobic003G167000 Sobic001G023600--Sobic003G167000 Sobic003G418400--Sobic005G210500 Sobic003G418400--Sobic001G117900 Sobic003G418400--Sobic009G214500 Sobic004G215200 Sobic004G215200 Sobic003G418400--Sobic004G215200 Sobic006G208200 Sobic006G208200 Sobic003G418400--Sobic006G208200 Sobic003G418400--Sobic001G433600 Sobic002G309100 Sobic002G309100 Sobic003G418400--Sobic002G309100 Sobic010G009700 Sobic010G009700 Sobic003G418400--Sobic010G009700 Sobic003G418400--Sobic001G327100
Octagon: transcription factors


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