Gene annotation
Transcriptome id Sobic.009G047700.3,Sobic.009G047700.1
Synonym
Functional annotation E3 ubiquitin-protein ligase SINA-like 2, putative, expressed
UniProt A0A1B6P6R7 , A0A1B6P6H7
Pfam PF03145
Panther DB PTHR10315 PTHR10315:SF35
NCBI CDD KOG3002; Zn finger protein
KEGG Orthology -
Gene Ontology GO:0007275; multicellular organism development GO:0006511ubiquitin-dependent protein catabolic process GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G37870 : Protein with RING/U-box and TRAF-like domains
RAP-DB (Rice) LOC_Os05g06060.1 : E3 ubiquitin-protein ligase SINA-like 2, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G478900 pentatricopeptide, putative, expressed -
2 Sobic.003G091600 expressed protein -
3 Sobic.001G052100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
4 Sobic.007G106600 - -
5 Sobic.009G227100 expressed protein -
6 Sobic.005G123400 expressed protein -
7 Sobic.001G529500 PPR repeat domain containing protein, putative, expressed -
8 Sobic.004G189000 - -
9 Sobic.004G051600 EMB2758, putative, expressed -
10 Sobic.008G095900 ATP binding protein, putative, expressed K17592: sacsin
11 Sobic.008G039000 expressed protein -
12 Sobic.002G108100 OsFBLD6 - F-box, LRR and FBD domain containing protein, expressed -
13 Sobic.010G123100 transporter-related, putative, expressed -
14 Sobic.004G194400 expressed protein -
15 Sobic.010G277700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
16 Sobic.008G100300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pumilio-family RNA binding repeat domain containing protein, expressed -
17 Sobic.001G308500 glycosyltransferase family protein 1, putative, expressed -
18 Sobic.003G057050 - -
19 Sobic.002G336400 OsFBLD4 - F-box, LRR and FBD domain containing protein, expressed -
20 Sobic.003G200000 respiratory burst oxidase, putative, expressed -


Gene co-expression network
sample Sobic009G047700 Sobic009G047700 Sobic001G478900 Sobic001G478900 Sobic009G047700--Sobic001G478900 Sobic003G091600 Sobic003G091600 Sobic009G047700--Sobic003G091600 Sobic001G052100 Sobic001G052100 Sobic009G047700--Sobic001G052100 Sobic007G106600 Sobic007G106600 Sobic009G047700--Sobic007G106600 Sobic009G227100 Sobic009G227100 Sobic009G047700--Sobic009G227100 Sobic005G123400 Sobic005G123400 Sobic009G047700--Sobic005G123400 Sobic001G529500 Sobic001G529500 Sobic009G047700--Sobic001G529500 Sobic004G189000 Sobic004G189000 Sobic009G047700--Sobic004G189000 Sobic004G051600 Sobic004G051600 Sobic009G047700--Sobic004G051600 Sobic008G095900 Sobic008G095900 Sobic001G478900--Sobic008G095900 Sobic006G262800 Sobic006G262800 Sobic001G478900--Sobic006G262800 Sobic004G256900 Sobic004G256900 Sobic001G478900--Sobic004G256900 Sobic003G184300 Sobic003G184300 Sobic001G478900--Sobic003G184300 Sobic001G478900--Sobic009G047700 Sobic001G478900--Sobic004G051600 Sobic010G068900 Sobic010G068900 Sobic001G478900--Sobic010G068900 Sobic009G253101 Sobic009G253101 Sobic001G478900--Sobic009G253101 Sobic010G123100 Sobic010G123100 Sobic001G478900--Sobic010G123100 Sobic007G184800 Sobic007G184800 Sobic003G091600--Sobic007G184800 Sobic003G289100 Sobic003G289100 Sobic003G091600--Sobic003G289100 Sobic003G213000 Sobic003G213000 Sobic003G091600--Sobic003G213000 Sobic008G155400 Sobic008G155400 Sobic003G091600--Sobic008G155400 Sobic002G203600 Sobic002G203600 Sobic003G091600--Sobic002G203600 Sobic010G146000 Sobic010G146000 Sobic003G091600--Sobic010G146000 Sobic008G036600 Sobic008G036600 Sobic003G091600--Sobic008G036600 Sobic007G192400 Sobic007G192400 Sobic003G091600--Sobic007G192400 Sobic001G519600 Sobic001G519600 Sobic003G091600--Sobic001G519600 Sobic001G052100--Sobic005G123400 Sobic008G039000 Sobic008G039000 Sobic001G052100--Sobic008G039000 Sobic001G203600 Sobic001G203600 Sobic001G052100--Sobic001G203600 Sobic010G112600 Sobic010G112600 Sobic001G052100--Sobic010G112600 Sobic006G237500 Sobic006G237500 Sobic001G052100--Sobic006G237500 Sobic001G052100--Sobic006G262800 Sobic001G052100--Sobic009G227100 Sobic001G052100--Sobic001G478900 Sobic001G052100--Sobic008G095900 Sobic002G108100 Sobic002G108100 Sobic007G106600--Sobic002G108100 Sobic007G106600--Sobic004G189000 Sobic001G135700 Sobic001G135700 Sobic007G106600--Sobic001G135700 Sobic007G141600 Sobic007G141600 Sobic007G106600--Sobic007G141600 Sobic007G106600--Sobic001G478900 Sobic006G265800 Sobic006G265800 Sobic007G106600--Sobic006G265800 Sobic007G106600--Sobic008G095900 Sobic004G194400 Sobic004G194400 Sobic007G106600--Sobic004G194400 Sobic009G163100 Sobic009G163100 Sobic007G106600--Sobic009G163100 Sobic009G227100--Sobic005G123400 Sobic001G043200 Sobic001G043200 Sobic009G227100--Sobic001G043200 Sobic009G199500 Sobic009G199500 Sobic009G227100--Sobic009G199500 Sobic006G220400 Sobic006G220400 Sobic009G227100--Sobic006G220400 Sobic009G252300 Sobic009G252300 Sobic009G227100--Sobic009G252300 Sobic009G227100--Sobic001G052100 Sobic004G334200 Sobic004G334200 Sobic009G227100--Sobic004G334200 Sobic003G190200 Sobic003G190200 Sobic009G227100--Sobic003G190200 Sobic009G227100--Sobic010G112600 Sobic005G123400--Sobic006G237500 Sobic005G123400--Sobic010G112600 Sobic003G393200 Sobic003G393200 Sobic005G123400--Sobic003G393200 Sobic005G123400--Sobic001G043200 Sobic005G123400--Sobic009G227100 Sobic005G123400--Sobic009G252300 Sobic007G030100 Sobic007G030100 Sobic005G123400--Sobic007G030100 Sobic005G123400--Sobic003G190200 Sobic003G368400 Sobic003G368400 Sobic005G123400--Sobic003G368400 Sobic005G210500 Sobic005G210500 Sobic001G529500--Sobic005G210500 Sobic001G327100 Sobic001G327100 Sobic001G529500--Sobic001G327100 Sobic001G486600 Sobic001G486600 Sobic001G529500--Sobic001G486600 Sobic010G147500 Sobic010G147500 Sobic001G529500--Sobic010G147500 Sobic001G268300 Sobic001G268300 Sobic001G529500--Sobic001G268300 Sobic010G188900 Sobic010G188900 Sobic001G529500--Sobic010G188900 Sobic001G529500--Sobic001G203600 Sobic001G023600 Sobic001G023600 Sobic001G529500--Sobic001G023600 Sobic003G418400 Sobic003G418400 Sobic001G529500--Sobic003G418400 Sobic006G117700 Sobic006G117700 Sobic004G189000--Sobic006G117700 Sobic006G071362 Sobic006G071362 Sobic004G189000--Sobic006G071362 Sobic003G156900 Sobic003G156900 Sobic004G189000--Sobic003G156900 Sobic009G061500 Sobic009G061500 Sobic004G189000--Sobic009G061500 Sobic004G140400 Sobic004G140400 Sobic004G189000--Sobic004G140400 Sobic006G093600 Sobic006G093600 Sobic004G189000--Sobic006G093600 Sobic001G340800 Sobic001G340800 Sobic004G189000--Sobic001G340800 Sobic001G232600 Sobic001G232600 Sobic004G189000--Sobic001G232600 Sobic010G130601 Sobic010G130601 Sobic004G189000--Sobic010G130601 Sobic003G057050 Sobic003G057050 Sobic004G051600--Sobic003G057050 Sobic002G362500 Sobic002G362500 Sobic004G051600--Sobic002G362500 Sobic004G051600--Sobic008G095900 Sobic002G414800 Sobic002G414800 Sobic004G051600--Sobic002G414800 Sobic008G166100 Sobic008G166100 Sobic004G051600--Sobic008G166100 Sobic001G308500 Sobic001G308500 Sobic004G051600--Sobic001G308500 Sobic004G051600--Sobic009G163100 Sobic006G219801 Sobic006G219801 Sobic004G051600--Sobic006G219801 Sobic004G051600--Sobic006G071362
Octagon: transcription factors


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