Gene annotation
Transcriptome id Sobic.008G100300.1
Synonym Sb08g015290, PUM7, APUM7
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pumilio-family RNA binding repeat domain containing protein, expressed
UniProt C5YNT8
Pfam PF00806
Panther DB PTHR12537 PTHR12537:SF75
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT1G78160 : pumilio 7
RAP-DB (Rice) LOC_Os12g31000.1 : pumilio-family RNA binding repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a054246
Brachypodium KQJ86679
Barley HORVU5Hr1G038840.1
Wheat TraesCS5B02G113800 , TraesCS5A02G109300 , TraesCS5D02G121500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G146000 CSLD5 - cellulose synthase-like family D, expressed -
2 Sobic.004G189000 - -
3 Sobic.003G213000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
4 Sobic.010G277700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
5 Sobic.004G011900 - -
6 Sobic.007G082200 white-brown complex homolog protein 11, putative, expressed -
7 Sobic.010G134650 - -
8 Sobic.006G117700 - -
9 Sobic.008G100600 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
10 Sobic.006G071362 - K02021: putative ABC transport system ATP-binding protein
11 Sobic.001G405100 BTBT1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed -
12 Sobic.004G194400 expressed protein -
13 Sobic.004G051600 EMB2758, putative, expressed -
14 Sobic.005G110424 - -
15 Sobic.003G156900 expressed protein -
16 Sobic.001G065200 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
17 Sobic.010G202200 - -
18 Sobic.010G255900 DNL zinc finger domain containing protein, putative, expressed K17808: ZIM17, DNLZ, mitochondrial protein import protein ZIM17
19 Sobic.010G130601 - -
20 Sobic.008G017850 - -


Gene co-expression network
sample Sobic008G100300 Sobic008G100300 Sobic010G146000 Sobic010G146000 Sobic008G100300--Sobic010G146000 Sobic004G189000 Sobic004G189000 Sobic008G100300--Sobic004G189000 Sobic003G213000 Sobic003G213000 Sobic008G100300--Sobic003G213000 Sobic010G277700 Sobic010G277700 Sobic008G100300--Sobic010G277700 Sobic004G011900 Sobic004G011900 Sobic008G100300--Sobic004G011900 Sobic007G082200 Sobic007G082200 Sobic008G100300--Sobic007G082200 Sobic010G134650 Sobic010G134650 Sobic008G100300--Sobic010G134650 Sobic006G117700 Sobic006G117700 Sobic008G100300--Sobic006G117700 Sobic008G100600 Sobic008G100600 Sobic008G100300--Sobic008G100600 Sobic010G146000--Sobic004G011900 Sobic010G146000--Sobic008G100600 Sobic010G146000--Sobic008G100300 Sobic010G146000--Sobic003G213000 Sobic001G405100 Sobic001G405100 Sobic010G146000--Sobic001G405100 Sobic005G110424 Sobic005G110424 Sobic010G146000--Sobic005G110424 Sobic004G082800 Sobic004G082800 Sobic010G146000--Sobic004G082800 Sobic010G202200 Sobic010G202200 Sobic010G146000--Sobic010G202200 Sobic008G036600 Sobic008G036600 Sobic010G146000--Sobic008G036600 Sobic004G189000--Sobic006G117700 Sobic006G071362 Sobic006G071362 Sobic004G189000--Sobic006G071362 Sobic003G156900 Sobic003G156900 Sobic004G189000--Sobic003G156900 Sobic009G061500 Sobic009G061500 Sobic004G189000--Sobic009G061500 Sobic004G140400 Sobic004G140400 Sobic004G189000--Sobic004G140400 Sobic006G093600 Sobic006G093600 Sobic004G189000--Sobic006G093600 Sobic001G340800 Sobic001G340800 Sobic004G189000--Sobic001G340800 Sobic001G232600 Sobic001G232600 Sobic004G189000--Sobic001G232600 Sobic010G130601 Sobic010G130601 Sobic004G189000--Sobic010G130601 Sobic008G155500 Sobic008G155500 Sobic003G213000--Sobic008G155500 Sobic003G213000--Sobic010G202200 Sobic002G382300 Sobic002G382300 Sobic003G213000--Sobic002G382300 Sobic001G519600 Sobic001G519600 Sobic003G213000--Sobic001G519600 Sobic009G230800 Sobic009G230800 Sobic003G213000--Sobic009G230800 Sobic010G024400 Sobic010G024400 Sobic003G213000--Sobic010G024400 Sobic003G213000--Sobic005G110424 Sobic003G213000--Sobic008G100600 Sobic003G213000--Sobic006G117700 Sobic010G277700--Sobic006G071362 Sobic004G194400 Sobic004G194400 Sobic010G277700--Sobic004G194400 Sobic006G134500 Sobic006G134500 Sobic010G277700--Sobic006G134500 Sobic010G277700--Sobic010G134650 Sobic009G046900 Sobic009G046900 Sobic010G277700--Sobic009G046900 Sobic008G022400 Sobic008G022400 Sobic010G277700--Sobic008G022400 Sobic010G277700--Sobic004G189000 Sobic010G277700--Sobic010G130601 Sobic010G112600 Sobic010G112600 Sobic010G277700--Sobic010G112600 Sobic004G011900--Sobic010G146000 Sobic004G011900--Sobic008G100600 Sobic004G011900--Sobic008G100300 Sobic004G011900--Sobic003G213000 Sobic004G011900--Sobic004G082800 Sobic004G011900--Sobic008G036600 Sobic004G011900--Sobic007G082200 Sobic004G011900--Sobic005G110424 Sobic004G011900--Sobic001G405100 Sobic006G239700 Sobic006G239700 Sobic007G082200--Sobic006G239700 Sobic007G082200--Sobic010G146000 Sobic007G082200--Sobic008G100300 Sobic001G065200 Sobic001G065200 Sobic007G082200--Sobic001G065200 Sobic001G444900 Sobic001G444900 Sobic007G082200--Sobic001G444900 Sobic003G091600 Sobic003G091600 Sobic007G082200--Sobic003G091600 Sobic007G082200--Sobic004G011900 Sobic007G082200--Sobic008G036600 Sobic007G082200--Sobic004G189000 Sobic010G134650--Sobic006G071362 Sobic001G257800 Sobic001G257800 Sobic010G134650--Sobic001G257800 Sobic003G385300 Sobic003G385300 Sobic010G134650--Sobic003G385300 Sobic007G039200 Sobic007G039200 Sobic010G134650--Sobic007G039200 Sobic010G134650--Sobic009G046900 Sobic008G159701 Sobic008G159701 Sobic010G134650--Sobic008G159701 Sobic003G236000 Sobic003G236000 Sobic010G134650--Sobic003G236000 Sobic010G134650--Sobic006G117700 Sobic010G134650--Sobic010G202200 Sobic006G117700--Sobic004G082800 Sobic006G117700--Sobic010G202200 Sobic006G117700--Sobic001G405100 Sobic006G117700--Sobic003G156900 Sobic006G027601 Sobic006G027601 Sobic006G117700--Sobic006G027601 Sobic006G117700--Sobic005G110424 Sobic006G001100 Sobic006G001100 Sobic006G117700--Sobic006G001100 Sobic006G117700--Sobic001G340800 Sobic006G117700--Sobic009G061500 Sobic008G100600--Sobic005G110424 Sobic008G100600--Sobic010G202200 Sobic008G100600--Sobic010G146000 Sobic001G024400 Sobic001G024400 Sobic008G100600--Sobic001G024400 Sobic008G100600--Sobic001G405100 Sobic008G100600--Sobic003G156900 Sobic008G100600--Sobic010G024400 Sobic004G025900 Sobic004G025900 Sobic008G100600--Sobic004G025900 Sobic008G017850 Sobic008G017850 Sobic008G100600--Sobic008G017850
Octagon: transcription factors


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