Gene annotation
Transcriptome id Sobic.008G100600.1
Synonym Sb08g015320, GNL2
Functional annotation pattern formation protein EMB30, putative, expressed
UniProt C5YNU1
Pfam PF12783 PF01369
Panther DB PTHR10663 PTHR10663:SF134
NCBI CDD -
KEGG Orthology K18443; golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
Gene Ontology GO:0005086; ARF guanyl-nucleotide exchange factor activity


Orthologs (automatic annotation)
TAIR AT5G19610 : GNOM-like 2
RAP-DB (Rice) LOC_Os04g02690.1 : pattern formation protein EMB30, putative, expressed
MaizeGDB (Corn) Zm00025a025595 , Zm00025a017162
Brachypodium KQK09492
Barley HORVU3Hr1G068070.6 , HORVU3Hr1G068070.2 , HORVU3Hr1G068070.3 , HORVU3Hr1G068070.1 , HORVU3Hr1G068070.7 , HORVU3Hr1G068070.4 , HORVU3Hr1G068070.5 , HORVU3Hr1G068070.8 , HORVU3Hr1G068070.9
Wheat TraesCS3D02G246200 , TraesCS3B02G274600 , TraesCS3A02G245300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G110424 - -
2 Sobic.010G202200 - -
3 Sobic.010G146000 CSLD5 - cellulose synthase-like family D, expressed -
4 Sobic.001G024400 pectinesterase inhibitor domain containing protein, expressed -
5 Sobic.001G405100 BTBT1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed -
6 Sobic.003G156900 expressed protein -
7 Sobic.010G024400 expressed protein -
8 Sobic.004G025900 glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
9 Sobic.008G017850 - -
10 Sobic.004G138750 - -
11 Sobic.007G154400 emp24/gp25L/p24 family protein, putative, expressed -
12 Sobic.008G148600 B3 DNA binding domain containing protein, expressed -
13 Sobic.009G230800 Up-regulation in phyB-1 mutant(PubMedID : 26893475)@inhibiting the nuclear localization of BRASSINOSTEROID INSENSITIVE 2(PubMedID : 28273925)@decreased the cell proliferation rates(PubMedID : 27329702)@gibberellin 2-beta-dioxygenase, putative, expressed K04125: gibberellin 2beta-dioxygenase
14 Sobic.006G143700 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
15 Sobic.001G519600 - -
16 Sobic.003G213000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
17 Sobic.009G061500 - -
18 Sobic.005G185900 expressed protein -
19 Sobic.006G027601 - -
20 Sobic.006G269101 - -


Gene co-expression network
sample Sobic008G100600 Sobic008G100600 Sobic005G110424 Sobic005G110424 Sobic008G100600--Sobic005G110424 Sobic010G202200 Sobic010G202200 Sobic008G100600--Sobic010G202200 Sobic010G146000 Sobic010G146000 Sobic008G100600--Sobic010G146000 Sobic001G024400 Sobic001G024400 Sobic008G100600--Sobic001G024400 Sobic001G405100 Sobic001G405100 Sobic008G100600--Sobic001G405100 Sobic003G156900 Sobic003G156900 Sobic008G100600--Sobic003G156900 Sobic010G024400 Sobic010G024400 Sobic008G100600--Sobic010G024400 Sobic004G025900 Sobic004G025900 Sobic008G100600--Sobic004G025900 Sobic008G017850 Sobic008G017850 Sobic008G100600--Sobic008G017850 Sobic005G110424--Sobic003G156900 Sobic005G185900 Sobic005G185900 Sobic005G110424--Sobic005G185900 Sobic008G148600 Sobic008G148600 Sobic005G110424--Sobic008G148600 Sobic009G061500 Sobic009G061500 Sobic005G110424--Sobic009G061500 Sobic006G027601 Sobic006G027601 Sobic005G110424--Sobic006G027601 Sobic005G054401 Sobic005G054401 Sobic005G110424--Sobic005G054401 Sobic003G175000 Sobic003G175000 Sobic005G110424--Sobic003G175000 Sobic008G136601 Sobic008G136601 Sobic005G110424--Sobic008G136601 Sobic001G094700 Sobic001G094700 Sobic005G110424--Sobic001G094700 Sobic009G230800 Sobic009G230800 Sobic010G202200--Sobic009G230800 Sobic006G269101 Sobic006G269101 Sobic010G202200--Sobic006G269101 Sobic010G202200--Sobic008G148600 Sobic010G202200--Sobic008G136601 Sobic001G340800 Sobic001G340800 Sobic010G202200--Sobic001G340800 Sobic010G202200--Sobic006G027601 Sobic010G202200--Sobic005G110424 Sobic010G202200--Sobic003G156900 Sobic008G097966 Sobic008G097966 Sobic010G202200--Sobic008G097966 Sobic004G011900 Sobic004G011900 Sobic010G146000--Sobic004G011900 Sobic010G146000--Sobic008G100600 Sobic008G100300 Sobic008G100300 Sobic010G146000--Sobic008G100300 Sobic003G213000 Sobic003G213000 Sobic010G146000--Sobic003G213000 Sobic010G146000--Sobic001G405100 Sobic010G146000--Sobic005G110424 Sobic004G082800 Sobic004G082800 Sobic010G146000--Sobic004G082800 Sobic010G146000--Sobic010G202200 Sobic008G036600 Sobic008G036600 Sobic010G146000--Sobic008G036600 Sobic006G143700 Sobic006G143700 Sobic001G024400--Sobic006G143700 Sobic001G024400--Sobic008G148600 Sobic001G024400--Sobic006G269101 Sobic001G024400--Sobic010G202200 Sobic001G024400--Sobic009G230800 Sobic001G024400--Sobic008G136601 Sobic001G024400--Sobic005G110424 Sobic001G024400--Sobic006G027601 Sobic001G024400--Sobic003G175000 Sobic001G405100--Sobic003G156900 Sobic005G110559 Sobic005G110559 Sobic001G405100--Sobic005G110559 Sobic007G226700 Sobic007G226700 Sobic001G405100--Sobic007G226700 Sobic010G274100 Sobic010G274100 Sobic001G405100--Sobic010G274100 Sobic002G323000 Sobic002G323000 Sobic001G405100--Sobic002G323000 Sobic008G075800 Sobic008G075800 Sobic001G405100--Sobic008G075800 Sobic007G061800 Sobic007G061800 Sobic001G405100--Sobic007G061800 Sobic001G364700 Sobic001G364700 Sobic001G405100--Sobic001G364700 Sobic010G118800 Sobic010G118800 Sobic001G405100--Sobic010G118800 Sobic003G156900--Sobic003G175000 Sobic007G091400 Sobic007G091400 Sobic003G156900--Sobic007G091400 Sobic002G254700 Sobic002G254700 Sobic003G156900--Sobic002G254700 Sobic001G232600 Sobic001G232600 Sobic003G156900--Sobic001G232600 Sobic009G102700 Sobic009G102700 Sobic003G156900--Sobic009G102700 Sobic003G400000 Sobic003G400000 Sobic003G156900--Sobic003G400000 Sobic001G228000 Sobic001G228000 Sobic003G156900--Sobic001G228000 Sobic002G106800 Sobic002G106800 Sobic003G156900--Sobic002G106800 Sobic009G096700 Sobic009G096700 Sobic003G156900--Sobic009G096700 Sobic010G024400--Sobic010G202200 Sobic010G024400--Sobic009G230800 Sobic003G236000 Sobic003G236000 Sobic010G024400--Sobic003G236000 Sobic004G064200 Sobic004G064200 Sobic010G024400--Sobic004G064200 Sobic001G519600 Sobic001G519600 Sobic010G024400--Sobic001G519600 Sobic010G024400--Sobic006G269101 Sobic010G024400--Sobic008G148600 Sobic005G225500 Sobic005G225500 Sobic010G024400--Sobic005G225500 Sobic010G024400--Sobic001G024400 Sobic001G315000 Sobic001G315000 Sobic004G025900--Sobic001G315000 Sobic006G028600 Sobic006G028600 Sobic004G025900--Sobic006G028600 Sobic006G264700 Sobic006G264700 Sobic004G025900--Sobic006G264700 Sobic005G217101 Sobic005G217101 Sobic004G025900--Sobic005G217101 Sobic004G002300 Sobic004G002300 Sobic004G025900--Sobic004G002300 Sobic001G500900 Sobic001G500900 Sobic004G025900--Sobic001G500900 Sobic006G115800 Sobic006G115800 Sobic004G025900--Sobic006G115800 Sobic001G539820 Sobic001G539820 Sobic004G025900--Sobic001G539820 Sobic010G190500 Sobic010G190500 Sobic004G025900--Sobic010G190500 Sobic008G017850--Sobic005G110424 Sobic005G220250 Sobic005G220250 Sobic008G017850--Sobic005G220250 Sobic007G109301 Sobic007G109301 Sobic008G017850--Sobic007G109301 Sobic004G190400 Sobic004G190400 Sobic008G017850--Sobic004G190400 Sobic002G035733 Sobic002G035733 Sobic008G017850--Sobic002G035733 Sobic001G133400 Sobic001G133400 Sobic008G017850--Sobic001G133400 Sobic006G162500 Sobic006G162500 Sobic008G017850--Sobic006G162500 Sobic005G128550 Sobic005G128550 Sobic008G017850--Sobic005G128550 Sobic010G061600 Sobic010G061600 Sobic008G017850--Sobic010G061600
Octagon: transcription factors


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