Gene annotation
Transcriptome id Sobic.009G230800.1
Synonym GA2OX1, GA2ox1;Dw1;Dw1, Sb09g028360, ATGA2OX1
Functional annotation Up-regulation in phyB-1 mutant (PubMedID : 26893475)
inhibiting the nuclear localization of BRASSINOSTEROID INSENSITIVE 2 (PubMedID : 28273925)
decreased the cell proliferation rates (PubMedID : 27329702)
gibberellin 2-beta-dioxygenase, putative, expressed
UniProt C5YVI4
Pfam PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF153
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology K04125; gibberellin 2beta-dioxygenase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G78440 : Arabidopsis thaliana gibberellin 2-oxidase 1
RAP-DB (Rice) LOC_Os05g48700.1 : gibberellin 2-beta-dioxygenase, putative, expressed
MaizeGDB (Corn) Zm00025a044548
Brachypodium KQK04908 , KQK04914 , KQK03260
Barley HORVU3Hr1G029010.3 , HORVU3Hr1G029010.2 , HORVU3Hr1G029010.1 , HORVU3Hr1G029010.7 , HORVU3Hr1G029010.6 , HORVU3Hr1G029010.5 , HORVU3Hr1G029010.4 , HORVU3Hr1G029010.9 , HORVU3Hr1G029010.8 , HORVU1Hr1G086710.1 , HORVU1Hr1G086710.3 , HORVU1Hr1G086710.2 , HORVU1Hr1G076730.1 , HORVU1Hr1G076730.2 , HORVU1Hr1G076730.3 , HORVU1Hr1G076730.4 , HORVU1Hr1G076730.5 , HORVU1Hr1G086810.2 , HORVU1Hr1G086810.1
Wheat TraesCS1A02G392500 , TraesCS1B02G420900 , TraesCS1D02G400800 , TraesCS1B02G420700 , TraesCS1B02G420800 , TraesCS1A02G392600 , TraesCS1D02G400700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G202200 - -
2 Sobic.006G269101 - -
3 Sobic.004G052600 - -
4 Sobic.008G136601 - -
5 Sobic.001G340800 exocyst complex component 6, putative, expressed -
6 Sobic.004G328500 expressed protein -
7 Sobic.008G148600 B3 DNA binding domain containing protein, expressed -
8 Sobic.005G000900 OsFBX103 - F-box domain containing protein, expressed -
9 Sobic.005G221675 - -
10 Sobic.001G143700 cupin domain containing protein, expressed -
11 Sobic.005G140900 OsFBX230 - F-box domain containing protein, expressed -
12 Sobic.006G017700 expressed protein -
13 Sobic.008G138400 expressed protein -
14 Sobic.004G177900 - -
15 Sobic.002G097300 OsFBLD5 - F-box, LRR and FBD domain containing protein, expressed -
16 Sobic.002G156400 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@MDR-like ABC transporter, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
17 Sobic.006G017900 DEFL55 - Defensin and Defensin-like DEFL family, expressed -
18 Sobic.008G036100 expressed protein -
19 Sobic.001G211700 MBTB33 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
20 Sobic.005G189100 transcription factor Dp, putative, expressed -


Gene co-expression network
sample Sobic009G230800 Sobic009G230800 Sobic010G202200 Sobic010G202200 Sobic009G230800--Sobic010G202200 Sobic006G269101 Sobic006G269101 Sobic009G230800--Sobic006G269101 Sobic004G052600 Sobic004G052600 Sobic009G230800--Sobic004G052600 Sobic008G136601 Sobic008G136601 Sobic009G230800--Sobic008G136601 Sobic001G340800 Sobic001G340800 Sobic009G230800--Sobic001G340800 Sobic004G328500 Sobic004G328500 Sobic009G230800--Sobic004G328500 Sobic008G148600 Sobic008G148600 Sobic009G230800--Sobic008G148600 Sobic005G000900 Sobic005G000900 Sobic009G230800--Sobic005G000900 Sobic005G221675 Sobic005G221675 Sobic009G230800--Sobic005G221675 Sobic010G202200--Sobic009G230800 Sobic010G202200--Sobic006G269101 Sobic010G202200--Sobic008G148600 Sobic010G202200--Sobic008G136601 Sobic010G202200--Sobic001G340800 Sobic006G027601 Sobic006G027601 Sobic010G202200--Sobic006G027601 Sobic005G110424 Sobic005G110424 Sobic010G202200--Sobic005G110424 Sobic003G156900 Sobic003G156900 Sobic010G202200--Sobic003G156900 Sobic008G097966 Sobic008G097966 Sobic010G202200--Sobic008G097966 Sobic006G269101--Sobic008G148600 Sobic007G160501 Sobic007G160501 Sobic006G269101--Sobic007G160501 Sobic003G351100 Sobic003G351100 Sobic006G269101--Sobic003G351100 Sobic001G246001 Sobic001G246001 Sobic006G269101--Sobic001G246001 Sobic005G214800 Sobic005G214800 Sobic006G269101--Sobic005G214800 Sobic002G194300 Sobic002G194300 Sobic006G269101--Sobic002G194300 Sobic009G110800 Sobic009G110800 Sobic006G269101--Sobic009G110800 Sobic008G125801 Sobic008G125801 Sobic006G269101--Sobic008G125801 Sobic002G126400 Sobic002G126400 Sobic006G269101--Sobic002G126400 Sobic004G052600--Sobic005G000900 Sobic002G182701 Sobic002G182701 Sobic004G052600--Sobic002G182701 Sobic006G017700 Sobic006G017700 Sobic004G052600--Sobic006G017700 Sobic004G100300 Sobic004G100300 Sobic004G052600--Sobic004G100300 Sobic006G017900 Sobic006G017900 Sobic004G052600--Sobic006G017900 Sobic001G211700 Sobic001G211700 Sobic004G052600--Sobic001G211700 Sobic002G156400 Sobic002G156400 Sobic004G052600--Sobic002G156400 Sobic009G182100 Sobic009G182100 Sobic004G052600--Sobic009G182100 Sobic002G384900 Sobic002G384900 Sobic004G052600--Sobic002G384900 Sobic006G001100 Sobic006G001100 Sobic008G136601--Sobic006G001100 Sobic008G136601--Sobic006G269101 Sobic009G061601 Sobic009G061601 Sobic008G136601--Sobic009G061601 Sobic001G212500 Sobic001G212500 Sobic008G136601--Sobic001G212500 Sobic005G043300 Sobic005G043300 Sobic008G136601--Sobic005G043300 Sobic001G165700 Sobic001G165700 Sobic008G136601--Sobic001G165700 Sobic008G136601--Sobic002G126400 Sobic007G131000 Sobic007G131000 Sobic008G136601--Sobic007G131000 Sobic003G445300 Sobic003G445300 Sobic008G136601--Sobic003G445300 Sobic001G370400 Sobic001G370400 Sobic001G340800--Sobic001G370400 Sobic001G340800--Sobic009G061601 Sobic001G340800--Sobic008G136601 Sobic004G290600 Sobic004G290600 Sobic001G340800--Sobic004G290600 Sobic009G061500 Sobic009G061500 Sobic001G340800--Sobic009G061500 Sobic008G020800 Sobic008G020800 Sobic001G340800--Sobic008G020800 Sobic001G294500 Sobic001G294500 Sobic001G340800--Sobic001G294500 Sobic001G340800--Sobic007G131000 Sobic003G093100 Sobic003G093100 Sobic001G340800--Sobic003G093100 Sobic004G328500--Sobic001G294500 Sobic004G177900 Sobic004G177900 Sobic004G328500--Sobic004G177900 Sobic004G328500--Sobic004G052600 Sobic001G143700 Sobic001G143700 Sobic004G328500--Sobic001G143700 Sobic008G138400 Sobic008G138400 Sobic004G328500--Sobic008G138400 Sobic002G097300 Sobic002G097300 Sobic004G328500--Sobic002G097300 Sobic005G148000 Sobic005G148000 Sobic004G328500--Sobic005G148000 Sobic002G006200 Sobic002G006200 Sobic004G328500--Sobic002G006200 Sobic005G189100 Sobic005G189100 Sobic004G328500--Sobic005G189100 Sobic008G148600--Sobic006G269101 Sobic001G232600 Sobic001G232600 Sobic008G148600--Sobic001G232600 Sobic008G148600--Sobic008G136601 Sobic001G248700 Sobic001G248700 Sobic008G148600--Sobic001G248700 Sobic001G094700 Sobic001G094700 Sobic008G148600--Sobic001G094700 Sobic005G000900--Sobic006G017700 Sobic005G000900--Sobic002G182701 Sobic005G000900--Sobic006G017900 Sobic005G000900--Sobic002G156400 Sobic005G000900--Sobic002G384900 Sobic005G000900--Sobic001G211700 Sobic005G000900--Sobic009G182100 Sobic005G140900 Sobic005G140900 Sobic005G000900--Sobic005G140900 Sobic005G000900--Sobic004G100300 Sobic005G221675--Sobic002G384900 Sobic005G221675--Sobic004G100300 Sobic005G221675--Sobic006G017900 Sobic005G221675--Sobic002G182701 Sobic005G221675--Sobic006G017700 Sobic005G221675--Sobic001G211700 Sobic005G221675--Sobic005G000900 Sobic005G221675--Sobic002G156400 Sobic005G221675--Sobic005G140900
Octagon: transcription factors


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