Gene annotation
Transcriptome id Sobic.001G024400.1
Synonym Sb01g002330
Functional annotation pectinesterase inhibitor domain containing protein, expressed
UniProt C5WTZ8
Pfam PF04043
Panther DB PTHR31707 PTHR31707:SF50
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0004857; enzyme inhibitor activity


Orthologs (automatic annotation)
TAIR AT1G53840 : pectin methylesterase 1
RAP-DB (Rice) LOC_Os03g61510.1 : pectinesterase inhibitor domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008917
Brachypodium -
Barley HORVU5Hr1G115920.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G143700 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
2 Sobic.008G148600 B3 DNA binding domain containing protein, expressed -
3 Sobic.006G269101 - -
4 Sobic.010G202200 - -
5 Sobic.009G230800 Up-regulation in phyB-1 mutant(PubMedID : 26893475)@inhibiting the nuclear localization of BRASSINOSTEROID INSENSITIVE 2(PubMedID : 28273925)@decreased the cell proliferation rates(PubMedID : 27329702)@gibberellin 2-beta-dioxygenase, putative, expressed K04125: gibberellin 2beta-dioxygenase
6 Sobic.008G136601 - -
7 Sobic.005G110424 - -
8 Sobic.006G027601 - -
9 Sobic.003G175000 respiratory burst oxidase, putative, expressed -
10 Sobic.006G001100 ELMO/CED-12 family protein, putative, expressed -
11 Sobic.005G148950 - -
12 Sobic.002G389600 transcription regulator, putative, expressed -
13 Sobic.007G226700 -(PubMedID : 26976818)@dicarboxylate transporter 4(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
14 Sobic.009G061500 - -
15 Sobic.002G126400 - -
16 Sobic.007G154400 emp24/gp25L/p24 family protein, putative, expressed -
17 Sobic.001G519600 - -
18 Sobic.003G236000 CGMC_MAPKCMGC_2.5 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
19 Sobic.003G400000 signal peptide peptidase-like 2B, putative, expressed -
20 Sobic.007G007700 OsFBL38 - F-box domain and LRR containing protein, expressed -


Gene co-expression network
sample Sobic001G024400 Sobic001G024400 Sobic006G143700 Sobic006G143700 Sobic001G024400--Sobic006G143700 Sobic008G148600 Sobic008G148600 Sobic001G024400--Sobic008G148600 Sobic006G269101 Sobic006G269101 Sobic001G024400--Sobic006G269101 Sobic010G202200 Sobic010G202200 Sobic001G024400--Sobic010G202200 Sobic009G230800 Sobic009G230800 Sobic001G024400--Sobic009G230800 Sobic008G136601 Sobic008G136601 Sobic001G024400--Sobic008G136601 Sobic005G110424 Sobic005G110424 Sobic001G024400--Sobic005G110424 Sobic006G027601 Sobic006G027601 Sobic001G024400--Sobic006G027601 Sobic003G175000 Sobic003G175000 Sobic001G024400--Sobic003G175000 Sobic006G143700--Sobic008G148600 Sobic006G143700--Sobic006G269101 Sobic004G120600 Sobic004G120600 Sobic006G143700--Sobic004G120600 Sobic002G126400 Sobic002G126400 Sobic006G143700--Sobic002G126400 Sobic003G218100 Sobic003G218100 Sobic006G143700--Sobic003G218100 Sobic001G094700 Sobic001G094700 Sobic006G143700--Sobic001G094700 Sobic008G148600--Sobic006G269101 Sobic001G232600 Sobic001G232600 Sobic008G148600--Sobic001G232600 Sobic008G148600--Sobic008G136601 Sobic001G248700 Sobic001G248700 Sobic008G148600--Sobic001G248700 Sobic008G148600--Sobic001G094700 Sobic006G269101--Sobic008G148600 Sobic007G160501 Sobic007G160501 Sobic006G269101--Sobic007G160501 Sobic003G351100 Sobic003G351100 Sobic006G269101--Sobic003G351100 Sobic001G246001 Sobic001G246001 Sobic006G269101--Sobic001G246001 Sobic005G214800 Sobic005G214800 Sobic006G269101--Sobic005G214800 Sobic002G194300 Sobic002G194300 Sobic006G269101--Sobic002G194300 Sobic009G110800 Sobic009G110800 Sobic006G269101--Sobic009G110800 Sobic008G125801 Sobic008G125801 Sobic006G269101--Sobic008G125801 Sobic006G269101--Sobic002G126400 Sobic010G202200--Sobic009G230800 Sobic010G202200--Sobic006G269101 Sobic010G202200--Sobic008G148600 Sobic010G202200--Sobic008G136601 Sobic001G340800 Sobic001G340800 Sobic010G202200--Sobic001G340800 Sobic010G202200--Sobic006G027601 Sobic010G202200--Sobic005G110424 Sobic003G156900 Sobic003G156900 Sobic010G202200--Sobic003G156900 Sobic008G097966 Sobic008G097966 Sobic010G202200--Sobic008G097966 Sobic009G230800--Sobic010G202200 Sobic009G230800--Sobic006G269101 Sobic004G052600 Sobic004G052600 Sobic009G230800--Sobic004G052600 Sobic009G230800--Sobic008G136601 Sobic009G230800--Sobic001G340800 Sobic004G328500 Sobic004G328500 Sobic009G230800--Sobic004G328500 Sobic009G230800--Sobic008G148600 Sobic005G000900 Sobic005G000900 Sobic009G230800--Sobic005G000900 Sobic005G221675 Sobic005G221675 Sobic009G230800--Sobic005G221675 Sobic006G001100 Sobic006G001100 Sobic008G136601--Sobic006G001100 Sobic008G136601--Sobic006G269101 Sobic009G061601 Sobic009G061601 Sobic008G136601--Sobic009G061601 Sobic001G212500 Sobic001G212500 Sobic008G136601--Sobic001G212500 Sobic005G043300 Sobic005G043300 Sobic008G136601--Sobic005G043300 Sobic001G165700 Sobic001G165700 Sobic008G136601--Sobic001G165700 Sobic008G136601--Sobic002G126400 Sobic007G131000 Sobic007G131000 Sobic008G136601--Sobic007G131000 Sobic003G445300 Sobic003G445300 Sobic008G136601--Sobic003G445300 Sobic005G110424--Sobic003G156900 Sobic005G185900 Sobic005G185900 Sobic005G110424--Sobic005G185900 Sobic005G110424--Sobic008G148600 Sobic009G061500 Sobic009G061500 Sobic005G110424--Sobic009G061500 Sobic005G110424--Sobic006G027601 Sobic005G054401 Sobic005G054401 Sobic005G110424--Sobic005G054401 Sobic005G110424--Sobic003G175000 Sobic005G110424--Sobic008G136601 Sobic005G110424--Sobic001G094700 Sobic006G027601--Sobic003G175000 Sobic003G333100 Sobic003G333100 Sobic006G027601--Sobic003G333100 Sobic002G254700 Sobic002G254700 Sobic006G027601--Sobic002G254700 Sobic005G003700 Sobic005G003700 Sobic006G027601--Sobic005G003700 Sobic003G420500 Sobic003G420500 Sobic006G027601--Sobic003G420500 Sobic010G276100 Sobic010G276100 Sobic006G027601--Sobic010G276100 Sobic009G175400 Sobic009G175400 Sobic006G027601--Sobic009G175400 Sobic006G027601--Sobic002G126400 Sobic010G040400 Sobic010G040400 Sobic006G027601--Sobic010G040400 Sobic003G175000--Sobic002G254700 Sobic001G528700 Sobic001G528700 Sobic003G175000--Sobic001G528700 Sobic009G102700 Sobic009G102700 Sobic003G175000--Sobic009G102700 Sobic007G222500 Sobic007G222500 Sobic003G175000--Sobic007G222500 Sobic004G166100 Sobic004G166100 Sobic003G175000--Sobic004G166100 Sobic001G252900 Sobic001G252900 Sobic003G175000--Sobic001G252900 Sobic001G348600 Sobic001G348600 Sobic003G175000--Sobic001G348600 Sobic010G252600 Sobic010G252600 Sobic003G175000--Sobic010G252600 Sobic007G057600 Sobic007G057600 Sobic003G175000--Sobic007G057600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.