Gene annotation
Transcriptome id Sobic.001G065200.1
Synonym Sb01g005930
Functional annotation ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
UniProt C5WY67
Pfam PF11955
Panther DB PTHR31476 PTHR31476:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G39120 : Ubiquitin carboxyl-terminal hydrolase family protein
RAP-DB (Rice) LOC_Os03g57270.1 : ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
MaizeGDB (Corn) Zm00025a016633 , Zm00025a004754
Brachypodium -
Barley HORVU5Hr1G103490.21 , HORVU5Hr1G103490.20 , HORVU5Hr1G103490.22 , HORVU5Hr1G103490.6 , HORVU5Hr1G103490.7 , HORVU5Hr1G103490.5 , HORVU5Hr1G103490.2 , HORVU5Hr1G103490.3 , HORVU5Hr1G103490.1 , HORVU5Hr1G103490.8 , HORVU5Hr1G103490.9 , HORVU5Hr1G103490.18 , HORVU5Hr1G103490.19 , HORVU5Hr1G103490.14 , HORVU5Hr1G103490.15 , HORVU5Hr1G103490.16 , HORVU5Hr1G103490.17 , HORVU5Hr1G103490.10 , HORVU5Hr1G103490.11 , HORVU5Hr1G103490.12 , HORVU5Hr1G103490.13
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G082800 GRAM and C2 domains containing protein, putative, expressed -
2 Sobic.004G189000 - -
3 Sobic.006G117700 - -
4 Sobic.010G134650 - -
5 Sobic.007G082200 white-brown complex homolog protein 11, putative, expressed -
6 Sobic.006G071362 - K02021: putative ABC transport system ATP-binding protein
7 Sobic.010G277700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
8 Sobic.010G130601 - -
9 Sobic.010G024400 expressed protein -
10 Sobic.004G194400 expressed protein -
11 Sobic.008G100300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pumilio-family RNA binding repeat domain containing protein, expressed -
12 Sobic.004G140400 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
13 Sobic.001G257800 myosin, putative, expressed K10357: myosin V
14 Sobic.003G213000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
15 Sobic.010G202200 - -
16 Sobic.003G428000 expressed protein -
17 Sobic.001G519600 - -
18 Sobic.010G146000 CSLD5 - cellulose synthase-like family D, expressed -
19 Sobic.008G036600 expressed protein -
20 Sobic.001G405100 BTBT1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed -


Gene co-expression network
sample Sobic001G065200 Sobic001G065200 Sobic004G082800 Sobic004G082800 Sobic001G065200--Sobic004G082800 Sobic004G189000 Sobic004G189000 Sobic001G065200--Sobic004G189000 Sobic006G117700 Sobic006G117700 Sobic001G065200--Sobic006G117700 Sobic010G134650 Sobic010G134650 Sobic001G065200--Sobic010G134650 Sobic007G082200 Sobic007G082200 Sobic001G065200--Sobic007G082200 Sobic006G071362 Sobic006G071362 Sobic001G065200--Sobic006G071362 Sobic010G277700 Sobic010G277700 Sobic001G065200--Sobic010G277700 Sobic010G130601 Sobic010G130601 Sobic001G065200--Sobic010G130601 Sobic010G024400 Sobic010G024400 Sobic001G065200--Sobic010G024400 Sobic004G082800--Sobic006G117700 Sobic004G082800--Sobic010G024400 Sobic010G202200 Sobic010G202200 Sobic004G082800--Sobic010G202200 Sobic004G082800--Sobic010G130601 Sobic005G110424 Sobic005G110424 Sobic004G082800--Sobic005G110424 Sobic009G230800 Sobic009G230800 Sobic004G082800--Sobic009G230800 Sobic001G024400 Sobic001G024400 Sobic004G082800--Sobic001G024400 Sobic004G064200 Sobic004G064200 Sobic004G082800--Sobic004G064200 Sobic001G519600 Sobic001G519600 Sobic004G082800--Sobic001G519600 Sobic004G189000--Sobic006G117700 Sobic004G189000--Sobic006G071362 Sobic003G156900 Sobic003G156900 Sobic004G189000--Sobic003G156900 Sobic009G061500 Sobic009G061500 Sobic004G189000--Sobic009G061500 Sobic004G140400 Sobic004G140400 Sobic004G189000--Sobic004G140400 Sobic006G093600 Sobic006G093600 Sobic004G189000--Sobic006G093600 Sobic001G340800 Sobic001G340800 Sobic004G189000--Sobic001G340800 Sobic001G232600 Sobic001G232600 Sobic004G189000--Sobic001G232600 Sobic004G189000--Sobic010G130601 Sobic006G117700--Sobic004G082800 Sobic006G117700--Sobic010G202200 Sobic001G405100 Sobic001G405100 Sobic006G117700--Sobic001G405100 Sobic006G117700--Sobic003G156900 Sobic006G027601 Sobic006G027601 Sobic006G117700--Sobic006G027601 Sobic006G117700--Sobic005G110424 Sobic006G001100 Sobic006G001100 Sobic006G117700--Sobic006G001100 Sobic006G117700--Sobic001G340800 Sobic006G117700--Sobic009G061500 Sobic010G134650--Sobic006G071362 Sobic001G257800 Sobic001G257800 Sobic010G134650--Sobic001G257800 Sobic003G385300 Sobic003G385300 Sobic010G134650--Sobic003G385300 Sobic007G039200 Sobic007G039200 Sobic010G134650--Sobic007G039200 Sobic009G046900 Sobic009G046900 Sobic010G134650--Sobic009G046900 Sobic008G159701 Sobic008G159701 Sobic010G134650--Sobic008G159701 Sobic003G236000 Sobic003G236000 Sobic010G134650--Sobic003G236000 Sobic010G134650--Sobic006G117700 Sobic010G134650--Sobic010G202200 Sobic006G239700 Sobic006G239700 Sobic007G082200--Sobic006G239700 Sobic010G146000 Sobic010G146000 Sobic007G082200--Sobic010G146000 Sobic008G100300 Sobic008G100300 Sobic007G082200--Sobic008G100300 Sobic007G082200--Sobic001G065200 Sobic001G444900 Sobic001G444900 Sobic007G082200--Sobic001G444900 Sobic003G091600 Sobic003G091600 Sobic007G082200--Sobic003G091600 Sobic004G011900 Sobic004G011900 Sobic007G082200--Sobic004G011900 Sobic008G036600 Sobic008G036600 Sobic007G082200--Sobic008G036600 Sobic007G082200--Sobic004G189000 Sobic004G194400 Sobic004G194400 Sobic006G071362--Sobic004G194400 Sobic003G358600 Sobic003G358600 Sobic006G071362--Sobic003G358600 Sobic006G071362--Sobic001G340800 Sobic006G134500 Sobic006G134500 Sobic006G071362--Sobic006G134500 Sobic006G071362--Sobic006G117700 Sobic002G233600 Sobic002G233600 Sobic006G071362--Sobic002G233600 Sobic006G071362--Sobic010G134650 Sobic003G024100 Sobic003G024100 Sobic006G071362--Sobic003G024100 Sobic006G265800 Sobic006G265800 Sobic006G071362--Sobic006G265800 Sobic010G277700--Sobic006G071362 Sobic010G277700--Sobic004G194400 Sobic010G277700--Sobic006G134500 Sobic010G277700--Sobic010G134650 Sobic010G277700--Sobic009G046900 Sobic008G022400 Sobic008G022400 Sobic010G277700--Sobic008G022400 Sobic010G277700--Sobic004G189000 Sobic010G277700--Sobic010G130601 Sobic010G112600 Sobic010G112600 Sobic010G277700--Sobic010G112600 Sobic010G124900 Sobic010G124900 Sobic010G130601--Sobic010G124900 Sobic010G130601--Sobic006G117700 Sobic010G130601--Sobic001G405100 Sobic002G111100 Sobic002G111100 Sobic010G130601--Sobic002G111100 Sobic001G167600 Sobic001G167600 Sobic010G130601--Sobic001G167600 Sobic006G177700 Sobic006G177700 Sobic010G130601--Sobic006G177700 Sobic010G130601--Sobic003G024100 Sobic008G136601 Sobic008G136601 Sobic010G130601--Sobic008G136601 Sobic010G130601--Sobic006G001100 Sobic010G024400--Sobic010G202200 Sobic010G024400--Sobic009G230800 Sobic010G024400--Sobic003G236000 Sobic010G024400--Sobic004G064200 Sobic010G024400--Sobic001G519600 Sobic006G269101 Sobic006G269101 Sobic010G024400--Sobic006G269101 Sobic008G148600 Sobic008G148600 Sobic010G024400--Sobic008G148600 Sobic005G225500 Sobic005G225500 Sobic010G024400--Sobic005G225500 Sobic010G024400--Sobic001G024400
Octagon: transcription factors


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