Gene annotation
Transcriptome id Sobic.008G036600.1
Synonym Sb08g003160
Functional annotation expressed protein
UniProt A0A1B6PB62
Pfam -
Panther DB PTHR33065 PTHR33065:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os09g03210.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G202200 - -
2 Sobic.003G236000 CGMC_MAPKCMGC_2.5 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
3 Sobic.001G024400 pectinesterase inhibitor domain containing protein, expressed -
4 Sobic.010G024400 expressed protein -
5 Sobic.005G225500 expressed protein -
6 Sobic.005G110424 - -
7 Sobic.007G039200 MYB family transcription factor, putative, expressed -
8 Sobic.005G185500 - -
9 Sobic.009G230800 Up-regulation in phyB-1 mutant(PubMedID : 26893475)@inhibiting the nuclear localization of BRASSINOSTEROID INSENSITIVE 2(PubMedID : 28273925)@decreased the cell proliferation rates(PubMedID : 27329702)@gibberellin 2-beta-dioxygenase, putative, expressed K04125: gibberellin 2beta-dioxygenase
10 Sobic.002G389600 transcription regulator, putative, expressed -
11 Sobic.001G519600 - -
12 Sobic.008G148600 B3 DNA binding domain containing protein, expressed -
13 Sobic.003G024100 MRH1, putative, expressed -
14 Sobic.008G136601 - -
15 Sobic.006G001100 ELMO/CED-12 family protein, putative, expressed -
16 Sobic.006G162500 - -
17 Sobic.004G140400 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
18 Sobic.003G213000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
19 Sobic.008G100600 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
20 Sobic.003G353700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic008G036600 Sobic008G036600 Sobic010G202200 Sobic010G202200 Sobic008G036600--Sobic010G202200 Sobic003G236000 Sobic003G236000 Sobic008G036600--Sobic003G236000 Sobic001G024400 Sobic001G024400 Sobic008G036600--Sobic001G024400 Sobic010G024400 Sobic010G024400 Sobic008G036600--Sobic010G024400 Sobic005G225500 Sobic005G225500 Sobic008G036600--Sobic005G225500 Sobic005G110424 Sobic005G110424 Sobic008G036600--Sobic005G110424 Sobic007G039200 Sobic007G039200 Sobic008G036600--Sobic007G039200 Sobic005G185500 Sobic005G185500 Sobic008G036600--Sobic005G185500 Sobic009G230800 Sobic009G230800 Sobic008G036600--Sobic009G230800 Sobic010G202200--Sobic009G230800 Sobic006G269101 Sobic006G269101 Sobic010G202200--Sobic006G269101 Sobic008G148600 Sobic008G148600 Sobic010G202200--Sobic008G148600 Sobic008G136601 Sobic008G136601 Sobic010G202200--Sobic008G136601 Sobic001G340800 Sobic001G340800 Sobic010G202200--Sobic001G340800 Sobic006G027601 Sobic006G027601 Sobic010G202200--Sobic006G027601 Sobic010G202200--Sobic005G110424 Sobic003G156900 Sobic003G156900 Sobic010G202200--Sobic003G156900 Sobic008G097966 Sobic008G097966 Sobic010G202200--Sobic008G097966 Sobic006G001100 Sobic006G001100 Sobic003G236000--Sobic006G001100 Sobic007G226700 Sobic007G226700 Sobic003G236000--Sobic007G226700 Sobic003G236000--Sobic005G225500 Sobic008G159701 Sobic008G159701 Sobic003G236000--Sobic008G159701 Sobic001G220500 Sobic001G220500 Sobic003G236000--Sobic001G220500 Sobic003G236000--Sobic006G027601 Sobic003G236000--Sobic010G202200 Sobic005G148950 Sobic005G148950 Sobic003G236000--Sobic005G148950 Sobic006G032000 Sobic006G032000 Sobic003G236000--Sobic006G032000 Sobic006G143700 Sobic006G143700 Sobic001G024400--Sobic006G143700 Sobic001G024400--Sobic008G148600 Sobic001G024400--Sobic006G269101 Sobic001G024400--Sobic010G202200 Sobic001G024400--Sobic009G230800 Sobic001G024400--Sobic008G136601 Sobic001G024400--Sobic005G110424 Sobic001G024400--Sobic006G027601 Sobic003G175000 Sobic003G175000 Sobic001G024400--Sobic003G175000 Sobic010G024400--Sobic010G202200 Sobic010G024400--Sobic009G230800 Sobic010G024400--Sobic003G236000 Sobic004G064200 Sobic004G064200 Sobic010G024400--Sobic004G064200 Sobic001G519600 Sobic001G519600 Sobic010G024400--Sobic001G519600 Sobic010G024400--Sobic006G269101 Sobic010G024400--Sobic008G148600 Sobic010G024400--Sobic005G225500 Sobic010G024400--Sobic001G024400 Sobic005G225500--Sobic006G001100 Sobic005G225500--Sobic008G159701 Sobic002G106600 Sobic002G106600 Sobic005G225500--Sobic002G106600 Sobic005G003700 Sobic005G003700 Sobic005G225500--Sobic005G003700 Sobic007G070900 Sobic007G070900 Sobic005G225500--Sobic007G070900 Sobic004G290600 Sobic004G290600 Sobic005G225500--Sobic004G290600 Sobic004G308800 Sobic004G308800 Sobic005G225500--Sobic004G308800 Sobic007G176900 Sobic007G176900 Sobic005G225500--Sobic007G176900 Sobic006G205400 Sobic006G205400 Sobic005G225500--Sobic006G205400 Sobic005G110424--Sobic003G156900 Sobic005G185900 Sobic005G185900 Sobic005G110424--Sobic005G185900 Sobic005G110424--Sobic008G148600 Sobic009G061500 Sobic009G061500 Sobic005G110424--Sobic009G061500 Sobic005G110424--Sobic006G027601 Sobic005G054401 Sobic005G054401 Sobic005G110424--Sobic005G054401 Sobic005G110424--Sobic003G175000 Sobic005G110424--Sobic008G136601 Sobic001G094700 Sobic001G094700 Sobic005G110424--Sobic001G094700 Sobic007G039200--Sobic001G340800 Sobic002G389600 Sobic002G389600 Sobic007G039200--Sobic002G389600 Sobic007G039200--Sobic009G061500 Sobic007G039200--Sobic008G136601 Sobic007G039200--Sobic009G230800 Sobic007G039200--Sobic004G290600 Sobic008G166100 Sobic008G166100 Sobic007G039200--Sobic008G166100 Sobic001G384200 Sobic001G384200 Sobic007G039200--Sobic001G384200 Sobic007G039200--Sobic008G159701 Sobic005G185500--Sobic002G389600 Sobic003G385300 Sobic003G385300 Sobic005G185500--Sobic003G385300 Sobic006G093600 Sobic006G093600 Sobic005G185500--Sobic006G093600 Sobic005G185500--Sobic007G039200 Sobic005G185500--Sobic006G001100 Sobic005G185500--Sobic005G225500 Sobic002G102300 Sobic002G102300 Sobic005G185500--Sobic002G102300 Sobic006G162500 Sobic006G162500 Sobic005G185500--Sobic006G162500 Sobic003G402800 Sobic003G402800 Sobic005G185500--Sobic003G402800 Sobic009G230800--Sobic010G202200 Sobic009G230800--Sobic006G269101 Sobic004G052600 Sobic004G052600 Sobic009G230800--Sobic004G052600 Sobic009G230800--Sobic008G136601 Sobic009G230800--Sobic001G340800 Sobic004G328500 Sobic004G328500 Sobic009G230800--Sobic004G328500 Sobic009G230800--Sobic008G148600 Sobic005G000900 Sobic005G000900 Sobic009G230800--Sobic005G000900 Sobic005G221675 Sobic005G221675 Sobic009G230800--Sobic005G221675
Octagon: transcription factors


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