Gene annotation
Transcriptome id Sobic.003G353700.3,Sobic.003G353700.2,Sobic.003G353700.4
Synonym Sb03g039610, LUX, PCL1
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
MYB family transcription factor, putative, expressed
UniProt Q4H2A8 , A0A1B6Q6Y2 , A0A1B6Q6X8
Pfam PF00249
Panther DB PTHR31442 PTHR31442:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G46640 : Homeodomain-like superfamily protein
RAP-DB (Rice) LOC_Os01g62660.1 : MYB family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a026879
Brachypodium KQK10541 , KQK10542 , PNT73669
Barley HORVU3Hr1G114970.2 , HORVU3Hr1G114970.1 , HORVU3Hr1G086000.1
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G353700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G192400 zinc ion binding protein, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
2 Sobic.008G036600 expressed protein -
3 Sobic.005G063200 expressed protein -
4 Sobic.001G024400 pectinesterase inhibitor domain containing protein, expressed -
5 Sobic.007G039200 MYB family transcription factor, putative, expressed -
6 Sobic.010G181600 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein
7 Sobic.003G236000 CGMC_MAPKCMGC_2.5 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
8 Sobic.004G074600 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.008G006000 expressed protein -
10 Sobic.003G117800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
11 Sobic.010G024400 expressed protein -
12 Sobic.002G389600 transcription regulator, putative, expressed -
13 Sobic.010G202200 - -
14 Sobic.010G255900 DNL zinc finger domain containing protein, putative, expressed K17808: ZIM17, DNLZ, mitochondrial protein import protein ZIM17
15 Sobic.005G185500 - -
16 Sobic.001G057400 expressed protein -
17 Sobic.005G225500 expressed protein -
18 Sobic.003G385300 Ser/Thr protein phosphatase family protein, putative, expressed -
19 Sobic.008G166100 glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
20 Sobic.001G504500 expressed protein -


Gene co-expression network
sample Sobic003G353700 Sobic003G353700 Sobic007G192400 Sobic007G192400 Sobic003G353700--Sobic007G192400 Sobic008G036600 Sobic008G036600 Sobic003G353700--Sobic008G036600 Sobic005G063200 Sobic005G063200 Sobic003G353700--Sobic005G063200 Sobic001G024400 Sobic001G024400 Sobic003G353700--Sobic001G024400 Sobic007G039200 Sobic007G039200 Sobic003G353700--Sobic007G039200 Sobic010G181600 Sobic010G181600 Sobic003G353700--Sobic010G181600 Sobic003G236000 Sobic003G236000 Sobic003G353700--Sobic003G236000 Sobic004G074600 Sobic004G074600 Sobic003G353700--Sobic004G074600 Sobic008G006000 Sobic008G006000 Sobic003G353700--Sobic008G006000 Sobic007G192400--Sobic003G353700 Sobic007G192400--Sobic008G006000 Sobic007G077532 Sobic007G077532 Sobic007G192400--Sobic007G077532 Sobic007G192400--Sobic010G181600 Sobic009G252300 Sobic009G252300 Sobic007G192400--Sobic009G252300 Sobic004G259300 Sobic004G259300 Sobic007G192400--Sobic004G259300 Sobic002G203600 Sobic002G203600 Sobic007G192400--Sobic002G203600 Sobic007G192400--Sobic008G036600 Sobic004G141400 Sobic004G141400 Sobic007G192400--Sobic004G141400 Sobic010G202200 Sobic010G202200 Sobic008G036600--Sobic010G202200 Sobic008G036600--Sobic003G236000 Sobic008G036600--Sobic001G024400 Sobic010G024400 Sobic010G024400 Sobic008G036600--Sobic010G024400 Sobic005G225500 Sobic005G225500 Sobic008G036600--Sobic005G225500 Sobic005G110424 Sobic005G110424 Sobic008G036600--Sobic005G110424 Sobic008G036600--Sobic007G039200 Sobic005G185500 Sobic005G185500 Sobic008G036600--Sobic005G185500 Sobic009G230800 Sobic009G230800 Sobic008G036600--Sobic009G230800 Sobic001G384200 Sobic001G384200 Sobic005G063200--Sobic001G384200 Sobic001G280500 Sobic001G280500 Sobic005G063200--Sobic001G280500 Sobic008G166100 Sobic008G166100 Sobic005G063200--Sobic008G166100 Sobic003G211800 Sobic003G211800 Sobic005G063200--Sobic003G211800 Sobic001G149000 Sobic001G149000 Sobic005G063200--Sobic001G149000 Sobic001G076600 Sobic001G076600 Sobic005G063200--Sobic001G076600 Sobic002G097200 Sobic002G097200 Sobic005G063200--Sobic002G097200 Sobic003G385300 Sobic003G385300 Sobic005G063200--Sobic003G385300 Sobic009G106700 Sobic009G106700 Sobic005G063200--Sobic009G106700 Sobic006G143700 Sobic006G143700 Sobic001G024400--Sobic006G143700 Sobic008G148600 Sobic008G148600 Sobic001G024400--Sobic008G148600 Sobic006G269101 Sobic006G269101 Sobic001G024400--Sobic006G269101 Sobic001G024400--Sobic010G202200 Sobic001G024400--Sobic009G230800 Sobic008G136601 Sobic008G136601 Sobic001G024400--Sobic008G136601 Sobic001G024400--Sobic005G110424 Sobic006G027601 Sobic006G027601 Sobic001G024400--Sobic006G027601 Sobic003G175000 Sobic003G175000 Sobic001G024400--Sobic003G175000 Sobic001G340800 Sobic001G340800 Sobic007G039200--Sobic001G340800 Sobic002G389600 Sobic002G389600 Sobic007G039200--Sobic002G389600 Sobic009G061500 Sobic009G061500 Sobic007G039200--Sobic009G061500 Sobic007G039200--Sobic008G136601 Sobic007G039200--Sobic009G230800 Sobic004G290600 Sobic004G290600 Sobic007G039200--Sobic004G290600 Sobic007G039200--Sobic008G166100 Sobic007G039200--Sobic001G384200 Sobic008G159701 Sobic008G159701 Sobic007G039200--Sobic008G159701 Sobic003G058500 Sobic003G058500 Sobic010G181600--Sobic003G058500 Sobic001G424800 Sobic001G424800 Sobic010G181600--Sobic001G424800 Sobic003G117800 Sobic003G117800 Sobic010G181600--Sobic003G117800 Sobic001G475300 Sobic001G475300 Sobic010G181600--Sobic001G475300 Sobic010G181600--Sobic008G006000 Sobic010G181600--Sobic003G353700 Sobic007G218600 Sobic007G218600 Sobic010G181600--Sobic007G218600 Sobic004G004100 Sobic004G004100 Sobic010G181600--Sobic004G004100 Sobic003G250400 Sobic003G250400 Sobic010G181600--Sobic003G250400 Sobic006G001100 Sobic006G001100 Sobic003G236000--Sobic006G001100 Sobic007G226700 Sobic007G226700 Sobic003G236000--Sobic007G226700 Sobic003G236000--Sobic005G225500 Sobic003G236000--Sobic008G159701 Sobic001G220500 Sobic001G220500 Sobic003G236000--Sobic001G220500 Sobic003G236000--Sobic006G027601 Sobic003G236000--Sobic010G202200 Sobic005G148950 Sobic005G148950 Sobic003G236000--Sobic005G148950 Sobic006G032000 Sobic006G032000 Sobic003G236000--Sobic006G032000 Sobic004G074600--Sobic002G389600 Sobic004G074600--Sobic007G039200 Sobic006G171600 Sobic006G171600 Sobic004G074600--Sobic006G171600 Sobic004G250800 Sobic004G250800 Sobic004G074600--Sobic004G250800 Sobic004G074600--Sobic008G166100 Sobic004G062200 Sobic004G062200 Sobic004G074600--Sobic004G062200 Sobic001G135800 Sobic001G135800 Sobic004G074600--Sobic001G135800 Sobic002G414800 Sobic002G414800 Sobic004G074600--Sobic002G414800 Sobic004G279200 Sobic004G279200 Sobic004G074600--Sobic004G279200 Sobic008G006000--Sobic010G181600 Sobic008G006000--Sobic007G192400 Sobic008G006000--Sobic003G353700 Sobic008G006000--Sobic004G141400 Sobic008G006000--Sobic007G077532 Sobic010G255900 Sobic010G255900 Sobic008G006000--Sobic010G255900 Sobic008G006000--Sobic005G185500 Sobic008G006000--Sobic003G117800 Sobic008G006000--Sobic001G280500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.