Gene annotation
Transcriptome id Sobic.007G192400.1
Synonym Sb07g026135
Functional annotation zinc ion binding protein, putative, expressed
UniProt C5YHR9
Pfam -
Panther DB PTHR11618 PTHR11618:SF23
NCBI CDD KOG1598; Transcription initiation factor TFIIIB, Brf1 subunit
KEGG Orthology K15196; BRF1, transcription factor IIIB 90 kDa subunit
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0006352DNA-templated transcription, initiation


Orthologs (automatic annotation)
TAIR AT4G35540 : zinc ion binding;transcription regulators
RAP-DB (Rice) LOC_Os08g42020.1 : zinc ion binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a030412
Brachypodium PNT68498 , PNT66947 , KQJ99137 , KQJ99136
Barley HORVU7Hr1G054520.3 , HORVU7Hr1G054520.2 , HORVU7Hr1G054520.1 , HORVU7Hr1G054520.4
Wheat TraesCS5B02G210200 , TraesCS7B02G162800
Populus -


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cDNA sequences
Sobic.007G192400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G353700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
2 Sobic.008G006000 expressed protein -
3 Sobic.007G077532 - K08597: SENP8, NEDP1, sentrin-specific protease 8
4 Sobic.010G181600 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein
5 Sobic.009G252300 expressed protein -
6 Sobic.004G259300 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin
7 Sobic.002G203600 protein binding protein, putative, expressed K11975: E3 ubiquitin-protein ligase RNF144
8 Sobic.008G036600 expressed protein -
9 Sobic.004G141400 START domain containing protein, putative, expressed -
10 Sobic.003G117800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
11 Sobic.003G213000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
12 Sobic.001G057400 expressed protein -
13 Sobic.005G123400 expressed protein -
14 Sobic.001G305900 GTP binding protein, putative, expressed -
15 Sobic.007G158900 expressed protein -
16 Sobic.005G063200 expressed protein -
17 Sobic.007G218600 phosphoribosyl transferase, putative, expressed K00761: upp, uracil phosphoribosyltransferase
18 Sobic.003G250400 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.003G091600 expressed protein -
20 Sobic.004G004100 nucleic acid binding protein, putative, expressed -


Gene co-expression network
sample Sobic007G192400 Sobic007G192400 Sobic003G353700 Sobic003G353700 Sobic007G192400--Sobic003G353700 Sobic008G006000 Sobic008G006000 Sobic007G192400--Sobic008G006000 Sobic007G077532 Sobic007G077532 Sobic007G192400--Sobic007G077532 Sobic010G181600 Sobic010G181600 Sobic007G192400--Sobic010G181600 Sobic009G252300 Sobic009G252300 Sobic007G192400--Sobic009G252300 Sobic004G259300 Sobic004G259300 Sobic007G192400--Sobic004G259300 Sobic002G203600 Sobic002G203600 Sobic007G192400--Sobic002G203600 Sobic008G036600 Sobic008G036600 Sobic007G192400--Sobic008G036600 Sobic004G141400 Sobic004G141400 Sobic007G192400--Sobic004G141400 Sobic003G353700--Sobic007G192400 Sobic003G353700--Sobic008G036600 Sobic005G063200 Sobic005G063200 Sobic003G353700--Sobic005G063200 Sobic001G024400 Sobic001G024400 Sobic003G353700--Sobic001G024400 Sobic007G039200 Sobic007G039200 Sobic003G353700--Sobic007G039200 Sobic003G353700--Sobic010G181600 Sobic003G236000 Sobic003G236000 Sobic003G353700--Sobic003G236000 Sobic004G074600 Sobic004G074600 Sobic003G353700--Sobic004G074600 Sobic003G353700--Sobic008G006000 Sobic008G006000--Sobic010G181600 Sobic008G006000--Sobic007G192400 Sobic008G006000--Sobic003G353700 Sobic008G006000--Sobic004G141400 Sobic008G006000--Sobic007G077532 Sobic010G255900 Sobic010G255900 Sobic008G006000--Sobic010G255900 Sobic005G185500 Sobic005G185500 Sobic008G006000--Sobic005G185500 Sobic003G117800 Sobic003G117800 Sobic008G006000--Sobic003G117800 Sobic001G280500 Sobic001G280500 Sobic008G006000--Sobic001G280500 Sobic007G077532--Sobic004G141400 Sobic001G057400 Sobic001G057400 Sobic007G077532--Sobic001G057400 Sobic007G077532--Sobic007G192400 Sobic004G004100 Sobic004G004100 Sobic007G077532--Sobic004G004100 Sobic007G077532--Sobic005G185500 Sobic007G077532--Sobic010G181600 Sobic007G077532--Sobic003G353700 Sobic007G077532--Sobic008G006000 Sobic007G077532--Sobic003G117800 Sobic003G058500 Sobic003G058500 Sobic010G181600--Sobic003G058500 Sobic001G424800 Sobic001G424800 Sobic010G181600--Sobic001G424800 Sobic010G181600--Sobic003G117800 Sobic001G475300 Sobic001G475300 Sobic010G181600--Sobic001G475300 Sobic010G181600--Sobic008G006000 Sobic010G181600--Sobic003G353700 Sobic007G218600 Sobic007G218600 Sobic010G181600--Sobic007G218600 Sobic010G181600--Sobic004G004100 Sobic003G250400 Sobic003G250400 Sobic010G181600--Sobic003G250400 Sobic003G428000 Sobic003G428000 Sobic009G252300--Sobic003G428000 Sobic003G190200 Sobic003G190200 Sobic009G252300--Sobic003G190200 Sobic001G149000 Sobic001G149000 Sobic009G252300--Sobic001G149000 Sobic001G141400 Sobic001G141400 Sobic009G252300--Sobic001G141400 Sobic005G123400 Sobic005G123400 Sobic009G252300--Sobic005G123400 Sobic009G252300--Sobic003G117800 Sobic010G134650 Sobic010G134650 Sobic009G252300--Sobic010G134650 Sobic009G252300--Sobic007G192400 Sobic008G152700 Sobic008G152700 Sobic009G252300--Sobic008G152700 Sobic004G218300 Sobic004G218300 Sobic004G259300--Sobic004G218300 Sobic004G259300--Sobic004G141400 Sobic004G259300--Sobic007G192400 Sobic004G259300--Sobic003G250400 Sobic007G184800 Sobic007G184800 Sobic004G259300--Sobic007G184800 Sobic003G005100 Sobic003G005100 Sobic004G259300--Sobic003G005100 Sobic004G259300--Sobic007G077532 Sobic007G177500 Sobic007G177500 Sobic004G259300--Sobic007G177500 Sobic004G259300--Sobic008G006000 Sobic002G203600--Sobic005G123400 Sobic002G203600--Sobic007G192400 Sobic003G091600 Sobic003G091600 Sobic002G203600--Sobic003G091600 Sobic002G203600--Sobic004G259300 Sobic002G203600--Sobic003G353700 Sobic009G227100 Sobic009G227100 Sobic002G203600--Sobic009G227100 Sobic010G237650 Sobic010G237650 Sobic002G203600--Sobic010G237650 Sobic002G203600--Sobic007G184800 Sobic001G521700 Sobic001G521700 Sobic002G203600--Sobic001G521700 Sobic010G202200 Sobic010G202200 Sobic008G036600--Sobic010G202200 Sobic008G036600--Sobic003G236000 Sobic008G036600--Sobic001G024400 Sobic010G024400 Sobic010G024400 Sobic008G036600--Sobic010G024400 Sobic005G225500 Sobic005G225500 Sobic008G036600--Sobic005G225500 Sobic005G110424 Sobic005G110424 Sobic008G036600--Sobic005G110424 Sobic008G036600--Sobic007G039200 Sobic008G036600--Sobic005G185500 Sobic009G230800 Sobic009G230800 Sobic008G036600--Sobic009G230800 Sobic004G141400--Sobic007G077532 Sobic004G141400--Sobic008G006000 Sobic004G141400--Sobic010G181600 Sobic004G141400--Sobic004G259300 Sobic004G141400--Sobic007G192400 Sobic001G356200 Sobic001G356200 Sobic004G141400--Sobic001G356200 Sobic004G141400--Sobic004G004100 Sobic004G141400--Sobic003G117800 Sobic004G141400--Sobic003G353700
Octagon: transcription factors


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