Gene annotation
Transcriptome id Sobic.004G011900.1
Synonym Sb04g001180, PDE321, YSL5
Functional annotation -
UniProt C5XSB0
Pfam PF03169
Panther DB PTHR31645 PTHR31645:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65730 : YELLOW STRIPE like 7
RAP-DB (Rice) LOC_Os02g02460.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a057370 , Zm00025a035063 , Zm00025a035062
Brachypodium KQJ92906 , KQJ85264
Barley HORVU2Hr1G120250.1 , HORVU2Hr1G120250.2 , HORVU6Hr1G009010.2 , HORVU6Hr1G008970.1 , HORVU6Hr1G008970.2 , HORVU6Hr1G008970.3
Wheat TraesCS6B02G059100 , TraesCS2D02G554800 , TraesCS2A02G553300 , TraesCS6A02G043100 , TraesCS2B02G585300 , TraesCS6D02G049900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G146000 CSLD5 - cellulose synthase-like family D, expressed -
2 Sobic.008G100600 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
3 Sobic.008G100300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pumilio-family RNA binding repeat domain containing protein, expressed -
4 Sobic.003G213000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
5 Sobic.004G082800 GRAM and C2 domains containing protein, putative, expressed -
6 Sobic.008G036600 expressed protein -
7 Sobic.007G082200 white-brown complex homolog protein 11, putative, expressed -
8 Sobic.005G110424 - -
9 Sobic.001G405100 BTBT1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed -
10 Sobic.010G134650 - -
11 Sobic.008G017850 - -
12 Sobic.007G192400 zinc ion binding protein, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
13 Sobic.010G202200 - -
14 Sobic.010G024400 expressed protein -
15 Sobic.001G444900 STRUBBELIG-RECEPTOR FAMILY 7("PubMedID : 26759170,PubMedID : 24597475")@STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed -
16 Sobic.006G239700 plant protein of unknown function domain containing protein, expressed -
17 Sobic.006G117700 - -
18 Sobic.003G353700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
19 Sobic.004G138750 - -
20 Sobic.007G142600 DUF593 domain containing protein, expressed -


Gene co-expression network
sample Sobic004G011900 Sobic004G011900 Sobic010G146000 Sobic010G146000 Sobic004G011900--Sobic010G146000 Sobic008G100600 Sobic008G100600 Sobic004G011900--Sobic008G100600 Sobic008G100300 Sobic008G100300 Sobic004G011900--Sobic008G100300 Sobic003G213000 Sobic003G213000 Sobic004G011900--Sobic003G213000 Sobic004G082800 Sobic004G082800 Sobic004G011900--Sobic004G082800 Sobic008G036600 Sobic008G036600 Sobic004G011900--Sobic008G036600 Sobic007G082200 Sobic007G082200 Sobic004G011900--Sobic007G082200 Sobic005G110424 Sobic005G110424 Sobic004G011900--Sobic005G110424 Sobic001G405100 Sobic001G405100 Sobic004G011900--Sobic001G405100 Sobic010G146000--Sobic004G011900 Sobic010G146000--Sobic008G100600 Sobic010G146000--Sobic008G100300 Sobic010G146000--Sobic003G213000 Sobic010G146000--Sobic001G405100 Sobic010G146000--Sobic005G110424 Sobic010G146000--Sobic004G082800 Sobic010G202200 Sobic010G202200 Sobic010G146000--Sobic010G202200 Sobic010G146000--Sobic008G036600 Sobic008G100600--Sobic005G110424 Sobic008G100600--Sobic010G202200 Sobic008G100600--Sobic010G146000 Sobic001G024400 Sobic001G024400 Sobic008G100600--Sobic001G024400 Sobic008G100600--Sobic001G405100 Sobic003G156900 Sobic003G156900 Sobic008G100600--Sobic003G156900 Sobic010G024400 Sobic010G024400 Sobic008G100600--Sobic010G024400 Sobic004G025900 Sobic004G025900 Sobic008G100600--Sobic004G025900 Sobic008G017850 Sobic008G017850 Sobic008G100600--Sobic008G017850 Sobic008G100300--Sobic010G146000 Sobic004G189000 Sobic004G189000 Sobic008G100300--Sobic004G189000 Sobic008G100300--Sobic003G213000 Sobic010G277700 Sobic010G277700 Sobic008G100300--Sobic010G277700 Sobic008G100300--Sobic004G011900 Sobic008G100300--Sobic007G082200 Sobic010G134650 Sobic010G134650 Sobic008G100300--Sobic010G134650 Sobic006G117700 Sobic006G117700 Sobic008G100300--Sobic006G117700 Sobic008G100300--Sobic008G100600 Sobic008G155500 Sobic008G155500 Sobic003G213000--Sobic008G155500 Sobic003G213000--Sobic010G202200 Sobic002G382300 Sobic002G382300 Sobic003G213000--Sobic002G382300 Sobic001G519600 Sobic001G519600 Sobic003G213000--Sobic001G519600 Sobic009G230800 Sobic009G230800 Sobic003G213000--Sobic009G230800 Sobic003G213000--Sobic010G024400 Sobic003G213000--Sobic005G110424 Sobic003G213000--Sobic008G100600 Sobic003G213000--Sobic006G117700 Sobic004G082800--Sobic006G117700 Sobic004G082800--Sobic010G024400 Sobic004G082800--Sobic010G202200 Sobic010G130601 Sobic010G130601 Sobic004G082800--Sobic010G130601 Sobic004G082800--Sobic005G110424 Sobic004G082800--Sobic009G230800 Sobic004G082800--Sobic001G024400 Sobic004G064200 Sobic004G064200 Sobic004G082800--Sobic004G064200 Sobic004G082800--Sobic001G519600 Sobic008G036600--Sobic010G202200 Sobic003G236000 Sobic003G236000 Sobic008G036600--Sobic003G236000 Sobic008G036600--Sobic001G024400 Sobic008G036600--Sobic010G024400 Sobic005G225500 Sobic005G225500 Sobic008G036600--Sobic005G225500 Sobic008G036600--Sobic005G110424 Sobic007G039200 Sobic007G039200 Sobic008G036600--Sobic007G039200 Sobic005G185500 Sobic005G185500 Sobic008G036600--Sobic005G185500 Sobic008G036600--Sobic009G230800 Sobic006G239700 Sobic006G239700 Sobic007G082200--Sobic006G239700 Sobic007G082200--Sobic010G146000 Sobic007G082200--Sobic008G100300 Sobic001G065200 Sobic001G065200 Sobic007G082200--Sobic001G065200 Sobic001G444900 Sobic001G444900 Sobic007G082200--Sobic001G444900 Sobic003G091600 Sobic003G091600 Sobic007G082200--Sobic003G091600 Sobic007G082200--Sobic004G011900 Sobic007G082200--Sobic008G036600 Sobic007G082200--Sobic004G189000 Sobic005G110424--Sobic003G156900 Sobic005G185900 Sobic005G185900 Sobic005G110424--Sobic005G185900 Sobic008G148600 Sobic008G148600 Sobic005G110424--Sobic008G148600 Sobic009G061500 Sobic009G061500 Sobic005G110424--Sobic009G061500 Sobic006G027601 Sobic006G027601 Sobic005G110424--Sobic006G027601 Sobic005G054401 Sobic005G054401 Sobic005G110424--Sobic005G054401 Sobic003G175000 Sobic003G175000 Sobic005G110424--Sobic003G175000 Sobic008G136601 Sobic008G136601 Sobic005G110424--Sobic008G136601 Sobic001G094700 Sobic001G094700 Sobic005G110424--Sobic001G094700 Sobic001G405100--Sobic003G156900 Sobic005G110559 Sobic005G110559 Sobic001G405100--Sobic005G110559 Sobic007G226700 Sobic007G226700 Sobic001G405100--Sobic007G226700 Sobic010G274100 Sobic010G274100 Sobic001G405100--Sobic010G274100 Sobic002G323000 Sobic002G323000 Sobic001G405100--Sobic002G323000 Sobic008G075800 Sobic008G075800 Sobic001G405100--Sobic008G075800 Sobic007G061800 Sobic007G061800 Sobic001G405100--Sobic007G061800 Sobic001G364700 Sobic001G364700 Sobic001G405100--Sobic001G364700 Sobic010G118800 Sobic010G118800 Sobic001G405100--Sobic010G118800
Octagon: transcription factors


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