Gene annotation
Transcriptome id Sobic.001G052100.1,Sobic.001G052100.2,Sobic.001G052100.3
Synonym Sb01g004770, OTP82
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide domain containing protein, putative, expressed
UniProt A0A1Z5S4H4
Pfam PF12854 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF731
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G37380 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os04g01990.1 : pentatricopeptide domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a008604
Brachypodium PNT67384 , PNT67385 , KQJ96712
Barley HORVU1Hr1G065970.2 , HORVU1Hr1G065970.3 , HORVU1Hr1G065970.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G123400 expressed protein -
2 Sobic.008G039000 expressed protein -
3 Sobic.001G203600 PPR repeat domain containing protein, putative, expressed -
4 Sobic.010G112600 integral membrane protein, putative, expressed -
5 Sobic.006G237500 PPR repeat domain containing protein, putative, expressed -
6 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.009G227100 expressed protein -
8 Sobic.001G478900 pentatricopeptide, putative, expressed -
9 Sobic.008G095900 ATP binding protein, putative, expressed K17592: sacsin
10 Sobic.003G368400 sterol 3-beta-glucosyltransferase, putative, expressed K05841: sterol 3beta-glucosyltransferase
11 Sobic.004G051600 EMB2758, putative, expressed -
12 Sobic.010G086300 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
13 Sobic.003G113400 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
14 Sobic.010G277700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
15 Sobic.003G297700 lipid-A-disaccharide synthase family protein, expressed K00748: lipid-A-disaccharide synthase
16 Sobic.009G047700 E3 ubiquitin-protein ligase SINA-like 2, putative, expressed -
17 Sobic.001G385000 nucleoside-triphosphatase, putative, expressed K14641: apyrase
18 Sobic.003G393200 expressed protein -
19 Sobic.006G220400 exonuclease, putative, expressed -
20 Sobic.007G140100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial


Gene co-expression network
sample Sobic001G052100 Sobic001G052100 Sobic005G123400 Sobic005G123400 Sobic001G052100--Sobic005G123400 Sobic008G039000 Sobic008G039000 Sobic001G052100--Sobic008G039000 Sobic001G203600 Sobic001G203600 Sobic001G052100--Sobic001G203600 Sobic010G112600 Sobic010G112600 Sobic001G052100--Sobic010G112600 Sobic006G237500 Sobic006G237500 Sobic001G052100--Sobic006G237500 Sobic006G262800 Sobic006G262800 Sobic001G052100--Sobic006G262800 Sobic009G227100 Sobic009G227100 Sobic001G052100--Sobic009G227100 Sobic001G478900 Sobic001G478900 Sobic001G052100--Sobic001G478900 Sobic008G095900 Sobic008G095900 Sobic001G052100--Sobic008G095900 Sobic005G123400--Sobic006G237500 Sobic005G123400--Sobic010G112600 Sobic003G393200 Sobic003G393200 Sobic005G123400--Sobic003G393200 Sobic001G043200 Sobic001G043200 Sobic005G123400--Sobic001G043200 Sobic005G123400--Sobic009G227100 Sobic009G252300 Sobic009G252300 Sobic005G123400--Sobic009G252300 Sobic007G030100 Sobic007G030100 Sobic005G123400--Sobic007G030100 Sobic003G190200 Sobic003G190200 Sobic005G123400--Sobic003G190200 Sobic003G368400 Sobic003G368400 Sobic005G123400--Sobic003G368400 Sobic008G039000--Sobic001G052100 Sobic003G113400 Sobic003G113400 Sobic008G039000--Sobic003G113400 Sobic008G039000--Sobic009G227100 Sobic007G030600 Sobic007G030600 Sobic008G039000--Sobic007G030600 Sobic009G047700 Sobic009G047700 Sobic008G039000--Sobic009G047700 Sobic009G116400 Sobic009G116400 Sobic008G039000--Sobic009G116400 Sobic008G039000--Sobic005G123400 Sobic007G087900 Sobic007G087900 Sobic008G039000--Sobic007G087900 Sobic008G039000--Sobic006G262800 Sobic010G086300 Sobic010G086300 Sobic001G203600--Sobic010G086300 Sobic001G117900 Sobic001G117900 Sobic001G203600--Sobic001G117900 Sobic007G204000 Sobic007G204000 Sobic001G203600--Sobic007G204000 Sobic001G203600--Sobic001G052100 Sobic008G072500 Sobic008G072500 Sobic001G203600--Sobic008G072500 Sobic007G226800 Sobic007G226800 Sobic001G203600--Sobic007G226800 Sobic002G182000 Sobic002G182000 Sobic001G203600--Sobic002G182000 Sobic006G220400 Sobic006G220400 Sobic001G203600--Sobic006G220400 Sobic009G063800 Sobic009G063800 Sobic001G203600--Sobic009G063800 Sobic010G112600--Sobic005G123400 Sobic003G117800 Sobic003G117800 Sobic010G112600--Sobic003G117800 Sobic004G194400 Sobic004G194400 Sobic010G112600--Sobic004G194400 Sobic010G277700 Sobic010G277700 Sobic010G112600--Sobic010G277700 Sobic010G112600--Sobic003G190200 Sobic010G112600--Sobic009G252300 Sobic003G394500 Sobic003G394500 Sobic010G112600--Sobic003G394500 Sobic010G112600--Sobic006G237500 Sobic008G155400 Sobic008G155400 Sobic010G112600--Sobic008G155400 Sobic006G237500--Sobic005G123400 Sobic006G237500--Sobic003G393200 Sobic006G237500--Sobic007G030100 Sobic006G237500--Sobic010G112600 Sobic004G353300 Sobic004G353300 Sobic006G237500--Sobic004G353300 Sobic006G237500--Sobic001G052100 Sobic001G051400 Sobic001G051400 Sobic006G237500--Sobic001G051400 Sobic003G194800 Sobic003G194800 Sobic006G237500--Sobic003G194800 Sobic004G215600 Sobic004G215600 Sobic006G237500--Sobic004G215600 Sobic010G068900 Sobic010G068900 Sobic006G262800--Sobic010G068900 Sobic009G154900 Sobic009G154900 Sobic006G262800--Sobic009G154900 Sobic006G262800--Sobic001G478900 Sobic004G256900 Sobic004G256900 Sobic006G262800--Sobic004G256900 Sobic002G172500 Sobic002G172500 Sobic006G262800--Sobic002G172500 Sobic008G163400 Sobic008G163400 Sobic006G262800--Sobic008G163400 Sobic006G262800--Sobic001G052100 Sobic001G268300 Sobic001G268300 Sobic006G262800--Sobic001G268300 Sobic004G241000 Sobic004G241000 Sobic006G262800--Sobic004G241000 Sobic009G227100--Sobic005G123400 Sobic009G227100--Sobic001G043200 Sobic009G199500 Sobic009G199500 Sobic009G227100--Sobic009G199500 Sobic009G227100--Sobic006G220400 Sobic009G227100--Sobic009G252300 Sobic009G227100--Sobic001G052100 Sobic004G334200 Sobic004G334200 Sobic009G227100--Sobic004G334200 Sobic009G227100--Sobic003G190200 Sobic009G227100--Sobic010G112600 Sobic001G478900--Sobic008G095900 Sobic001G478900--Sobic006G262800 Sobic001G478900--Sobic004G256900 Sobic003G184300 Sobic003G184300 Sobic001G478900--Sobic003G184300 Sobic001G478900--Sobic009G047700 Sobic004G051600 Sobic004G051600 Sobic001G478900--Sobic004G051600 Sobic001G478900--Sobic010G068900 Sobic009G253101 Sobic009G253101 Sobic001G478900--Sobic009G253101 Sobic010G123100 Sobic010G123100 Sobic001G478900--Sobic010G123100 Sobic008G095900--Sobic004G194400 Sobic001G308500 Sobic001G308500 Sobic008G095900--Sobic001G308500 Sobic008G095900--Sobic004G051600 Sobic008G095900--Sobic001G478900 Sobic008G085950 Sobic008G085950 Sobic008G095900--Sobic008G085950 Sobic006G191000 Sobic006G191000 Sobic008G095900--Sobic006G191000 Sobic008G095900--Sobic010G086300 Sobic006G071362 Sobic006G071362 Sobic008G095900--Sobic006G071362 Sobic003G004800 Sobic003G004800 Sobic008G095900--Sobic003G004800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.