Gene annotation
Transcriptome id Sobic.001G023600.1
Synonym Sb01g002250
Functional annotation YIF1B, putative, expressed
UniProt C5WTY9
Pfam PF03878
Panther DB PTHR14083 PTHR14083:SF4
NCBI CDD KOG3094; Predicted membrane protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G30890 : Integral membrane HRF1 family protein
RAP-DB (Rice) LOC_Os06g41590.1 : YIF1B, putative, expressed
MaizeGDB (Corn) Zm00025a034677
Brachypodium KQJ93815
Barley HORVU6Hr1G034030.2 , HORVU6Hr1G034030.3 , HORVU6Hr1G034030.1
Wheat TraesCS6B02G195300 , TraesCS6A02G167600 , TraesCS6D02G156600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G058200 pectate lyase family protein, expressed K01728: pectate lyase
2 Sobic.003G200000 respiratory burst oxidase, putative, expressed -
3 Sobic.001G327100 OsFBX157 - F-box domain containing protein, expressed -
4 Sobic.001G529500 PPR repeat domain containing protein, putative, expressed -
5 Sobic.005G045800 serine/threonine-protein kinase WNK4, putative, expressed K08867: WNK, WNK lysine deficient protein kinase
6 Sobic.002G108100 OsFBLD6 - F-box, LRR and FBD domain containing protein, expressed -
7 Sobic.001G348000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nodulation protein-related, putative, expressed -
8 Sobic.001G433600 - -
9 Sobic.003G167000 protein phosphotase protein, putative, expressed -
10 Sobic.006G167100 - -
11 Sobic.001G505600 DENN domain containing protein, expressed -
12 Sobic.008G132200 tetratricopeptide repeat domain containing protein, expressed -
13 Sobic.007G118050 - -
14 Sobic.001G347700 protein phosphotase protein, putative, expressed -
15 Sobic.001G203600 PPR repeat domain containing protein, putative, expressed -
16 Sobic.009G218000 VIP1 protein, putative, expressed -
17 Sobic.001G385000 nucleoside-triphosphatase, putative, expressed K14641: apyrase
18 Sobic.010G188900 PPR repeat domain containing protein, putative, expressed -
19 Sobic.007G189100 SFC, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
20 Sobic.009G201000 hydrolase, acting on carbon-nitrogen, putative, expressed -


Gene co-expression network
sample Sobic001G023600 Sobic001G023600 Sobic008G058200 Sobic008G058200 Sobic001G023600--Sobic008G058200 Sobic003G200000 Sobic003G200000 Sobic001G023600--Sobic003G200000 Sobic001G327100 Sobic001G327100 Sobic001G023600--Sobic001G327100 Sobic001G529500 Sobic001G529500 Sobic001G023600--Sobic001G529500 Sobic005G045800 Sobic005G045800 Sobic001G023600--Sobic005G045800 Sobic002G108100 Sobic002G108100 Sobic001G023600--Sobic002G108100 Sobic001G348000 Sobic001G348000 Sobic001G023600--Sobic001G348000 Sobic001G433600 Sobic001G433600 Sobic001G023600--Sobic001G433600 Sobic003G167000 Sobic003G167000 Sobic001G023600--Sobic003G167000 Sobic008G058200--Sobic001G023600 Sobic009G218000 Sobic009G218000 Sobic008G058200--Sobic009G218000 Sobic008G058200--Sobic003G200000 Sobic006G167100 Sobic006G167100 Sobic008G058200--Sobic006G167100 Sobic008G058200--Sobic005G045800 Sobic009G158000 Sobic009G158000 Sobic008G058200--Sobic009G158000 Sobic009G054400 Sobic009G054400 Sobic008G058200--Sobic009G054400 Sobic007G118050 Sobic007G118050 Sobic008G058200--Sobic007G118050 Sobic001G414100 Sobic001G414100 Sobic008G058200--Sobic001G414100 Sobic003G200000--Sobic005G045800 Sobic009G163100 Sobic009G163100 Sobic003G200000--Sobic009G163100 Sobic007G189100 Sobic007G189100 Sobic003G200000--Sobic007G189100 Sobic004G062600 Sobic004G062600 Sobic003G200000--Sobic004G062600 Sobic001G385300 Sobic001G385300 Sobic003G200000--Sobic001G385300 Sobic003G352900 Sobic003G352900 Sobic003G200000--Sobic003G352900 Sobic008G156600 Sobic008G156600 Sobic003G200000--Sobic008G156600 Sobic004G241300 Sobic004G241300 Sobic003G200000--Sobic004G241300 Sobic002G414800 Sobic002G414800 Sobic003G200000--Sobic002G414800 Sobic009G214500 Sobic009G214500 Sobic001G327100--Sobic009G214500 Sobic008G085950 Sobic008G085950 Sobic001G327100--Sobic008G085950 Sobic001G327100--Sobic003G200000 Sobic001G327100--Sobic001G385300 Sobic005G060100 Sobic005G060100 Sobic001G327100--Sobic005G060100 Sobic008G047500 Sobic008G047500 Sobic001G327100--Sobic008G047500 Sobic007G102300 Sobic007G102300 Sobic001G327100--Sobic007G102300 Sobic001G327100--Sobic004G062600 Sobic001G327100--Sobic005G045800 Sobic005G210500 Sobic005G210500 Sobic001G529500--Sobic005G210500 Sobic001G529500--Sobic001G327100 Sobic001G486600 Sobic001G486600 Sobic001G529500--Sobic001G486600 Sobic010G147500 Sobic010G147500 Sobic001G529500--Sobic010G147500 Sobic001G268300 Sobic001G268300 Sobic001G529500--Sobic001G268300 Sobic010G188900 Sobic010G188900 Sobic001G529500--Sobic010G188900 Sobic001G203600 Sobic001G203600 Sobic001G529500--Sobic001G203600 Sobic001G529500--Sobic001G023600 Sobic003G418400 Sobic003G418400 Sobic001G529500--Sobic003G418400 Sobic005G045800--Sobic003G352900 Sobic003G376900 Sobic003G376900 Sobic005G045800--Sobic003G376900 Sobic005G045800--Sobic001G385300 Sobic002G299500 Sobic002G299500 Sobic005G045800--Sobic002G299500 Sobic001G131900 Sobic001G131900 Sobic005G045800--Sobic001G131900 Sobic005G045800--Sobic003G200000 Sobic008G171900 Sobic008G171900 Sobic005G045800--Sobic008G171900 Sobic005G045800--Sobic009G163100 Sobic007G144100 Sobic007G144100 Sobic005G045800--Sobic007G144100 Sobic003G342500 Sobic003G342500 Sobic002G108100--Sobic003G342500 Sobic008G155400 Sobic008G155400 Sobic002G108100--Sobic008G155400 Sobic002G108100--Sobic005G045800 Sobic009G066200 Sobic009G066200 Sobic002G108100--Sobic009G066200 Sobic002G108100--Sobic003G200000 Sobic002G108100--Sobic003G352900 Sobic002G108100--Sobic007G189100 Sobic002G108100--Sobic007G118050 Sobic002G108100--Sobic001G131900 Sobic002G268700 Sobic002G268700 Sobic001G348000--Sobic002G268700 Sobic001G192700 Sobic001G192700 Sobic001G348000--Sobic001G192700 Sobic007G048700 Sobic007G048700 Sobic001G348000--Sobic007G048700 Sobic008G132200 Sobic008G132200 Sobic001G348000--Sobic008G132200 Sobic001G347700 Sobic001G347700 Sobic001G348000--Sobic001G347700 Sobic001G348000--Sobic005G210500 Sobic002G232400 Sobic002G232400 Sobic001G348000--Sobic002G232400 Sobic006G271000 Sobic006G271000 Sobic001G348000--Sobic006G271000 Sobic001G286100 Sobic001G286100 Sobic001G348000--Sobic001G286100 Sobic001G117900 Sobic001G117900 Sobic001G433600--Sobic001G117900 Sobic002G308000 Sobic002G308000 Sobic001G433600--Sobic002G308000 Sobic001G433600--Sobic005G060100 Sobic007G105700 Sobic007G105700 Sobic001G433600--Sobic007G105700 Sobic001G433600--Sobic009G054400 Sobic004G298600 Sobic004G298600 Sobic001G433600--Sobic004G298600 Sobic001G433600--Sobic007G189100 Sobic001G433600--Sobic001G131900 Sobic007G086600 Sobic007G086600 Sobic001G433600--Sobic007G086600 Sobic003G167000--Sobic007G048700 Sobic003G167000--Sobic001G347700 Sobic001G013200 Sobic001G013200 Sobic003G167000--Sobic001G013200 Sobic007G003100 Sobic007G003100 Sobic003G167000--Sobic007G003100 Sobic003G167000--Sobic009G218000 Sobic003G274200 Sobic003G274200 Sobic003G167000--Sobic003G274200 Sobic003G113400 Sobic003G113400 Sobic003G167000--Sobic003G113400 Sobic003G190600 Sobic003G190600 Sobic003G167000--Sobic003G190600 Sobic006G153200 Sobic006G153200 Sobic003G167000--Sobic006G153200
Octagon: transcription factors


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