Gene annotation
Transcriptome id Sobic.008G058200.3
Synonym Sb08g004905
Functional annotation pectate lyase family protein, expressed
UniProt A0A1B6PC94
Pfam PF00544
Panther DB PTHR31683 PTHR31683:SF23
NCBI CDD -
KEGG Orthology K01728; pectate lyase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G55140 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os01g36620.1 : pectate lyase family protein, expressed
MaizeGDB (Corn) Zm00025a019037
Brachypodium KQK10478 , PNT73153
Barley HORVU2Hr1G013210.1 , HORVU2Hr1G013210.3 , HORVU2Hr1G013210.2 , HORVU2Hr1G013210.5 , HORVU2Hr1G013210.4 , HORVU2Hr1G013210.6 , HORVU5Hr1G120170.1
Wheat TraesCS2A02G091500
Populus -


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cDNA sequences
Sobic.008G058200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G023600 YIF1B, putative, expressed -
2 Sobic.009G218000 VIP1 protein, putative, expressed -
3 Sobic.003G200000 respiratory burst oxidase, putative, expressed -
4 Sobic.006G167100 - -
5 Sobic.005G045800 serine/threonine-protein kinase WNK4, putative, expressed K08867: WNK, WNK lysine deficient protein kinase
6 Sobic.009G158000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@growth regulator related protein, putative, expressed -
7 Sobic.009G054400 ECT protein, putative, expressed -
8 Sobic.007G118050 - -
9 Sobic.001G414100 expressed protein -
10 Sobic.001G433600 - -
11 Sobic.003G167000 protein phosphotase protein, putative, expressed -
12 Sobic.002G322700 expressed protein -
13 Sobic.010G248000 EDR2, putative, expressed -
14 Sobic.003G040700 choline/ethanolamine kinase, putative, expressed K14156: choline/ethanolamine kinase
15 Sobic.010G253400 AIG2-like family domain containing protein, expressed -
16 Sobic.001G073700 tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
17 Sobic.004G186300 protein phosphotase protein, putative, expressed -
18 Sobic.002G108100 OsFBLD6 - F-box, LRR and FBD domain containing protein, expressed -
19 Sobic.001G309200 fatty acid hydroxylase, putative, expressed K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase
20 Sobic.002G106200 OsFBLD6 - F-box, LRR and FBD domain containing protein, expressed -


Gene co-expression network
sample Sobic008G058200 Sobic008G058200 Sobic001G023600 Sobic001G023600 Sobic008G058200--Sobic001G023600 Sobic009G218000 Sobic009G218000 Sobic008G058200--Sobic009G218000 Sobic003G200000 Sobic003G200000 Sobic008G058200--Sobic003G200000 Sobic006G167100 Sobic006G167100 Sobic008G058200--Sobic006G167100 Sobic005G045800 Sobic005G045800 Sobic008G058200--Sobic005G045800 Sobic009G158000 Sobic009G158000 Sobic008G058200--Sobic009G158000 Sobic009G054400 Sobic009G054400 Sobic008G058200--Sobic009G054400 Sobic007G118050 Sobic007G118050 Sobic008G058200--Sobic007G118050 Sobic001G414100 Sobic001G414100 Sobic008G058200--Sobic001G414100 Sobic001G023600--Sobic008G058200 Sobic001G023600--Sobic003G200000 Sobic001G327100 Sobic001G327100 Sobic001G023600--Sobic001G327100 Sobic001G529500 Sobic001G529500 Sobic001G023600--Sobic001G529500 Sobic001G023600--Sobic005G045800 Sobic002G108100 Sobic002G108100 Sobic001G023600--Sobic002G108100 Sobic001G348000 Sobic001G348000 Sobic001G023600--Sobic001G348000 Sobic001G433600 Sobic001G433600 Sobic001G023600--Sobic001G433600 Sobic003G167000 Sobic003G167000 Sobic001G023600--Sobic003G167000 Sobic006G153200 Sobic006G153200 Sobic009G218000--Sobic006G153200 Sobic001G309200 Sobic001G309200 Sobic009G218000--Sobic001G309200 Sobic009G218000--Sobic003G167000 Sobic002G217500 Sobic002G217500 Sobic009G218000--Sobic002G217500 Sobic002G422400 Sobic002G422400 Sobic009G218000--Sobic002G422400 Sobic001G352800 Sobic001G352800 Sobic009G218000--Sobic001G352800 Sobic001G485300 Sobic001G485300 Sobic009G218000--Sobic001G485300 Sobic001G155200 Sobic001G155200 Sobic009G218000--Sobic001G155200 Sobic008G011800 Sobic008G011800 Sobic009G218000--Sobic008G011800 Sobic003G200000--Sobic005G045800 Sobic009G163100 Sobic009G163100 Sobic003G200000--Sobic009G163100 Sobic007G189100 Sobic007G189100 Sobic003G200000--Sobic007G189100 Sobic004G062600 Sobic004G062600 Sobic003G200000--Sobic004G062600 Sobic001G385300 Sobic001G385300 Sobic003G200000--Sobic001G385300 Sobic003G352900 Sobic003G352900 Sobic003G200000--Sobic003G352900 Sobic008G156600 Sobic008G156600 Sobic003G200000--Sobic008G156600 Sobic004G241300 Sobic004G241300 Sobic003G200000--Sobic004G241300 Sobic002G414800 Sobic002G414800 Sobic003G200000--Sobic002G414800 Sobic006G167100--Sobic005G045800 Sobic006G167100--Sobic007G189100 Sobic006G167100--Sobic002G414800 Sobic001G131900 Sobic001G131900 Sobic006G167100--Sobic001G131900 Sobic002G392400 Sobic002G392400 Sobic006G167100--Sobic002G392400 Sobic006G167100--Sobic003G200000 Sobic006G167100--Sobic001G433600 Sobic002G308000 Sobic002G308000 Sobic006G167100--Sobic002G308000 Sobic006G116900 Sobic006G116900 Sobic006G167100--Sobic006G116900 Sobic005G045800--Sobic003G352900 Sobic003G376900 Sobic003G376900 Sobic005G045800--Sobic003G376900 Sobic005G045800--Sobic001G385300 Sobic002G299500 Sobic002G299500 Sobic005G045800--Sobic002G299500 Sobic005G045800--Sobic001G131900 Sobic005G045800--Sobic003G200000 Sobic008G171900 Sobic008G171900 Sobic005G045800--Sobic008G171900 Sobic005G045800--Sobic009G163100 Sobic007G144100 Sobic007G144100 Sobic005G045800--Sobic007G144100 Sobic006G115900 Sobic006G115900 Sobic009G158000--Sobic006G115900 Sobic002G120800 Sobic002G120800 Sobic009G158000--Sobic002G120800 Sobic009G147200 Sobic009G147200 Sobic009G158000--Sobic009G147200 Sobic009G158000--Sobic008G058200 Sobic003G072700 Sobic003G072700 Sobic009G158000--Sobic003G072700 Sobic002G106200 Sobic002G106200 Sobic009G158000--Sobic002G106200 Sobic010G263400 Sobic010G263400 Sobic009G158000--Sobic010G263400 Sobic007G060100 Sobic007G060100 Sobic009G158000--Sobic007G060100 Sobic007G146200 Sobic007G146200 Sobic009G158000--Sobic007G146200 Sobic009G054400--Sobic001G433600 Sobic010G009700 Sobic010G009700 Sobic009G054400--Sobic010G009700 Sobic007G105700 Sobic007G105700 Sobic009G054400--Sobic007G105700 Sobic009G054400--Sobic002G392400 Sobic002G241100 Sobic002G241100 Sobic009G054400--Sobic002G241100 Sobic002G239400 Sobic002G239400 Sobic009G054400--Sobic002G239400 Sobic005G060100 Sobic005G060100 Sobic009G054400--Sobic005G060100 Sobic008G047500 Sobic008G047500 Sobic009G054400--Sobic008G047500 Sobic009G054400--Sobic003G200000 Sobic007G118075 Sobic007G118075 Sobic007G118050--Sobic007G118075 Sobic007G118050--Sobic009G054400 Sobic007G118050--Sobic002G108100 Sobic007G118050--Sobic001G433600 Sobic004G353300 Sobic004G353300 Sobic007G118050--Sobic004G353300 Sobic003G285700 Sobic003G285700 Sobic007G118050--Sobic003G285700 Sobic005G123400 Sobic005G123400 Sobic007G118050--Sobic005G123400 Sobic003G091600 Sobic003G091600 Sobic007G118050--Sobic003G091600 Sobic007G118050--Sobic003G200000 Sobic003G392275 Sobic003G392275 Sobic001G414100--Sobic003G392275 Sobic003G342500 Sobic003G342500 Sobic001G414100--Sobic003G342500 Sobic004G098800 Sobic004G098800 Sobic001G414100--Sobic004G098800 Sobic002G102300 Sobic002G102300 Sobic001G414100--Sobic002G102300 Sobic006G219900 Sobic006G219900 Sobic001G414100--Sobic006G219900 Sobic003G141600 Sobic003G141600 Sobic001G414100--Sobic003G141600 Sobic003G117800 Sobic003G117800 Sobic001G414100--Sobic003G117800 Sobic003G435400 Sobic003G435400 Sobic001G414100--Sobic003G435400 Sobic001G414100--Sobic002G106200
Octagon: transcription factors


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