Gene annotation
Transcriptome id Sobic.002G153400.1
Synonym ATMND1, Sb02g018880
Functional annotation meiotic coiled-coil protein 7, putative, expressed
UniProt C5X865
Pfam PF03962
Panther DB PTHR31398 PTHR31398:SF0
NCBI CDD KOG3433; Protein involved in meiotic recombination/predicted coiled-coil protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G29170 : Mnd1 family protein
RAP-DB (Rice) LOC_Os09g10850.1 : meiotic coiled-coil protein 7, putative, expressed
MaizeGDB (Corn) Zm00025a013286
Brachypodium KQJ89674 , KQJ89672 , KQJ89673
Barley -
Wheat TraesCS5D02G178900 , TraesCS5B02G171700 , TraesCS5A02G174300
Populus -


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cDNA sequences
Sobic.002G153400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G117900 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
2 Sobic.001G352800 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
3 Sobic.001G485300 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
4 Sobic.001G192700 major facilitator superfamily domain-containing protein 5, putative, expressed -
5 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
6 Sobic.001G191900 mitochondrial carrier protein, putative, expressed K15109: SLC25A20_29, CACT, CACL, solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29
7 Sobic.006G271000 mis12 protein, expressed -
8 Sobic.005G060100 growth regulator related protein, putative, expressed -
9 Sobic.003G418400 expressed protein -
10 Sobic.005G210500 - K10901: BLM, RECQL3, bloom syndrome protein
11 Sobic.002G392400 expressed protein -
12 Sobic.002G348400 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
13 Sobic.004G062600 OsFBX154 - F-box domain containing protein, expressed -
14 Sobic.001G327100 OsFBX157 - F-box domain containing protein, expressed -
15 Sobic.001G091701 - -
16 Sobic.001G203600 PPR repeat domain containing protein, putative, expressed -
17 Sobic.010G002800 AGAP000326-PA, putative, expressed K18163: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6
18 Sobic.002G241100 glycosyl transferase 8 domain containing protein, putative, expressed -
19 Sobic.001G486600 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
20 Sobic.005G048600 expressed protein -


Gene co-expression network
sample Sobic002G153400 Sobic002G153400 Sobic001G117900 Sobic001G117900 Sobic002G153400--Sobic001G117900 Sobic001G352800 Sobic001G352800 Sobic002G153400--Sobic001G352800 Sobic001G485300 Sobic001G485300 Sobic002G153400--Sobic001G485300 Sobic001G192700 Sobic001G192700 Sobic002G153400--Sobic001G192700 Sobic002G308000 Sobic002G308000 Sobic002G153400--Sobic002G308000 Sobic001G191900 Sobic001G191900 Sobic002G153400--Sobic001G191900 Sobic006G271000 Sobic006G271000 Sobic002G153400--Sobic006G271000 Sobic005G060100 Sobic005G060100 Sobic002G153400--Sobic005G060100 Sobic003G418400 Sobic003G418400 Sobic002G153400--Sobic003G418400 Sobic001G117900--Sobic002G308000 Sobic001G433600 Sobic001G433600 Sobic001G117900--Sobic001G433600 Sobic002G392400 Sobic002G392400 Sobic001G117900--Sobic002G392400 Sobic007G086600 Sobic007G086600 Sobic001G117900--Sobic007G086600 Sobic001G117900--Sobic005G060100 Sobic007G105700 Sobic007G105700 Sobic001G117900--Sobic007G105700 Sobic002G348400 Sobic002G348400 Sobic001G117900--Sobic002G348400 Sobic009G025700 Sobic009G025700 Sobic001G117900--Sobic009G025700 Sobic003G004800 Sobic003G004800 Sobic001G117900--Sobic003G004800 Sobic001G219800 Sobic001G219800 Sobic001G352800--Sobic001G219800 Sobic002G232400 Sobic002G232400 Sobic001G352800--Sobic002G232400 Sobic002G255400 Sobic002G255400 Sobic001G352800--Sobic002G255400 Sobic003G260600 Sobic003G260600 Sobic001G352800--Sobic003G260600 Sobic003G075200 Sobic003G075200 Sobic001G352800--Sobic003G075200 Sobic003G085500 Sobic003G085500 Sobic001G352800--Sobic003G085500 Sobic002G090500 Sobic002G090500 Sobic001G352800--Sobic002G090500 Sobic001G352800--Sobic001G192700 Sobic001G126800 Sobic001G126800 Sobic001G352800--Sobic001G126800 Sobic001G485300--Sobic002G348400 Sobic001G485300--Sobic003G085500 Sobic002G276800 Sobic002G276800 Sobic001G485300--Sobic002G276800 Sobic006G041800 Sobic006G041800 Sobic001G485300--Sobic006G041800 Sobic003G190600 Sobic003G190600 Sobic001G485300--Sobic003G190600 Sobic001G485300--Sobic002G392400 Sobic004G054700 Sobic004G054700 Sobic001G485300--Sobic004G054700 Sobic001G347700 Sobic001G347700 Sobic001G485300--Sobic001G347700 Sobic001G485300--Sobic001G352800 Sobic001G192700--Sobic001G219800 Sobic003G016300 Sobic003G016300 Sobic001G192700--Sobic003G016300 Sobic001G192700--Sobic001G352800 Sobic001G192700--Sobic002G232400 Sobic001G135200 Sobic001G135200 Sobic001G192700--Sobic001G135200 Sobic001G348000 Sobic001G348000 Sobic001G192700--Sobic001G348000 Sobic004G117400 Sobic004G117400 Sobic001G192700--Sobic004G117400 Sobic001G091701 Sobic001G091701 Sobic001G192700--Sobic001G091701 Sobic002G387800 Sobic002G387800 Sobic001G192700--Sobic002G387800 Sobic002G308000--Sobic002G392400 Sobic002G308000--Sobic007G105700 Sobic002G308000--Sobic001G117900 Sobic002G308000--Sobic001G433600 Sobic003G293400 Sobic003G293400 Sobic002G308000--Sobic003G293400 Sobic010G253200 Sobic010G253200 Sobic002G308000--Sobic010G253200 Sobic001G131900 Sobic001G131900 Sobic002G308000--Sobic001G131900 Sobic007G111300 Sobic007G111300 Sobic002G308000--Sobic007G111300 Sobic002G192900 Sobic002G192900 Sobic002G308000--Sobic002G192900 Sobic006G106600 Sobic006G106600 Sobic001G191900--Sobic006G106600 Sobic001G229300 Sobic001G229300 Sobic001G191900--Sobic001G229300 Sobic004G277400 Sobic004G277400 Sobic001G191900--Sobic004G277400 Sobic001G191900--Sobic002G153400 Sobic007G022700 Sobic007G022700 Sobic001G191900--Sobic007G022700 Sobic007G051400 Sobic007G051400 Sobic001G191900--Sobic007G051400 Sobic009G120400 Sobic009G120400 Sobic001G191900--Sobic009G120400 Sobic004G354100 Sobic004G354100 Sobic001G191900--Sobic004G354100 Sobic002G426100 Sobic002G426100 Sobic001G191900--Sobic002G426100 Sobic006G271000--Sobic001G352800 Sobic006G271000--Sobic002G153400 Sobic009G220000 Sobic009G220000 Sobic006G271000--Sobic009G220000 Sobic006G271000--Sobic001G135200 Sobic006G271000--Sobic001G192700 Sobic001G286100 Sobic001G286100 Sobic006G271000--Sobic001G286100 Sobic010G002800 Sobic010G002800 Sobic006G271000--Sobic010G002800 Sobic006G271000--Sobic001G348000 Sobic005G210500 Sobic005G210500 Sobic006G271000--Sobic005G210500 Sobic005G060100--Sobic007G105700 Sobic007G102300 Sobic007G102300 Sobic005G060100--Sobic007G102300 Sobic001G385300 Sobic001G385300 Sobic005G060100--Sobic001G385300 Sobic003G216600 Sobic003G216600 Sobic005G060100--Sobic003G216600 Sobic005G060100--Sobic001G433600 Sobic004G298600 Sobic004G298600 Sobic005G060100--Sobic004G298600 Sobic005G060100--Sobic001G117900 Sobic003G352900 Sobic003G352900 Sobic005G060100--Sobic003G352900 Sobic005G060100--Sobic001G131900 Sobic003G418400--Sobic005G210500 Sobic003G418400--Sobic001G117900 Sobic009G214500 Sobic009G214500 Sobic003G418400--Sobic009G214500 Sobic004G215200 Sobic004G215200 Sobic003G418400--Sobic004G215200 Sobic006G208200 Sobic006G208200 Sobic003G418400--Sobic006G208200 Sobic003G418400--Sobic001G433600 Sobic002G309100 Sobic002G309100 Sobic003G418400--Sobic002G309100 Sobic010G009700 Sobic010G009700 Sobic003G418400--Sobic010G009700 Sobic001G327100 Sobic001G327100 Sobic003G418400--Sobic001G327100
Octagon: transcription factors


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