Gene annotation
Transcriptome id Sobic.001G485300.1
Synonym Sb01g045430
Functional annotation transcription initiation factor IIE subunit beta, putative, expressed
UniProt A0A1B6QQ62
Pfam PF02186
Panther DB PTHR12716 PTHR12716:SF8
NCBI CDD KOG3095; Transcription initiation factor IIE, beta subunit
KEGG Orthology K03137; TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
Gene Ontology GO:0006367; transcription initiation from RNA polymerase II promoter


Orthologs (automatic annotation)
TAIR AT4G20330 : Transcription initiation factor TFIIE, beta subunit
RAP-DB (Rice) LOC_Os10g25770.2 : transcription initiation factor IIE subunit beta, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G485300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G348400 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
2 Sobic.003G085500 signal peptidase complex subunit 3, putative, expressed K12948: SPCS3, signal peptidase complex subunit 3
3 Sobic.002G276800 ER lumen protein retaining receptor, putative, expressed -
4 Sobic.006G041800 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
5 Sobic.003G190600 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
6 Sobic.002G392400 expressed protein -
7 Sobic.004G054700 expressed protein K10745: ribonuclease H2 subunit C
8 Sobic.001G347700 protein phosphotase protein, putative, expressed -
9 Sobic.001G352800 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
10 Sobic.001G188000 SAM-dependent methyltransferase, putative, expressed -
11 Sobic.004G021000 cyclin-dependent kinase A-2, putative, expressed K02206: cyclin-dependent kinase 2
12 Sobic.002G153400 meiotic coiled-coil protein 7, putative, expressed -
13 Sobic.007G148400 cyclin-dependent kinase C-3, putative, expressed K08819: cyclin-dependent kinase 12/13
14 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
15 Sobic.009G218000 VIP1 protein, putative, expressed -
16 Sobic.010G069500 zinc ion binding protein, putative, expressed -
17 Sobic.010G153400 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
18 Sobic.003G167000 protein phosphotase protein, putative, expressed -
19 Sobic.001G117900 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
20 Sobic.001G280500 abscisic acid insensitive 8, putative, expressed -


Gene co-expression network
sample Sobic001G485300 Sobic001G485300 Sobic002G348400 Sobic002G348400 Sobic001G485300--Sobic002G348400 Sobic003G085500 Sobic003G085500 Sobic001G485300--Sobic003G085500 Sobic002G276800 Sobic002G276800 Sobic001G485300--Sobic002G276800 Sobic006G041800 Sobic006G041800 Sobic001G485300--Sobic006G041800 Sobic003G190600 Sobic003G190600 Sobic001G485300--Sobic003G190600 Sobic002G392400 Sobic002G392400 Sobic001G485300--Sobic002G392400 Sobic004G054700 Sobic004G054700 Sobic001G485300--Sobic004G054700 Sobic001G347700 Sobic001G347700 Sobic001G485300--Sobic001G347700 Sobic001G352800 Sobic001G352800 Sobic001G485300--Sobic001G352800 Sobic010G153400 Sobic010G153400 Sobic002G348400--Sobic010G153400 Sobic002G348400--Sobic002G392400 Sobic007G086600 Sobic007G086600 Sobic002G348400--Sobic007G086600 Sobic001G117900 Sobic001G117900 Sobic002G348400--Sobic001G117900 Sobic001G305900 Sobic001G305900 Sobic002G348400--Sobic001G305900 Sobic001G309200 Sobic001G309200 Sobic002G348400--Sobic001G309200 Sobic001G280500 Sobic001G280500 Sobic002G348400--Sobic001G280500 Sobic003G004800 Sobic003G004800 Sobic002G348400--Sobic003G004800 Sobic001G188000 Sobic001G188000 Sobic002G348400--Sobic001G188000 Sobic003G085500--Sobic001G485300 Sobic003G085500--Sobic001G352800 Sobic010G002800 Sobic010G002800 Sobic003G085500--Sobic010G002800 Sobic004G354100 Sobic004G354100 Sobic003G085500--Sobic004G354100 Sobic007G022700 Sobic007G022700 Sobic003G085500--Sobic007G022700 Sobic003G085500--Sobic002G392400 Sobic003G085500--Sobic002G276800 Sobic003G388700 Sobic003G388700 Sobic003G085500--Sobic003G388700 Sobic004G186100 Sobic004G186100 Sobic003G085500--Sobic004G186100 Sobic002G276800--Sobic001G485300 Sobic001G008100 Sobic001G008100 Sobic002G276800--Sobic001G008100 Sobic007G148400 Sobic007G148400 Sobic002G276800--Sobic007G148400 Sobic002G276800--Sobic006G041800 Sobic002G276800--Sobic003G190600 Sobic003G058500 Sobic003G058500 Sobic002G276800--Sobic003G058500 Sobic001G061200 Sobic001G061200 Sobic002G276800--Sobic001G061200 Sobic001G193100 Sobic001G193100 Sobic002G276800--Sobic001G193100 Sobic002G401700 Sobic002G401700 Sobic002G276800--Sobic002G401700 Sobic007G119600 Sobic007G119600 Sobic006G041800--Sobic007G119600 Sobic006G041800--Sobic001G008100 Sobic003G276100 Sobic003G276100 Sobic006G041800--Sobic003G276100 Sobic006G041800--Sobic001G485300 Sobic006G041800--Sobic002G276800 Sobic007G012900 Sobic007G012900 Sobic006G041800--Sobic007G012900 Sobic006G041800--Sobic003G388700 Sobic001G387800 Sobic001G387800 Sobic006G041800--Sobic001G387800 Sobic002G255400 Sobic002G255400 Sobic006G041800--Sobic002G255400 Sobic002G395500 Sobic002G395500 Sobic003G190600--Sobic002G395500 Sobic001G389200 Sobic001G389200 Sobic003G190600--Sobic001G389200 Sobic002G023100 Sobic002G023100 Sobic003G190600--Sobic002G023100 Sobic001G378200 Sobic001G378200 Sobic003G190600--Sobic001G378200 Sobic003G190600--Sobic001G485300 Sobic007G118500 Sobic007G118500 Sobic003G190600--Sobic007G118500 Sobic006G012700 Sobic006G012700 Sobic003G190600--Sobic006G012700 Sobic004G060300 Sobic004G060300 Sobic003G190600--Sobic004G060300 Sobic001G047600 Sobic001G047600 Sobic003G190600--Sobic001G047600 Sobic007G105700 Sobic007G105700 Sobic002G392400--Sobic007G105700 Sobic002G308000 Sobic002G308000 Sobic002G392400--Sobic002G308000 Sobic002G392400--Sobic001G117900 Sobic002G392400--Sobic002G348400 Sobic002G313100 Sobic002G313100 Sobic002G392400--Sobic002G313100 Sobic003G293400 Sobic003G293400 Sobic002G392400--Sobic003G293400 Sobic001G131900 Sobic001G131900 Sobic002G392400--Sobic001G131900 Sobic006G232800 Sobic006G232800 Sobic002G392400--Sobic006G232800 Sobic002G392400--Sobic010G153400 Sobic004G054700--Sobic001G485300 Sobic004G054700--Sobic001G008100 Sobic009G209900 Sobic009G209900 Sobic004G054700--Sobic009G209900 Sobic004G054700--Sobic006G041800 Sobic004G054700--Sobic002G276800 Sobic004G054700--Sobic003G085500 Sobic003G395300 Sobic003G395300 Sobic004G054700--Sobic003G395300 Sobic001G050400 Sobic001G050400 Sobic004G054700--Sobic001G050400 Sobic004G054700--Sobic001G061200 Sobic007G048700 Sobic007G048700 Sobic001G347700--Sobic007G048700 Sobic003G167000 Sobic003G167000 Sobic001G347700--Sobic003G167000 Sobic001G347700--Sobic001G352800 Sobic001G347700--Sobic001G485300 Sobic003G260600 Sobic003G260600 Sobic001G347700--Sobic003G260600 Sobic010G028400 Sobic010G028400 Sobic001G347700--Sobic010G028400 Sobic002G352200 Sobic002G352200 Sobic001G347700--Sobic002G352200 Sobic002G217500 Sobic002G217500 Sobic001G347700--Sobic002G217500 Sobic004G040700 Sobic004G040700 Sobic001G347700--Sobic004G040700 Sobic001G219800 Sobic001G219800 Sobic001G352800--Sobic001G219800 Sobic002G232400 Sobic002G232400 Sobic001G352800--Sobic002G232400 Sobic001G352800--Sobic002G255400 Sobic001G352800--Sobic003G260600 Sobic003G075200 Sobic003G075200 Sobic001G352800--Sobic003G075200 Sobic001G352800--Sobic003G085500 Sobic002G090500 Sobic002G090500 Sobic001G352800--Sobic002G090500 Sobic001G192700 Sobic001G192700 Sobic001G352800--Sobic001G192700 Sobic001G126800 Sobic001G126800 Sobic001G352800--Sobic001G126800
Octagon: transcription factors


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