Gene annotation
Transcriptome id Sobic.004G021000.1
Synonym CDKA, CDK2, 1, CDKA1, CDC2A, CDC2AAT, Sb04g001920, CDC2
Functional annotation cyclin-dependent kinase A-2, putative, expressed
UniProt C5XT32 , D8L802
Pfam PF00069
Panther DB PTHR24056 PTHR24056:SF230
NCBI CDD KOG0594; Protein kinase PCTAIRE and related kinases
KEGG Orthology K02206; cyclin-dependent kinase 2
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT3G48750 : cell division control 2
RAP-DB (Rice) LOC_Os02g03060.1 : cyclin-dependent kinase A-2, putative, expressed
MaizeGDB (Corn) Zm00025a000249 , Zm00025a034943 , Zm00025a053521
Brachypodium KQK23970 , KQJ93025 , KQJ93026
Barley HORVU4Hr1G085830.1 , HORVU6Hr1G013680.8 , HORVU6Hr1G013680.2 , HORVU6Hr1G013680.3 , HORVU6Hr1G013680.1 , HORVU6Hr1G013680.6 , HORVU6Hr1G013680.7 , HORVU6Hr1G013680.4 , HORVU6Hr1G013680.5 , HORVU4Hr1G085830.8 , HORVU4Hr1G085830.3 , HORVU4Hr1G085830.4 , HORVU4Hr1G085830.7 , HORVU4Hr1G085830.2 , HORVU4Hr1G085830.5 , HORVU4Hr1G085830.6
Wheat TraesCS6A02G078200 , TraesCS6B02G105100 , TraesCS4B02G353600 , TraesCS4B02G353600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G485300 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
2 Sobic.002G276800 ER lumen protein retaining receptor, putative, expressed -
3 Sobic.004G017900 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
4 Sobic.003G085500 signal peptidase complex subunit 3, putative, expressed K12948: SPCS3, signal peptidase complex subunit 3
5 Sobic.004G054700 expressed protein K10745: ribonuclease H2 subunit C
6 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
7 Sobic.003G235100 HD domain containing protein 2, putative, expressed K07023: putative hydrolases of HD superfamily
8 Sobic.006G119900 zinc finger, ZZ type family protein, expressed K17987: next to BRCA1 gene 1 protein
9 Sobic.007G118500 galactosyltransferase family protein, putative, expressed -
10 Sobic.002G392400 expressed protein -
11 Sobic.002G348400 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
12 Sobic.008G143100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.008G171400 phosphonate metabolism protein-related, putative, expressed -
14 Sobic.001G352800 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
15 Sobic.002G153400 meiotic coiled-coil protein 7, putative, expressed -
16 Sobic.007G105700 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
17 Sobic.009G260700 rho GDP-dissociation inhibitor 1, putative, expressed K12462: ARHGDI, Rho GDP-dissociation inhibitor
18 Sobic.004G284800 protein kinase, putative, expressed K08867: WNK, WNK lysine deficient protein kinase
19 Sobic.007G030100 galactosyltransferase family protein, putative, expressed -
20 Sobic.003G190600 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1


Gene co-expression network
sample Sobic004G021000 Sobic004G021000 Sobic001G485300 Sobic001G485300 Sobic004G021000--Sobic001G485300 Sobic002G276800 Sobic002G276800 Sobic004G021000--Sobic002G276800 Sobic004G017900 Sobic004G017900 Sobic004G021000--Sobic004G017900 Sobic003G085500 Sobic003G085500 Sobic004G021000--Sobic003G085500 Sobic004G054700 Sobic004G054700 Sobic004G021000--Sobic004G054700 Sobic003G260600 Sobic003G260600 Sobic004G021000--Sobic003G260600 Sobic003G235100 Sobic003G235100 Sobic004G021000--Sobic003G235100 Sobic006G119900 Sobic006G119900 Sobic004G021000--Sobic006G119900 Sobic007G118500 Sobic007G118500 Sobic004G021000--Sobic007G118500 Sobic002G348400 Sobic002G348400 Sobic001G485300--Sobic002G348400 Sobic001G485300--Sobic003G085500 Sobic001G485300--Sobic002G276800 Sobic006G041800 Sobic006G041800 Sobic001G485300--Sobic006G041800 Sobic003G190600 Sobic003G190600 Sobic001G485300--Sobic003G190600 Sobic002G392400 Sobic002G392400 Sobic001G485300--Sobic002G392400 Sobic001G485300--Sobic004G054700 Sobic001G347700 Sobic001G347700 Sobic001G485300--Sobic001G347700 Sobic001G352800 Sobic001G352800 Sobic001G485300--Sobic001G352800 Sobic002G276800--Sobic001G485300 Sobic001G008100 Sobic001G008100 Sobic002G276800--Sobic001G008100 Sobic007G148400 Sobic007G148400 Sobic002G276800--Sobic007G148400 Sobic002G276800--Sobic006G041800 Sobic002G276800--Sobic003G190600 Sobic003G058500 Sobic003G058500 Sobic002G276800--Sobic003G058500 Sobic001G061200 Sobic001G061200 Sobic002G276800--Sobic001G061200 Sobic001G193100 Sobic001G193100 Sobic002G276800--Sobic001G193100 Sobic002G401700 Sobic002G401700 Sobic002G276800--Sobic002G401700 Sobic004G017900--Sobic003G260600 Sobic001G543400 Sobic001G543400 Sobic004G017900--Sobic001G543400 Sobic004G017900--Sobic002G392400 Sobic007G189100 Sobic007G189100 Sobic004G017900--Sobic007G189100 Sobic008G132200 Sobic008G132200 Sobic004G017900--Sobic008G132200 Sobic007G014700 Sobic007G014700 Sobic004G017900--Sobic007G014700 Sobic003G200000 Sobic003G200000 Sobic004G017900--Sobic003G200000 Sobic002G070300 Sobic002G070300 Sobic004G017900--Sobic002G070300 Sobic007G043700 Sobic007G043700 Sobic004G017900--Sobic007G043700 Sobic003G085500--Sobic001G485300 Sobic003G085500--Sobic001G352800 Sobic010G002800 Sobic010G002800 Sobic003G085500--Sobic010G002800 Sobic004G354100 Sobic004G354100 Sobic003G085500--Sobic004G354100 Sobic007G022700 Sobic007G022700 Sobic003G085500--Sobic007G022700 Sobic003G085500--Sobic002G392400 Sobic003G085500--Sobic002G276800 Sobic003G388700 Sobic003G388700 Sobic003G085500--Sobic003G388700 Sobic004G186100 Sobic004G186100 Sobic003G085500--Sobic004G186100 Sobic004G054700--Sobic001G485300 Sobic004G054700--Sobic001G008100 Sobic009G209900 Sobic009G209900 Sobic004G054700--Sobic009G209900 Sobic004G054700--Sobic006G041800 Sobic004G054700--Sobic002G276800 Sobic004G054700--Sobic003G085500 Sobic003G395300 Sobic003G395300 Sobic004G054700--Sobic003G395300 Sobic001G050400 Sobic001G050400 Sobic004G054700--Sobic001G050400 Sobic004G054700--Sobic001G061200 Sobic002G255400 Sobic002G255400 Sobic003G260600--Sobic002G255400 Sobic003G201500 Sobic003G201500 Sobic003G260600--Sobic003G201500 Sobic003G089100 Sobic003G089100 Sobic003G260600--Sobic003G089100 Sobic003G260600--Sobic008G132200 Sobic001G378800 Sobic001G378800 Sobic003G260600--Sobic001G378800 Sobic003G372200 Sobic003G372200 Sobic003G260600--Sobic003G372200 Sobic002G420600 Sobic002G420600 Sobic003G260600--Sobic002G420600 Sobic008G072500 Sobic008G072500 Sobic003G260600--Sobic008G072500 Sobic003G260600--Sobic007G014700 Sobic009G046900 Sobic009G046900 Sobic003G235100--Sobic009G046900 Sobic007G004300 Sobic007G004300 Sobic003G235100--Sobic007G004300 Sobic009G116900 Sobic009G116900 Sobic003G235100--Sobic009G116900 Sobic002G084800 Sobic002G084800 Sobic003G235100--Sobic002G084800 Sobic005G145201 Sobic005G145201 Sobic003G235100--Sobic005G145201 Sobic008G152700 Sobic008G152700 Sobic003G235100--Sobic008G152700 Sobic003G402800 Sobic003G402800 Sobic003G235100--Sobic003G402800 Sobic004G350700 Sobic004G350700 Sobic003G235100--Sobic004G350700 Sobic004G107100 Sobic004G107100 Sobic003G235100--Sobic004G107100 Sobic007G105700 Sobic007G105700 Sobic006G119900--Sobic007G105700 Sobic001G076600 Sobic001G076600 Sobic006G119900--Sobic001G076600 Sobic006G189000 Sobic006G189000 Sobic006G119900--Sobic006G189000 Sobic005G060100 Sobic005G060100 Sobic006G119900--Sobic005G060100 Sobic001G385300 Sobic001G385300 Sobic006G119900--Sobic001G385300 Sobic010G274800 Sobic010G274800 Sobic006G119900--Sobic010G274800 Sobic008G085950 Sobic008G085950 Sobic006G119900--Sobic008G085950 Sobic003G004800 Sobic003G004800 Sobic006G119900--Sobic003G004800 Sobic006G156400 Sobic006G156400 Sobic006G119900--Sobic006G156400 Sobic003G394500 Sobic003G394500 Sobic007G118500--Sobic003G394500 Sobic004G060300 Sobic004G060300 Sobic007G118500--Sobic004G060300 Sobic007G118500--Sobic002G070300 Sobic010G133400 Sobic010G133400 Sobic007G118500--Sobic010G133400 Sobic007G118500--Sobic001G378800 Sobic006G232800 Sobic006G232800 Sobic007G118500--Sobic006G232800 Sobic001G455000 Sobic001G455000 Sobic007G118500--Sobic001G455000 Sobic001G356100 Sobic001G356100 Sobic007G118500--Sobic001G356100 Sobic008G171400 Sobic008G171400 Sobic007G118500--Sobic008G171400
Octagon: transcription factors


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