Gene annotation
Transcriptome id Sobic.002G276800.1
Synonym Sb02g031010
Functional annotation ER lumen protein retaining receptor, putative, expressed
UniProt C5X693
Pfam PF00810
Panther DB PTHR10585 PTHR10585:SF35
NCBI CDD KOG3106; ER lumen protein retaining receptor
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0006621protein retention in ER lumen


Orthologs (automatic annotation)
TAIR AT1G75760 : ER lumen protein retaining receptor family protein
RAP-DB (Rice) LOC_Os08g43470.1 : ER lumen protein retaining receptor, putative, expressed
MaizeGDB (Corn) Zm00025a047809 , Zm00025a014448 , Zm00025a005700 , Zm00025a034207
Brachypodium KQJ91211 , KQJ99297
Barley HORVU5Hr1G082570.1 , HORVU5Hr1G082570.3 , HORVU5Hr1G082570.2 , HORVU5Hr1G082570.4 , HORVU7Hr1G057300.2 , HORVU7Hr1G057300.1
Wheat TraesCS5A02G323400 , TraesCS7B02G170600 , TraesCS7D02G271700 , TraesCS7B02G170600 , TraesCS7B02G170600 , TraesCS7A02G271400 , TraesCS7A02G271400 , TraesCS7A02G271400 , TraesCS5B02G323900 , TraesCS5D02G330400
Populus -


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cDNA sequences
Sobic.002G276800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G485300 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
2 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
3 Sobic.007G148400 cyclin-dependent kinase C-3, putative, expressed K08819: cyclin-dependent kinase 12/13
4 Sobic.006G041800 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
5 Sobic.003G190600 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
6 Sobic.003G058500 expressed protein -
7 Sobic.001G061200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
8 Sobic.001G193100 expressed protein -
9 Sobic.002G401700 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
10 Sobic.004G344700 expressed protein -
11 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
12 Sobic.003G120700 glycosyl transferase, group 1 domain containing protein, expressed -
13 Sobic.003G167000 protein phosphotase protein, putative, expressed -
14 Sobic.010G250000 60S ribosomal protein L8, putative, expressed -
15 Sobic.007G218600 phosphoribosyl transferase, putative, expressed K00761: upp, uracil phosphoribosyltransferase
16 Sobic.001G378200 tetratricopeptide repeat domain containing protein, expressed -
17 Sobic.007G153500 metal cation transporter, putative, expressed K14713: SLC39A7, KE4, solute carrier family 39 (zinc transporter), member 7
18 Sobic.003G085500 signal peptidase complex subunit 3, putative, expressed K12948: SPCS3, signal peptidase complex subunit 3
19 Sobic.010G181600 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein
20 Sobic.001G358500 GA20734-PA, putative, expressed -


Gene co-expression network
sample Sobic002G276800 Sobic002G276800 Sobic001G485300 Sobic001G485300 Sobic002G276800--Sobic001G485300 Sobic001G008100 Sobic001G008100 Sobic002G276800--Sobic001G008100 Sobic007G148400 Sobic007G148400 Sobic002G276800--Sobic007G148400 Sobic006G041800 Sobic006G041800 Sobic002G276800--Sobic006G041800 Sobic003G190600 Sobic003G190600 Sobic002G276800--Sobic003G190600 Sobic003G058500 Sobic003G058500 Sobic002G276800--Sobic003G058500 Sobic001G061200 Sobic001G061200 Sobic002G276800--Sobic001G061200 Sobic001G193100 Sobic001G193100 Sobic002G276800--Sobic001G193100 Sobic002G401700 Sobic002G401700 Sobic002G276800--Sobic002G401700 Sobic002G348400 Sobic002G348400 Sobic001G485300--Sobic002G348400 Sobic003G085500 Sobic003G085500 Sobic001G485300--Sobic003G085500 Sobic001G485300--Sobic002G276800 Sobic001G485300--Sobic006G041800 Sobic001G485300--Sobic003G190600 Sobic002G392400 Sobic002G392400 Sobic001G485300--Sobic002G392400 Sobic004G054700 Sobic004G054700 Sobic001G485300--Sobic004G054700 Sobic001G347700 Sobic001G347700 Sobic001G485300--Sobic001G347700 Sobic001G352800 Sobic001G352800 Sobic001G485300--Sobic001G352800 Sobic004G039400 Sobic004G039400 Sobic001G008100--Sobic004G039400 Sobic001G008100--Sobic006G041800 Sobic001G465400 Sobic001G465400 Sobic001G008100--Sobic001G465400 Sobic010G040900 Sobic010G040900 Sobic001G008100--Sobic010G040900 Sobic001G387800 Sobic001G387800 Sobic001G008100--Sobic001G387800 Sobic003G276100 Sobic003G276100 Sobic001G008100--Sobic003G276100 Sobic002G079700 Sobic002G079700 Sobic001G008100--Sobic002G079700 Sobic009G191400 Sobic009G191400 Sobic001G008100--Sobic009G191400 Sobic001G008100--Sobic002G276800 Sobic007G218600 Sobic007G218600 Sobic007G148400--Sobic007G218600 Sobic003G308300 Sobic003G308300 Sobic007G148400--Sobic003G308300 Sobic006G222500 Sobic006G222500 Sobic007G148400--Sobic006G222500 Sobic009G186700 Sobic009G186700 Sobic007G148400--Sobic009G186700 Sobic001G050500 Sobic001G050500 Sobic007G148400--Sobic001G050500 Sobic007G146600 Sobic007G146600 Sobic007G148400--Sobic007G146600 Sobic003G255700 Sobic003G255700 Sobic007G148400--Sobic003G255700 Sobic001G305900 Sobic001G305900 Sobic007G148400--Sobic001G305900 Sobic007G148400--Sobic002G276800 Sobic007G119600 Sobic007G119600 Sobic006G041800--Sobic007G119600 Sobic006G041800--Sobic001G008100 Sobic006G041800--Sobic003G276100 Sobic006G041800--Sobic001G485300 Sobic006G041800--Sobic002G276800 Sobic007G012900 Sobic007G012900 Sobic006G041800--Sobic007G012900 Sobic003G388700 Sobic003G388700 Sobic006G041800--Sobic003G388700 Sobic006G041800--Sobic001G387800 Sobic002G255400 Sobic002G255400 Sobic006G041800--Sobic002G255400 Sobic002G395500 Sobic002G395500 Sobic003G190600--Sobic002G395500 Sobic001G389200 Sobic001G389200 Sobic003G190600--Sobic001G389200 Sobic002G023100 Sobic002G023100 Sobic003G190600--Sobic002G023100 Sobic001G378200 Sobic001G378200 Sobic003G190600--Sobic001G378200 Sobic003G190600--Sobic001G485300 Sobic007G118500 Sobic007G118500 Sobic003G190600--Sobic007G118500 Sobic006G012700 Sobic006G012700 Sobic003G190600--Sobic006G012700 Sobic004G060300 Sobic004G060300 Sobic003G190600--Sobic004G060300 Sobic001G047600 Sobic001G047600 Sobic003G190600--Sobic001G047600 Sobic001G424800 Sobic001G424800 Sobic003G058500--Sobic001G424800 Sobic010G181600 Sobic010G181600 Sobic003G058500--Sobic010G181600 Sobic007G172700 Sobic007G172700 Sobic003G058500--Sobic007G172700 Sobic003G058500--Sobic001G047600 Sobic004G350700 Sobic004G350700 Sobic003G058500--Sobic004G350700 Sobic002G355800 Sobic002G355800 Sobic003G058500--Sobic002G355800 Sobic001G378800 Sobic001G378800 Sobic003G058500--Sobic001G378800 Sobic008G152700 Sobic008G152700 Sobic003G058500--Sobic008G152700 Sobic003G117800 Sobic003G117800 Sobic003G058500--Sobic003G117800 Sobic001G061200--Sobic001G193100 Sobic007G173700 Sobic007G173700 Sobic001G061200--Sobic007G173700 Sobic003G222700 Sobic003G222700 Sobic001G061200--Sobic003G222700 Sobic009G207200 Sobic009G207200 Sobic001G061200--Sobic009G207200 Sobic008G129600 Sobic008G129600 Sobic001G061200--Sobic008G129600 Sobic001G061200--Sobic002G276800 Sobic002G029300 Sobic002G029300 Sobic001G061200--Sobic002G029300 Sobic003G148900 Sobic003G148900 Sobic001G061200--Sobic003G148900 Sobic001G023100 Sobic001G023100 Sobic001G061200--Sobic001G023100 Sobic010G223400 Sobic010G223400 Sobic001G193100--Sobic010G223400 Sobic003G394200 Sobic003G394200 Sobic001G193100--Sobic003G394200 Sobic001G012900 Sobic001G012900 Sobic001G193100--Sobic001G012900 Sobic001G193100--Sobic001G061200 Sobic001G193100--Sobic007G173700 Sobic004G084500 Sobic004G084500 Sobic001G193100--Sobic004G084500 Sobic001G193100--Sobic004G060300 Sobic004G078700 Sobic004G078700 Sobic001G193100--Sobic004G078700 Sobic010G074900 Sobic010G074900 Sobic001G193100--Sobic010G074900 Sobic010G007400 Sobic010G007400 Sobic002G401700--Sobic010G007400 Sobic002G401700--Sobic007G012900 Sobic004G159000 Sobic004G159000 Sobic002G401700--Sobic004G159000 Sobic007G117800 Sobic007G117800 Sobic002G401700--Sobic007G117800 Sobic001G050400 Sobic001G050400 Sobic002G401700--Sobic001G050400 Sobic003G116600 Sobic003G116600 Sobic002G401700--Sobic003G116600 Sobic008G108500 Sobic008G108500 Sobic002G401700--Sobic008G108500 Sobic002G401700--Sobic002G276800 Sobic002G401700--Sobic001G378200
Octagon: transcription factors


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