Gene annotation
Transcriptome id Sobic.002G401700.1
Synonym Sb02g041660
Functional annotation TRAF-type zinc finger domain-containing protein 1, putative, expressed
UniProt C5X461
Pfam -
Panther DB PTHR16295 PTHR16295:SF18
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09920 : TRAF-type zinc finger-related
RAP-DB (Rice) LOC_Os07g46390.1 : TRAF-type zinc finger domain-containing protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a015344
Brachypodium -
Barley HORVU2Hr1G023210.3 , HORVU2Hr1G023210.1 , HORVU2Hr1G023210.4
Wheat -
Populus -


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cDNA sequences
Sobic.002G401700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G007400 peptidase, T1 family, putative, expressed K02739: 20S proteasome subunit beta 2
2 Sobic.007G012900 50S ribosomal protein L19, chloroplast precursor, putative, expressed -
3 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
4 Sobic.007G117800 cytochrome b561, putative, expressed K08360: cytochrome b-561
5 Sobic.001G050400 expressed protein -
6 Sobic.003G116600 syntaxin, putative, expressed K08488: syntaxin 7
7 Sobic.008G108500 histone deacetylase 6, putative, expressed -
8 Sobic.002G276800 ER lumen protein retaining receptor, putative, expressed -
9 Sobic.001G378200 tetratricopeptide repeat domain containing protein, expressed -
10 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
11 Sobic.005G184200 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
12 Sobic.010G197900 expressed protein -
13 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
14 Sobic.002G262200 expressed protein -
15 Sobic.007G192100 emp24/gp25L/p24 family protein, putative, expressed -
16 Sobic.003G276100 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
17 Sobic.009G112900 expressed protein K18170: LYRM7, complex III assembly factor LYRM7
18 Sobic.003G200600 CBS domain containing membrane protein, putative, expressed -
19 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
20 Sobic.001G112400 cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed K02258: COX11, cytochrome c oxidase assembly protein subunit 11


Gene co-expression network
sample Sobic002G401700 Sobic002G401700 Sobic010G007400 Sobic010G007400 Sobic002G401700--Sobic010G007400 Sobic007G012900 Sobic007G012900 Sobic002G401700--Sobic007G012900 Sobic004G159000 Sobic004G159000 Sobic002G401700--Sobic004G159000 Sobic007G117800 Sobic007G117800 Sobic002G401700--Sobic007G117800 Sobic001G050400 Sobic001G050400 Sobic002G401700--Sobic001G050400 Sobic003G116600 Sobic003G116600 Sobic002G401700--Sobic003G116600 Sobic008G108500 Sobic008G108500 Sobic002G401700--Sobic008G108500 Sobic002G276800 Sobic002G276800 Sobic002G401700--Sobic002G276800 Sobic001G378200 Sobic001G378200 Sobic002G401700--Sobic001G378200 Sobic004G030000 Sobic004G030000 Sobic010G007400--Sobic004G030000 Sobic002G090700 Sobic002G090700 Sobic010G007400--Sobic002G090700 Sobic010G007400--Sobic003G116600 Sobic010G007400--Sobic002G401700 Sobic010G007400--Sobic004G159000 Sobic001G031900 Sobic001G031900 Sobic010G007400--Sobic001G031900 Sobic007G013900 Sobic007G013900 Sobic010G007400--Sobic007G013900 Sobic003G152900 Sobic003G152900 Sobic010G007400--Sobic003G152900 Sobic001G074700 Sobic001G074700 Sobic010G007400--Sobic001G074700 Sobic001G181500 Sobic001G181500 Sobic007G012900--Sobic001G181500 Sobic003G276100 Sobic003G276100 Sobic007G012900--Sobic003G276100 Sobic007G012900--Sobic002G401700 Sobic001G008100 Sobic001G008100 Sobic007G012900--Sobic001G008100 Sobic006G041800 Sobic006G041800 Sobic007G012900--Sobic006G041800 Sobic003G148900 Sobic003G148900 Sobic007G012900--Sobic003G148900 Sobic003G135600 Sobic003G135600 Sobic007G012900--Sobic003G135600 Sobic009G191400 Sobic009G191400 Sobic007G012900--Sobic009G191400 Sobic002G079700 Sobic002G079700 Sobic007G012900--Sobic002G079700 Sobic004G159000--Sobic007G013900 Sobic004G344800 Sobic004G344800 Sobic004G159000--Sobic004G344800 Sobic002G262200 Sobic002G262200 Sobic004G159000--Sobic002G262200 Sobic004G159000--Sobic004G030000 Sobic003G196600 Sobic003G196600 Sobic004G159000--Sobic003G196600 Sobic004G159000--Sobic002G090700 Sobic004G159000--Sobic003G152900 Sobic002G260200 Sobic002G260200 Sobic004G159000--Sobic002G260200 Sobic004G159000--Sobic010G007400 Sobic007G117800--Sobic003G148900 Sobic001G443200 Sobic001G443200 Sobic007G117800--Sobic001G443200 Sobic007G117800--Sobic002G401700 Sobic007G117800--Sobic003G276100 Sobic007G117800--Sobic007G012900 Sobic005G184200 Sobic005G184200 Sobic007G117800--Sobic005G184200 Sobic007G117800--Sobic004G159000 Sobic003G200600 Sobic003G200600 Sobic007G117800--Sobic003G200600 Sobic007G117800--Sobic002G262200 Sobic004G039400 Sobic004G039400 Sobic001G050400--Sobic004G039400 Sobic001G050400--Sobic002G401700 Sobic001G050400--Sobic007G012900 Sobic001G050400--Sobic001G008100 Sobic001G214200 Sobic001G214200 Sobic001G050400--Sobic001G214200 Sobic001G178500 Sobic001G178500 Sobic001G050400--Sobic001G178500 Sobic001G050400--Sobic001G443200 Sobic001G050400--Sobic002G262200 Sobic010G040900 Sobic010G040900 Sobic001G050400--Sobic010G040900 Sobic003G116600--Sobic002G090700 Sobic003G116600--Sobic010G007400 Sobic003G116600--Sobic005G184200 Sobic003G116600--Sobic004G159000 Sobic004G339300 Sobic004G339300 Sobic003G116600--Sobic004G339300 Sobic001G367000 Sobic001G367000 Sobic003G116600--Sobic001G367000 Sobic004G202100 Sobic004G202100 Sobic003G116600--Sobic004G202100 Sobic001G309500 Sobic001G309500 Sobic003G116600--Sobic001G309500 Sobic003G116600--Sobic002G401700 Sobic007G192100 Sobic007G192100 Sobic008G108500--Sobic007G192100 Sobic002G176400 Sobic002G176400 Sobic008G108500--Sobic002G176400 Sobic003G189900 Sobic003G189900 Sobic008G108500--Sobic003G189900 Sobic008G108500--Sobic002G401700 Sobic001G036700 Sobic001G036700 Sobic008G108500--Sobic001G036700 Sobic007G038800 Sobic007G038800 Sobic008G108500--Sobic007G038800 Sobic004G122000 Sobic004G122000 Sobic008G108500--Sobic004G122000 Sobic008G108500--Sobic007G117800 Sobic009G086200 Sobic009G086200 Sobic008G108500--Sobic009G086200 Sobic001G485300 Sobic001G485300 Sobic002G276800--Sobic001G485300 Sobic002G276800--Sobic001G008100 Sobic007G148400 Sobic007G148400 Sobic002G276800--Sobic007G148400 Sobic002G276800--Sobic006G041800 Sobic003G190600 Sobic003G190600 Sobic002G276800--Sobic003G190600 Sobic003G058500 Sobic003G058500 Sobic002G276800--Sobic003G058500 Sobic001G061200 Sobic001G061200 Sobic002G276800--Sobic001G061200 Sobic001G193100 Sobic001G193100 Sobic002G276800--Sobic001G193100 Sobic002G276800--Sobic002G401700 Sobic001G465400 Sobic001G465400 Sobic001G378200--Sobic001G465400 Sobic001G112400 Sobic001G112400 Sobic001G378200--Sobic001G112400 Sobic006G012700 Sobic006G012700 Sobic001G378200--Sobic006G012700 Sobic004G078700 Sobic004G078700 Sobic001G378200--Sobic004G078700 Sobic001G378200--Sobic004G039400 Sobic001G378200--Sobic001G443200 Sobic001G378200--Sobic001G008100 Sobic001G378200--Sobic002G262200 Sobic005G207400 Sobic005G207400 Sobic001G378200--Sobic005G207400
Octagon: transcription factors


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