Gene annotation
Transcriptome id Sobic.010G007400.1
Synonym Sb10g000900, PBB1
Functional annotation peptidase, T1 family, putative, expressed
UniProt A0A194YGP1
Pfam PF00227
Panther DB PTHR11599 PTHR11599:SF44
NCBI CDD KOG0173; 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1
KEGG Orthology K02739; 20S proteasome subunit beta 2
Gene Ontology GO:0005839; proteasome core complex GO:0004298threonine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT3G27430 : N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
RAP-DB (Rice) LOC_Os05g09490.2 : peptidase, T1 family, putative, expressed
MaizeGDB (Corn) Zm00025a041176 , Zm00025a045478
Brachypodium KQK07148 , KQK03107
Barley HORVU1Hr1G028190.4 , HORVU1Hr1G028190.3 , HORVU1Hr1G028190.2 , HORVU1Hr1G028190.1
Wheat TraesCS1A02G122700 , TraesCS1D02G123600 , TraesCS1D02G123600
Populus PNS95657


JBrowse

Open New Page


cDNA sequences
Sobic.010G007400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G030000 mitochondrial ATP synthase precursor, putative, expressed -
2 Sobic.002G090700 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
3 Sobic.003G116600 syntaxin, putative, expressed K08488: syntaxin 7
4 Sobic.002G401700 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
5 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
6 Sobic.001G031900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
7 Sobic.007G013900 rickettsia 17 kDa surface antigen family protein, expressed -
8 Sobic.003G152900 -(PubMedID : 26976818)@dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
9 Sobic.001G074700 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
10 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
11 Sobic.009G112900 expressed protein K18170: LYRM7, complex III assembly factor LYRM7
12 Sobic.002G342000 protein phosphatase 2C, putative, expressed -
13 Sobic.001G181500 expressed protein -
14 Sobic.006G013000 succinate dehydrogenase subunit 3, putative, expressed K00236: SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit
15 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -
16 Sobic.007G012900 50S ribosomal protein L19, chloroplast precursor, putative, expressed -
17 Sobic.002G262200 expressed protein -
18 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
19 Sobic.008G136800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
20 Sobic.006G203900 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G


Gene co-expression network
sample Sobic010G007400 Sobic010G007400 Sobic004G030000 Sobic004G030000 Sobic010G007400--Sobic004G030000 Sobic002G090700 Sobic002G090700 Sobic010G007400--Sobic002G090700 Sobic003G116600 Sobic003G116600 Sobic010G007400--Sobic003G116600 Sobic002G401700 Sobic002G401700 Sobic010G007400--Sobic002G401700 Sobic004G159000 Sobic004G159000 Sobic010G007400--Sobic004G159000 Sobic001G031900 Sobic001G031900 Sobic010G007400--Sobic001G031900 Sobic007G013900 Sobic007G013900 Sobic010G007400--Sobic007G013900 Sobic003G152900 Sobic003G152900 Sobic010G007400--Sobic003G152900 Sobic001G074700 Sobic001G074700 Sobic010G007400--Sobic001G074700 Sobic004G030000--Sobic003G152900 Sobic001G350600 Sobic001G350600 Sobic004G030000--Sobic001G350600 Sobic001G465800 Sobic001G465800 Sobic004G030000--Sobic001G465800 Sobic002G309700 Sobic002G309700 Sobic004G030000--Sobic002G309700 Sobic004G030000--Sobic001G074700 Sobic004G170400 Sobic004G170400 Sobic004G030000--Sobic004G170400 Sobic004G030000--Sobic010G007400 Sobic004G344800 Sobic004G344800 Sobic004G030000--Sobic004G344800 Sobic004G030000--Sobic004G159000 Sobic002G090700--Sobic003G116600 Sobic002G090700--Sobic010G007400 Sobic003G217100 Sobic003G217100 Sobic002G090700--Sobic003G217100 Sobic002G090700--Sobic004G159000 Sobic002G090700--Sobic003G152900 Sobic004G066800 Sobic004G066800 Sobic002G090700--Sobic004G066800 Sobic001G309500 Sobic001G309500 Sobic002G090700--Sobic001G309500 Sobic002G078400 Sobic002G078400 Sobic002G090700--Sobic002G078400 Sobic002G090700--Sobic001G031900 Sobic003G116600--Sobic002G090700 Sobic003G116600--Sobic010G007400 Sobic005G184200 Sobic005G184200 Sobic003G116600--Sobic005G184200 Sobic003G116600--Sobic004G159000 Sobic004G339300 Sobic004G339300 Sobic003G116600--Sobic004G339300 Sobic001G367000 Sobic001G367000 Sobic003G116600--Sobic001G367000 Sobic004G202100 Sobic004G202100 Sobic003G116600--Sobic004G202100 Sobic003G116600--Sobic001G309500 Sobic003G116600--Sobic002G401700 Sobic002G401700--Sobic010G007400 Sobic007G012900 Sobic007G012900 Sobic002G401700--Sobic007G012900 Sobic002G401700--Sobic004G159000 Sobic007G117800 Sobic007G117800 Sobic002G401700--Sobic007G117800 Sobic001G050400 Sobic001G050400 Sobic002G401700--Sobic001G050400 Sobic002G401700--Sobic003G116600 Sobic008G108500 Sobic008G108500 Sobic002G401700--Sobic008G108500 Sobic002G276800 Sobic002G276800 Sobic002G401700--Sobic002G276800 Sobic001G378200 Sobic001G378200 Sobic002G401700--Sobic001G378200 Sobic004G159000--Sobic007G013900 Sobic004G159000--Sobic004G344800 Sobic002G262200 Sobic002G262200 Sobic004G159000--Sobic002G262200 Sobic004G159000--Sobic004G030000 Sobic003G196600 Sobic003G196600 Sobic004G159000--Sobic003G196600 Sobic004G159000--Sobic002G090700 Sobic004G159000--Sobic003G152900 Sobic002G260200 Sobic002G260200 Sobic004G159000--Sobic002G260200 Sobic004G159000--Sobic010G007400 Sobic006G058900 Sobic006G058900 Sobic001G031900--Sobic006G058900 Sobic001G031900--Sobic004G202100 Sobic002G395000 Sobic002G395000 Sobic001G031900--Sobic002G395000 Sobic001G031900--Sobic001G350600 Sobic001G031900--Sobic004G344800 Sobic001G031900--Sobic003G152900 Sobic001G031900--Sobic004G170400 Sobic001G458800 Sobic001G458800 Sobic001G031900--Sobic001G458800 Sobic001G031900--Sobic004G030000 Sobic009G215300 Sobic009G215300 Sobic007G013900--Sobic009G215300 Sobic007G013900--Sobic004G159000 Sobic007G013900--Sobic002G260200 Sobic006G013000 Sobic006G013000 Sobic007G013900--Sobic006G013000 Sobic007G013900--Sobic002G309700 Sobic001G031800 Sobic001G031800 Sobic007G013900--Sobic001G031800 Sobic004G260200 Sobic004G260200 Sobic007G013900--Sobic004G260200 Sobic007G013900--Sobic002G395000 Sobic008G136800 Sobic008G136800 Sobic007G013900--Sobic008G136800 Sobic003G152900--Sobic004G030000 Sobic003G152900--Sobic001G074700 Sobic003G152900--Sobic004G170400 Sobic003G152900--Sobic001G350600 Sobic010G154700 Sobic010G154700 Sobic003G152900--Sobic010G154700 Sobic003G152900--Sobic001G031900 Sobic003G152900--Sobic002G090700 Sobic003G152900--Sobic004G159000 Sobic003G152900--Sobic004G066800 Sobic001G074700--Sobic004G170400 Sobic001G074700--Sobic001G350600 Sobic004G259200 Sobic004G259200 Sobic001G074700--Sobic004G259200 Sobic001G074700--Sobic002G309700 Sobic001G074700--Sobic010G154700 Sobic002G296200 Sobic002G296200 Sobic001G074700--Sobic002G296200 Sobic009G119900 Sobic009G119900 Sobic001G074700--Sobic009G119900 Sobic001G047800 Sobic001G047800 Sobic001G074700--Sobic001G047800 Sobic002G418400 Sobic002G418400 Sobic001G074700--Sobic002G418400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.