Gene annotation
Transcriptome id Sobic.004G054700.1
Synonym Sb04g004650
Functional annotation expressed protein
UniProt C5XW32
Pfam PF08615
Panther DB PTHR21726 PTHR21726:SF42
NCBI CDD -
KEGG Orthology K10745; ribonuclease H2 subunit C
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G39440 : -
RAP-DB (Rice) LOC_Os02g07240.1 : expressed protein
MaizeGDB (Corn) Zm00025a019073
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G485300 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
2 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
3 Sobic.009G209900 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
4 Sobic.006G041800 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
5 Sobic.002G276800 ER lumen protein retaining receptor, putative, expressed -
6 Sobic.003G085500 signal peptidase complex subunit 3, putative, expressed K12948: SPCS3, signal peptidase complex subunit 3
7 Sobic.003G395300 TBC domain containing protein, expressed -
8 Sobic.001G050400 expressed protein -
9 Sobic.001G061200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
10 Sobic.003G374000 ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed K17618: ubiquitin-like domain-containing CTD phosphatase 1
11 Sobic.007G003100 transmembrane protein 18, putative, expressed -
12 Sobic.002G153400 meiotic coiled-coil protein 7, putative, expressed -
13 Sobic.001G352800 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
14 Sobic.004G186100 expressed protein -
15 Sobic.009G216700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2
16 Sobic.001G178500 chloroplast 30S ribosomal protein S19, putative, expressed K02965: RP-S19, small subunit ribosomal protein S19
17 Sobic.004G021000 cyclin-dependent kinase A-2, putative, expressed K02206: cyclin-dependent kinase 2
18 Sobic.003G190600 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
19 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
20 Sobic.010G197900 expressed protein -


Gene co-expression network
sample Sobic004G054700 Sobic004G054700 Sobic001G485300 Sobic001G485300 Sobic004G054700--Sobic001G485300 Sobic001G008100 Sobic001G008100 Sobic004G054700--Sobic001G008100 Sobic009G209900 Sobic009G209900 Sobic004G054700--Sobic009G209900 Sobic006G041800 Sobic006G041800 Sobic004G054700--Sobic006G041800 Sobic002G276800 Sobic002G276800 Sobic004G054700--Sobic002G276800 Sobic003G085500 Sobic003G085500 Sobic004G054700--Sobic003G085500 Sobic003G395300 Sobic003G395300 Sobic004G054700--Sobic003G395300 Sobic001G050400 Sobic001G050400 Sobic004G054700--Sobic001G050400 Sobic001G061200 Sobic001G061200 Sobic004G054700--Sobic001G061200 Sobic002G348400 Sobic002G348400 Sobic001G485300--Sobic002G348400 Sobic001G485300--Sobic003G085500 Sobic001G485300--Sobic002G276800 Sobic001G485300--Sobic006G041800 Sobic003G190600 Sobic003G190600 Sobic001G485300--Sobic003G190600 Sobic002G392400 Sobic002G392400 Sobic001G485300--Sobic002G392400 Sobic001G485300--Sobic004G054700 Sobic001G347700 Sobic001G347700 Sobic001G485300--Sobic001G347700 Sobic001G352800 Sobic001G352800 Sobic001G485300--Sobic001G352800 Sobic004G039400 Sobic004G039400 Sobic001G008100--Sobic004G039400 Sobic001G008100--Sobic006G041800 Sobic001G465400 Sobic001G465400 Sobic001G008100--Sobic001G465400 Sobic010G040900 Sobic010G040900 Sobic001G008100--Sobic010G040900 Sobic001G387800 Sobic001G387800 Sobic001G008100--Sobic001G387800 Sobic003G276100 Sobic003G276100 Sobic001G008100--Sobic003G276100 Sobic002G079700 Sobic002G079700 Sobic001G008100--Sobic002G079700 Sobic009G191400 Sobic009G191400 Sobic001G008100--Sobic009G191400 Sobic001G008100--Sobic002G276800 Sobic007G119600 Sobic007G119600 Sobic009G209900--Sobic007G119600 Sobic004G297700 Sobic004G297700 Sobic009G209900--Sobic004G297700 Sobic010G032600 Sobic010G032600 Sobic009G209900--Sobic010G032600 Sobic002G255400 Sobic002G255400 Sobic009G209900--Sobic002G255400 Sobic009G209900--Sobic006G041800 Sobic009G209900--Sobic004G054700 Sobic001G387200 Sobic001G387200 Sobic009G209900--Sobic001G387200 Sobic001G457000 Sobic001G457000 Sobic009G209900--Sobic001G457000 Sobic004G173700 Sobic004G173700 Sobic009G209900--Sobic004G173700 Sobic006G041800--Sobic007G119600 Sobic006G041800--Sobic001G008100 Sobic006G041800--Sobic003G276100 Sobic006G041800--Sobic001G485300 Sobic006G041800--Sobic002G276800 Sobic007G012900 Sobic007G012900 Sobic006G041800--Sobic007G012900 Sobic003G388700 Sobic003G388700 Sobic006G041800--Sobic003G388700 Sobic006G041800--Sobic001G387800 Sobic006G041800--Sobic002G255400 Sobic002G276800--Sobic001G485300 Sobic002G276800--Sobic001G008100 Sobic007G148400 Sobic007G148400 Sobic002G276800--Sobic007G148400 Sobic002G276800--Sobic006G041800 Sobic002G276800--Sobic003G190600 Sobic003G058500 Sobic003G058500 Sobic002G276800--Sobic003G058500 Sobic002G276800--Sobic001G061200 Sobic001G193100 Sobic001G193100 Sobic002G276800--Sobic001G193100 Sobic002G401700 Sobic002G401700 Sobic002G276800--Sobic002G401700 Sobic003G085500--Sobic001G485300 Sobic003G085500--Sobic001G352800 Sobic010G002800 Sobic010G002800 Sobic003G085500--Sobic010G002800 Sobic004G354100 Sobic004G354100 Sobic003G085500--Sobic004G354100 Sobic007G022700 Sobic007G022700 Sobic003G085500--Sobic007G022700 Sobic003G085500--Sobic002G392400 Sobic003G085500--Sobic002G276800 Sobic003G085500--Sobic003G388700 Sobic004G186100 Sobic004G186100 Sobic003G085500--Sobic004G186100 Sobic001G207500 Sobic001G207500 Sobic003G395300--Sobic001G207500 Sobic001G467100 Sobic001G467100 Sobic003G395300--Sobic001G467100 Sobic006G039400 Sobic006G039400 Sobic003G395300--Sobic006G039400 Sobic001G358500 Sobic001G358500 Sobic003G395300--Sobic001G358500 Sobic008G129600 Sobic008G129600 Sobic003G395300--Sobic008G129600 Sobic002G160700 Sobic002G160700 Sobic003G395300--Sobic002G160700 Sobic002G131400 Sobic002G131400 Sobic003G395300--Sobic002G131400 Sobic010G179700 Sobic010G179700 Sobic003G395300--Sobic010G179700 Sobic003G182300 Sobic003G182300 Sobic003G395300--Sobic003G182300 Sobic001G050400--Sobic004G039400 Sobic001G050400--Sobic002G401700 Sobic001G050400--Sobic007G012900 Sobic001G050400--Sobic001G008100 Sobic001G214200 Sobic001G214200 Sobic001G050400--Sobic001G214200 Sobic001G178500 Sobic001G178500 Sobic001G050400--Sobic001G178500 Sobic001G443200 Sobic001G443200 Sobic001G050400--Sobic001G443200 Sobic002G262200 Sobic002G262200 Sobic001G050400--Sobic002G262200 Sobic001G050400--Sobic010G040900 Sobic001G061200--Sobic001G193100 Sobic007G173700 Sobic007G173700 Sobic001G061200--Sobic007G173700 Sobic003G222700 Sobic003G222700 Sobic001G061200--Sobic003G222700 Sobic009G207200 Sobic009G207200 Sobic001G061200--Sobic009G207200 Sobic001G061200--Sobic008G129600 Sobic001G061200--Sobic002G276800 Sobic002G029300 Sobic002G029300 Sobic001G061200--Sobic002G029300 Sobic003G148900 Sobic003G148900 Sobic001G061200--Sobic003G148900 Sobic001G023100 Sobic001G023100 Sobic001G061200--Sobic001G023100
Octagon: transcription factors


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