Gene annotation
Transcriptome id Sobic.001G268300.1,Sobic.001G268300.2
Synonym Sb01g026340
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
queuine tRNA-ribosyltransferase, putative, expressed
UniProt A0A1Z5S7S1 , C5WP43
Pfam PF01702
Panther DB PTHR21148 PTHR21148:SF26
NCBI CDD KOG3909; Queuine-tRNA ribosyltransferase
KEGG Orthology K15407; queuine tRNA-ribosyltransferase subunit QTRTD1
Gene Ontology GO:0008616; queuosine biosynthetic process GO:0008479queuine tRNA-ribosyltransferase activity GO:0006400tRNA modification


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os10g05220.1,LOC_Os10g05220.2 : queuine tRNA-ribosyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a003766
Brachypodium KQJ95554 , KQJ95555 , KQJ95552 , KQJ95553 , KQJ95551
Barley HORVU5Hr1G105040.19 , HORVU5Hr1G105040.18 , HORVU5Hr1G105040.13 , HORVU5Hr1G105040.12 , HORVU5Hr1G105040.11 , HORVU5Hr1G105040.10 , HORVU5Hr1G105040.17 , HORVU5Hr1G105040.16 , HORVU5Hr1G105040.15 , HORVU5Hr1G105040.14 , HORVU5Hr1G105040.20 , HORVU5Hr1G105040.9 , HORVU5Hr1G105040.8 , HORVU5Hr1G105040.3 , HORVU5Hr1G105040.2 , HORVU5Hr1G105040.1 , HORVU5Hr1G105040.7 , HORVU5Hr1G105040.6 , HORVU5Hr1G105040.5 , HORVU5Hr1G105040.4
Wheat TraesCS5A02G435700 , TraesCS5D02G443400 , TraesCS5B02G438900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
2 Sobic.008G179000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
5 Sobic.008G031200 pentatricopeptide, putative, expressed -
6 Sobic.003G142400 pentatricopeptide, putative, expressed -
7 Sobic.010G252200 PPR repeat domain containing protein, putative, expressed -
8 Sobic.004G282500 PPR repeat domain containing protein, putative, expressed -
9 Sobic.005G078700 OsFBX411 - F-box domain containing protein, expressed -
10 Sobic.001G140700 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
11 Sobic.001G203600 PPR repeat domain containing protein, putative, expressed -
12 Sobic.004G064600 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
13 Sobic.007G140100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
14 Sobic.001G486600 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
15 Sobic.004G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
16 Sobic.003G204100 expressed protein -
17 Sobic.001G529500 PPR repeat domain containing protein, putative, expressed -
18 Sobic.004G069400 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
19 Sobic.010G068900 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
20 Sobic.004G215600 - K15271: HFM1, ATP-dependent DNA helicase HFM1/MER3


Gene co-expression network
sample Sobic001G268300 Sobic001G268300 Sobic009G041800 Sobic009G041800 Sobic001G268300--Sobic009G041800 Sobic008G179000 Sobic008G179000 Sobic001G268300--Sobic008G179000 Sobic006G262800 Sobic006G262800 Sobic001G268300--Sobic006G262800 Sobic002G362200 Sobic002G362200 Sobic001G268300--Sobic002G362200 Sobic008G031200 Sobic008G031200 Sobic001G268300--Sobic008G031200 Sobic003G142400 Sobic003G142400 Sobic001G268300--Sobic003G142400 Sobic010G252200 Sobic010G252200 Sobic001G268300--Sobic010G252200 Sobic004G282500 Sobic004G282500 Sobic001G268300--Sobic004G282500 Sobic005G078700 Sobic005G078700 Sobic001G268300--Sobic005G078700 Sobic003G130000 Sobic003G130000 Sobic009G041800--Sobic003G130000 Sobic004G212100 Sobic004G212100 Sobic009G041800--Sobic004G212100 Sobic001G011000 Sobic001G011000 Sobic009G041800--Sobic001G011000 Sobic002G367800 Sobic002G367800 Sobic009G041800--Sobic002G367800 Sobic001G167500 Sobic001G167500 Sobic009G041800--Sobic001G167500 Sobic001G413100 Sobic001G413100 Sobic009G041800--Sobic001G413100 Sobic009G041800--Sobic001G268300 Sobic003G113400 Sobic003G113400 Sobic009G041800--Sobic003G113400 Sobic010G134100 Sobic010G134100 Sobic009G041800--Sobic010G134100 Sobic010G252700 Sobic010G252700 Sobic008G179000--Sobic010G252700 Sobic008G179000--Sobic008G031200 Sobic008G179000--Sobic001G268300 Sobic008G179000--Sobic002G362200 Sobic007G123100 Sobic007G123100 Sobic008G179000--Sobic007G123100 Sobic001G149100 Sobic001G149100 Sobic008G179000--Sobic001G149100 Sobic004G241000 Sobic004G241000 Sobic008G179000--Sobic004G241000 Sobic004G256900 Sobic004G256900 Sobic008G179000--Sobic004G256900 Sobic008G009000 Sobic008G009000 Sobic008G179000--Sobic008G009000 Sobic010G068900 Sobic010G068900 Sobic006G262800--Sobic010G068900 Sobic009G154900 Sobic009G154900 Sobic006G262800--Sobic009G154900 Sobic001G478900 Sobic001G478900 Sobic006G262800--Sobic001G478900 Sobic006G262800--Sobic004G256900 Sobic002G172500 Sobic002G172500 Sobic006G262800--Sobic002G172500 Sobic008G163400 Sobic008G163400 Sobic006G262800--Sobic008G163400 Sobic001G052100 Sobic001G052100 Sobic006G262800--Sobic001G052100 Sobic006G262800--Sobic001G268300 Sobic006G262800--Sobic004G241000 Sobic008G111600 Sobic008G111600 Sobic002G362200--Sobic008G111600 Sobic002G362200--Sobic010G252700 Sobic008G090000 Sobic008G090000 Sobic002G362200--Sobic008G090000 Sobic002G362200--Sobic008G179000 Sobic002G426100 Sobic002G426100 Sobic002G362200--Sobic002G426100 Sobic001G537400 Sobic001G537400 Sobic002G362200--Sobic001G537400 Sobic002G362200--Sobic001G268300 Sobic002G362200--Sobic008G031200 Sobic003G147500 Sobic003G147500 Sobic002G362200--Sobic003G147500 Sobic008G031200--Sobic008G179000 Sobic008G031200--Sobic001G268300 Sobic008G031200--Sobic010G252700 Sobic008G031200--Sobic002G362200 Sobic003G397100 Sobic003G397100 Sobic008G031200--Sobic003G397100 Sobic003G153900 Sobic003G153900 Sobic008G031200--Sobic003G153900 Sobic002G084400 Sobic002G084400 Sobic008G031200--Sobic002G084400 Sobic008G031200--Sobic001G537400 Sobic002G123600 Sobic002G123600 Sobic008G031200--Sobic002G123600 Sobic003G142400--Sobic001G268300 Sobic003G142400--Sobic006G262800 Sobic003G142400--Sobic010G068900 Sobic003G142400--Sobic001G478900 Sobic003G184300 Sobic003G184300 Sobic003G142400--Sobic003G184300 Sobic003G142400--Sobic008G163400 Sobic003G142400--Sobic004G241000 Sobic003G142400--Sobic008G179000 Sobic003G142400--Sobic009G041800 Sobic006G126800 Sobic006G126800 Sobic010G252200--Sobic006G126800 Sobic005G210500 Sobic005G210500 Sobic010G252200--Sobic005G210500 Sobic009G081800 Sobic009G081800 Sobic010G252200--Sobic009G081800 Sobic001G486600 Sobic001G486600 Sobic010G252200--Sobic001G486600 Sobic003G184666 Sobic003G184666 Sobic010G252200--Sobic003G184666 Sobic006G119300 Sobic006G119300 Sobic010G252200--Sobic006G119300 Sobic010G252200--Sobic001G268300 Sobic010G252200--Sobic002G362200 Sobic003G045450 Sobic003G045450 Sobic010G252200--Sobic003G045450 Sobic004G282500--Sobic001G268300 Sobic004G282500--Sobic006G262800 Sobic003G325900 Sobic003G325900 Sobic004G282500--Sobic003G325900 Sobic004G282500--Sobic005G078700 Sobic001G122200 Sobic001G122200 Sobic004G282500--Sobic001G122200 Sobic004G282500--Sobic009G154900 Sobic001G203600 Sobic001G203600 Sobic004G282500--Sobic001G203600 Sobic004G282500--Sobic008G031200 Sobic003G412000 Sobic003G412000 Sobic004G282500--Sobic003G412000 Sobic005G078700--Sobic003G325900 Sobic010G143600 Sobic010G143600 Sobic005G078700--Sobic010G143600 Sobic005G078700--Sobic003G184666 Sobic005G078700--Sobic001G268300 Sobic005G078700--Sobic002G362200 Sobic005G078700--Sobic006G262800 Sobic005G078700--Sobic004G282500 Sobic005G078700--Sobic009G154900 Sobic009G105400 Sobic009G105400 Sobic005G078700--Sobic009G105400
Octagon: transcription factors


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