Gene annotation
Transcriptome id Sobic.005G078700.2
Synonym Sb05g006420
Functional annotation OsFBX411 - F-box domain containing protein, expressed
UniProt A0A1B6PQV2
Pfam PF00646
Panther DB PTHR32212 PTHR32212:SF130
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G59200 : F-box/RNI-like superfamily protein
RAP-DB (Rice) LOC_Os11g09970.1 : OsFBX411 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU6Hr1G012590.1
Wheat TraesCS6D02G067100 , TraesCS6B02G093600 , TraesCS6B02G093600 , TraesCS6A02G069900 , TraesCS6A02G070100 , TraesCS6D02G067600 , TraesCS6D02G068200 , TraesCS6A02G070400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G325900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat, putative, expressed -
2 Sobic.010G143600 ATP-binding region, ATPase-like domain containing protein, expressed -
3 Sobic.003G184666 - -
4 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
5 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
6 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.004G282500 PPR repeat domain containing protein, putative, expressed -
8 Sobic.009G154900 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ
9 Sobic.009G105400 OsFBX135 - F-box domain containing protein, expressed -
10 Sobic.003G204100 expressed protein -
11 Sobic.003G194800 EF hand family protein, putative, expressed -
12 Sobic.007G038700 zinc finger, C3HC4 type domain containing protein, expressed K11985: TRAIP, TRAF-interacting protein
13 Sobic.008G031200 pentatricopeptide, putative, expressed -
14 Sobic.010G098600 heat shock protein DnaJ, putative, expressed -
15 Sobic.006G088820 - -
16 Sobic.010G252200 PPR repeat domain containing protein, putative, expressed -
17 Sobic.003G045450 - -
18 Sobic.008G123200 AAA-type ATPase family protein, putative, expressed -
19 Sobic.003G397100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
20 Sobic.004G215600 - K15271: HFM1, ATP-dependent DNA helicase HFM1/MER3


Gene co-expression network
sample Sobic005G078700 Sobic005G078700 Sobic003G325900 Sobic003G325900 Sobic005G078700--Sobic003G325900 Sobic010G143600 Sobic010G143600 Sobic005G078700--Sobic010G143600 Sobic003G184666 Sobic003G184666 Sobic005G078700--Sobic003G184666 Sobic001G268300 Sobic001G268300 Sobic005G078700--Sobic001G268300 Sobic002G362200 Sobic002G362200 Sobic005G078700--Sobic002G362200 Sobic006G262800 Sobic006G262800 Sobic005G078700--Sobic006G262800 Sobic004G282500 Sobic004G282500 Sobic005G078700--Sobic004G282500 Sobic009G154900 Sobic009G154900 Sobic005G078700--Sobic009G154900 Sobic009G105400 Sobic009G105400 Sobic005G078700--Sobic009G105400 Sobic003G325900--Sobic005G078700 Sobic003G325900--Sobic004G282500 Sobic003G325900--Sobic003G184666 Sobic003G325900--Sobic001G268300 Sobic003G325900--Sobic002G362200 Sobic003G045450 Sobic003G045450 Sobic003G325900--Sobic003G045450 Sobic008G123200 Sobic008G123200 Sobic003G325900--Sobic008G123200 Sobic006G088820 Sobic006G088820 Sobic003G325900--Sobic006G088820 Sobic003G412000 Sobic003G412000 Sobic003G325900--Sobic003G412000 Sobic010G143600--Sobic005G078700 Sobic002G173400 Sobic002G173400 Sobic010G143600--Sobic002G173400 Sobic003G194800 Sobic003G194800 Sobic010G143600--Sobic003G194800 Sobic009G120400 Sobic009G120400 Sobic010G143600--Sobic009G120400 Sobic003G183466 Sobic003G183466 Sobic010G143600--Sobic003G183466 Sobic003G204100 Sobic003G204100 Sobic010G143600--Sobic003G204100 Sobic006G008300 Sobic006G008300 Sobic010G143600--Sobic006G008300 Sobic003G397100 Sobic003G397100 Sobic010G143600--Sobic003G397100 Sobic010G143600--Sobic003G184666 Sobic010G252200 Sobic010G252200 Sobic003G184666--Sobic010G252200 Sobic003G184666--Sobic005G078700 Sobic003G184666--Sobic010G143600 Sobic003G184666--Sobic003G183466 Sobic006G126800 Sobic006G126800 Sobic003G184666--Sobic006G126800 Sobic003G184666--Sobic003G325900 Sobic003G184666--Sobic003G045450 Sobic003G184666--Sobic002G362200 Sobic004G222150 Sobic004G222150 Sobic003G184666--Sobic004G222150 Sobic009G041800 Sobic009G041800 Sobic001G268300--Sobic009G041800 Sobic008G179000 Sobic008G179000 Sobic001G268300--Sobic008G179000 Sobic001G268300--Sobic006G262800 Sobic001G268300--Sobic002G362200 Sobic008G031200 Sobic008G031200 Sobic001G268300--Sobic008G031200 Sobic003G142400 Sobic003G142400 Sobic001G268300--Sobic003G142400 Sobic001G268300--Sobic010G252200 Sobic001G268300--Sobic004G282500 Sobic001G268300--Sobic005G078700 Sobic008G111600 Sobic008G111600 Sobic002G362200--Sobic008G111600 Sobic010G252700 Sobic010G252700 Sobic002G362200--Sobic010G252700 Sobic008G090000 Sobic008G090000 Sobic002G362200--Sobic008G090000 Sobic002G362200--Sobic008G179000 Sobic002G426100 Sobic002G426100 Sobic002G362200--Sobic002G426100 Sobic001G537400 Sobic001G537400 Sobic002G362200--Sobic001G537400 Sobic002G362200--Sobic001G268300 Sobic002G362200--Sobic008G031200 Sobic003G147500 Sobic003G147500 Sobic002G362200--Sobic003G147500 Sobic010G068900 Sobic010G068900 Sobic006G262800--Sobic010G068900 Sobic006G262800--Sobic009G154900 Sobic001G478900 Sobic001G478900 Sobic006G262800--Sobic001G478900 Sobic004G256900 Sobic004G256900 Sobic006G262800--Sobic004G256900 Sobic002G172500 Sobic002G172500 Sobic006G262800--Sobic002G172500 Sobic008G163400 Sobic008G163400 Sobic006G262800--Sobic008G163400 Sobic001G052100 Sobic001G052100 Sobic006G262800--Sobic001G052100 Sobic006G262800--Sobic001G268300 Sobic004G241000 Sobic004G241000 Sobic006G262800--Sobic004G241000 Sobic004G282500--Sobic001G268300 Sobic004G282500--Sobic006G262800 Sobic004G282500--Sobic003G325900 Sobic004G282500--Sobic005G078700 Sobic001G122200 Sobic001G122200 Sobic004G282500--Sobic001G122200 Sobic004G282500--Sobic009G154900 Sobic001G203600 Sobic001G203600 Sobic004G282500--Sobic001G203600 Sobic004G282500--Sobic008G031200 Sobic004G282500--Sobic003G412000 Sobic009G154900--Sobic006G262800 Sobic001G043200 Sobic001G043200 Sobic009G154900--Sobic001G043200 Sobic009G154900--Sobic003G194800 Sobic004G215600 Sobic004G215600 Sobic009G154900--Sobic004G215600 Sobic004G007900 Sobic004G007900 Sobic009G154900--Sobic004G007900 Sobic009G108400 Sobic009G108400 Sobic009G154900--Sobic009G108400 Sobic004G194100 Sobic004G194100 Sobic009G154900--Sobic004G194100 Sobic001G448100 Sobic001G448100 Sobic009G154900--Sobic001G448100 Sobic005G123400 Sobic005G123400 Sobic009G154900--Sobic005G123400 Sobic009G105400--Sobic006G088820 Sobic001G453500 Sobic001G453500 Sobic009G105400--Sobic001G453500 Sobic009G105400--Sobic006G008300 Sobic002G168000 Sobic002G168000 Sobic009G105400--Sobic002G168000 Sobic004G199200 Sobic004G199200 Sobic009G105400--Sobic004G199200 Sobic001G264201 Sobic001G264201 Sobic009G105400--Sobic001G264201 Sobic009G191500 Sobic009G191500 Sobic009G105400--Sobic009G191500 Sobic009G105400--Sobic010G143600 Sobic008G068100 Sobic008G068100 Sobic009G105400--Sobic008G068100
Octagon: transcription factors


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