Gene annotation
Transcriptome id Sobic.008G123200.2
Synonym
Functional annotation AAA-type ATPase family protein, putative, expressed
UniProt A0A1Z5R693
Pfam PF00498 PF05496
Panther DB PTHR23074 PTHR23074:SF70
NCBI CDD KOG0737; AAA+-type ATPase
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0009378four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT4G02480 : AAA-type ATPase family protein
RAP-DB (Rice) LOC_Os11g43970.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G138000 zinc knuckle domain containing protein, expressed -
2 Sobic.009G224300 expressed protein -
3 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
4 Sobic.001G448000 AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
5 Sobic.010G175000 expressed protein -
6 Sobic.007G038700 zinc finger, C3HC4 type domain containing protein, expressed K11985: TRAIP, TRAF-interacting protein
7 Sobic.004G123200 MYB family transcription factor, putative, expressed -
8 Sobic.009G105400 OsFBX135 - F-box domain containing protein, expressed -
9 Sobic.008G165266 - -
10 Sobic.009G053300 - -
11 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
12 Sobic.003G325900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat, putative, expressed -
13 Sobic.002G055800 zinc finger, C3HC4 type domain containing protein, expressed K16277: E3 ubiquitin-protein ligase DRIP
14 Sobic.004G139900 ATP binding, related, putative, expressed -
15 Sobic.008G165300 Protein kinase domain containing protein, expressed -
16 Sobic.006G088820 - -
17 Sobic.003G147500 PHS1, putative, expressed K14165: atypical dual specificity phosphatase
18 Sobic.006G016700 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
19 Sobic.009G200000 expressed protein -
20 Sobic.005G102800 OsSCP48 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II


Gene co-expression network
sample Sobic008G123200 Sobic008G123200 Sobic005G138000 Sobic005G138000 Sobic008G123200--Sobic005G138000 Sobic009G224300 Sobic009G224300 Sobic008G123200--Sobic009G224300 Sobic003G336500 Sobic003G336500 Sobic008G123200--Sobic003G336500 Sobic001G448000 Sobic001G448000 Sobic008G123200--Sobic001G448000 Sobic010G175000 Sobic010G175000 Sobic008G123200--Sobic010G175000 Sobic007G038700 Sobic007G038700 Sobic008G123200--Sobic007G038700 Sobic004G123200 Sobic004G123200 Sobic008G123200--Sobic004G123200 Sobic009G105400 Sobic009G105400 Sobic008G123200--Sobic009G105400 Sobic008G165266 Sobic008G165266 Sobic008G123200--Sobic008G165266 Sobic005G138000--Sobic008G123200 Sobic003G434300 Sobic003G434300 Sobic005G138000--Sobic003G434300 Sobic004G142400 Sobic004G142400 Sobic005G138000--Sobic004G142400 Sobic005G126701 Sobic005G126701 Sobic005G138000--Sobic005G126701 Sobic006G083900 Sobic006G083900 Sobic005G138000--Sobic006G083900 Sobic008G018100 Sobic008G018100 Sobic005G138000--Sobic008G018100 Sobic009G053300 Sobic009G053300 Sobic005G138000--Sobic009G053300 Sobic005G138000--Sobic008G165266 Sobic003G350400 Sobic003G350400 Sobic005G138000--Sobic003G350400 Sobic003G147500 Sobic003G147500 Sobic009G224300--Sobic003G147500 Sobic006G016700 Sobic006G016700 Sobic009G224300--Sobic006G016700 Sobic004G286200 Sobic004G286200 Sobic009G224300--Sobic004G286200 Sobic001G493100 Sobic001G493100 Sobic009G224300--Sobic001G493100 Sobic007G219100 Sobic007G219100 Sobic009G224300--Sobic007G219100 Sobic009G207400 Sobic009G207400 Sobic009G224300--Sobic009G207400 Sobic009G224300--Sobic003G350400 Sobic007G082000 Sobic007G082000 Sobic009G224300--Sobic007G082000 Sobic010G257000 Sobic010G257000 Sobic009G224300--Sobic010G257000 Sobic008G068100 Sobic008G068100 Sobic003G336500--Sobic008G068100 Sobic001G040600 Sobic001G040600 Sobic003G336500--Sobic001G040600 Sobic009G191500 Sobic009G191500 Sobic003G336500--Sobic009G191500 Sobic007G060600 Sobic007G060600 Sobic003G336500--Sobic007G060600 Sobic001G199500 Sobic001G199500 Sobic003G336500--Sobic001G199500 Sobic001G483800 Sobic001G483800 Sobic003G336500--Sobic001G483800 Sobic005G088900 Sobic005G088900 Sobic003G336500--Sobic005G088900 Sobic009G176300 Sobic009G176300 Sobic003G336500--Sobic009G176300 Sobic008G100400 Sobic008G100400 Sobic003G336500--Sobic008G100400 Sobic004G139900 Sobic004G139900 Sobic001G448000--Sobic004G139900 Sobic009G200000 Sobic009G200000 Sobic001G448000--Sobic009G200000 Sobic007G097100 Sobic007G097100 Sobic001G448000--Sobic007G097100 Sobic008G042200 Sobic008G042200 Sobic001G448000--Sobic008G042200 Sobic004G115700 Sobic004G115700 Sobic001G448000--Sobic004G115700 Sobic004G269100 Sobic004G269100 Sobic001G448000--Sobic004G269100 Sobic004G215100 Sobic004G215100 Sobic001G448000--Sobic004G215100 Sobic001G448000--Sobic008G123200 Sobic005G092700 Sobic005G092700 Sobic001G448000--Sobic005G092700 Sobic004G192500 Sobic004G192500 Sobic010G175000--Sobic004G192500 Sobic010G175000--Sobic010G257000 Sobic006G226000 Sobic006G226000 Sobic010G175000--Sobic006G226000 Sobic009G188900 Sobic009G188900 Sobic010G175000--Sobic009G188900 Sobic006G281900 Sobic006G281900 Sobic010G175000--Sobic006G281900 Sobic006G275500 Sobic006G275500 Sobic010G175000--Sobic006G275500 Sobic010G175000--Sobic006G016700 Sobic002G168000 Sobic002G168000 Sobic010G175000--Sobic002G168000 Sobic002G055800 Sobic002G055800 Sobic010G175000--Sobic002G055800 Sobic002G251800 Sobic002G251800 Sobic007G038700--Sobic002G251800 Sobic010G277200 Sobic010G277200 Sobic007G038700--Sobic010G277200 Sobic007G038700--Sobic008G123200 Sobic007G038700--Sobic003G336500 Sobic007G038700--Sobic009G105400 Sobic005G078700 Sobic005G078700 Sobic007G038700--Sobic005G078700 Sobic001G194700 Sobic001G194700 Sobic007G038700--Sobic001G194700 Sobic003G153900 Sobic003G153900 Sobic007G038700--Sobic003G153900 Sobic008G031200 Sobic008G031200 Sobic007G038700--Sobic008G031200 Sobic004G123200--Sobic002G055800 Sobic009G012500 Sobic009G012500 Sobic004G123200--Sobic009G012500 Sobic004G222150 Sobic004G222150 Sobic004G123200--Sobic004G222150 Sobic004G123200--Sobic006G083900 Sobic004G123200--Sobic006G226000 Sobic002G256900 Sobic002G256900 Sobic004G123200--Sobic002G256900 Sobic006G217800 Sobic006G217800 Sobic004G123200--Sobic006G217800 Sobic002G266300 Sobic002G266300 Sobic004G123200--Sobic002G266300 Sobic001G393101 Sobic001G393101 Sobic004G123200--Sobic001G393101 Sobic006G088820 Sobic006G088820 Sobic009G105400--Sobic006G088820 Sobic001G453500 Sobic001G453500 Sobic009G105400--Sobic001G453500 Sobic006G008300 Sobic006G008300 Sobic009G105400--Sobic006G008300 Sobic009G105400--Sobic002G168000 Sobic004G199200 Sobic004G199200 Sobic009G105400--Sobic004G199200 Sobic001G264201 Sobic001G264201 Sobic009G105400--Sobic001G264201 Sobic009G105400--Sobic009G191500 Sobic010G143600 Sobic010G143600 Sobic009G105400--Sobic010G143600 Sobic009G105400--Sobic008G068100 Sobic008G165266--Sobic005G138000 Sobic008G165300 Sobic008G165300 Sobic008G165266--Sobic008G165300 Sobic008G165266--Sobic003G434300 Sobic001G125300 Sobic001G125300 Sobic008G165266--Sobic001G125300 Sobic008G165266--Sobic006G083900 Sobic002G127900 Sobic002G127900 Sobic008G165266--Sobic002G127900 Sobic001G534200 Sobic001G534200 Sobic008G165266--Sobic001G534200 Sobic001G125400 Sobic001G125400 Sobic008G165266--Sobic001G125400 Sobic010G179300 Sobic010G179300 Sobic008G165266--Sobic010G179300
Octagon: transcription factors


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