Gene annotation
Transcriptome id Sobic.003G325900.3,Sobic.003G325900.2
Synonym Sb03g037190
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide repeat, putative, expressed
UniProt A0A120GUT1 , C5XMG5
Pfam PF13456 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF735
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G33350 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os01g58630.1 : pentatricopeptide repeat, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G325900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G078700 OsFBX411 - F-box domain containing protein, expressed -
2 Sobic.004G282500 PPR repeat domain containing protein, putative, expressed -
3 Sobic.003G184666 - -
4 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
5 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
6 Sobic.003G045450 - -
7 Sobic.008G123200 AAA-type ATPase family protein, putative, expressed -
8 Sobic.006G088820 - -
9 Sobic.003G412000 tRNA methyltransferase, putative, expressed K03256: TRM6, tRNA (adenine58-N1)-methyltransferase non-catalytic subunit
10 Sobic.005G075800 rp3 protein, putative, expressed -
11 Sobic.008G046000 expressed protein -
12 Sobic.009G154900 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ
13 Sobic.003G204100 expressed protein -
14 Sobic.001G039300 GTPase of unknown function domain containing protein, putative, expressed -
15 Sobic.009G105400 OsFBX135 - F-box domain containing protein, expressed -
16 Sobic.007G038700 zinc finger, C3HC4 type domain containing protein, expressed K11985: TRAIP, TRAF-interacting protein
17 Sobic.010G143600 ATP-binding region, ATPase-like domain containing protein, expressed -
18 Sobic.004G222150 - -
19 Sobic.010G252200 PPR repeat domain containing protein, putative, expressed -
20 Sobic.004G030600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic003G325900 Sobic003G325900 Sobic005G078700 Sobic005G078700 Sobic003G325900--Sobic005G078700 Sobic004G282500 Sobic004G282500 Sobic003G325900--Sobic004G282500 Sobic003G184666 Sobic003G184666 Sobic003G325900--Sobic003G184666 Sobic001G268300 Sobic001G268300 Sobic003G325900--Sobic001G268300 Sobic002G362200 Sobic002G362200 Sobic003G325900--Sobic002G362200 Sobic003G045450 Sobic003G045450 Sobic003G325900--Sobic003G045450 Sobic008G123200 Sobic008G123200 Sobic003G325900--Sobic008G123200 Sobic006G088820 Sobic006G088820 Sobic003G325900--Sobic006G088820 Sobic003G412000 Sobic003G412000 Sobic003G325900--Sobic003G412000 Sobic005G078700--Sobic003G325900 Sobic010G143600 Sobic010G143600 Sobic005G078700--Sobic010G143600 Sobic005G078700--Sobic003G184666 Sobic005G078700--Sobic001G268300 Sobic005G078700--Sobic002G362200 Sobic006G262800 Sobic006G262800 Sobic005G078700--Sobic006G262800 Sobic005G078700--Sobic004G282500 Sobic009G154900 Sobic009G154900 Sobic005G078700--Sobic009G154900 Sobic009G105400 Sobic009G105400 Sobic005G078700--Sobic009G105400 Sobic004G282500--Sobic001G268300 Sobic004G282500--Sobic006G262800 Sobic004G282500--Sobic003G325900 Sobic004G282500--Sobic005G078700 Sobic001G122200 Sobic001G122200 Sobic004G282500--Sobic001G122200 Sobic004G282500--Sobic009G154900 Sobic001G203600 Sobic001G203600 Sobic004G282500--Sobic001G203600 Sobic008G031200 Sobic008G031200 Sobic004G282500--Sobic008G031200 Sobic004G282500--Sobic003G412000 Sobic010G252200 Sobic010G252200 Sobic003G184666--Sobic010G252200 Sobic003G184666--Sobic005G078700 Sobic003G184666--Sobic010G143600 Sobic003G183466 Sobic003G183466 Sobic003G184666--Sobic003G183466 Sobic006G126800 Sobic006G126800 Sobic003G184666--Sobic006G126800 Sobic003G184666--Sobic003G325900 Sobic003G184666--Sobic003G045450 Sobic003G184666--Sobic002G362200 Sobic004G222150 Sobic004G222150 Sobic003G184666--Sobic004G222150 Sobic009G041800 Sobic009G041800 Sobic001G268300--Sobic009G041800 Sobic008G179000 Sobic008G179000 Sobic001G268300--Sobic008G179000 Sobic001G268300--Sobic006G262800 Sobic001G268300--Sobic002G362200 Sobic001G268300--Sobic008G031200 Sobic003G142400 Sobic003G142400 Sobic001G268300--Sobic003G142400 Sobic001G268300--Sobic010G252200 Sobic001G268300--Sobic004G282500 Sobic001G268300--Sobic005G078700 Sobic008G111600 Sobic008G111600 Sobic002G362200--Sobic008G111600 Sobic010G252700 Sobic010G252700 Sobic002G362200--Sobic010G252700 Sobic008G090000 Sobic008G090000 Sobic002G362200--Sobic008G090000 Sobic002G362200--Sobic008G179000 Sobic002G426100 Sobic002G426100 Sobic002G362200--Sobic002G426100 Sobic001G537400 Sobic001G537400 Sobic002G362200--Sobic001G537400 Sobic002G362200--Sobic001G268300 Sobic002G362200--Sobic008G031200 Sobic003G147500 Sobic003G147500 Sobic002G362200--Sobic003G147500 Sobic008G141900 Sobic008G141900 Sobic003G045450--Sobic008G141900 Sobic001G376501 Sobic001G376501 Sobic003G045450--Sobic001G376501 Sobic003G204100 Sobic003G204100 Sobic003G045450--Sobic003G204100 Sobic005G212201 Sobic005G212201 Sobic003G045450--Sobic005G212201 Sobic009G163400 Sobic009G163400 Sobic003G045450--Sobic009G163400 Sobic004G276000 Sobic004G276000 Sobic003G045450--Sobic004G276000 Sobic002G064800 Sobic002G064800 Sobic003G045450--Sobic002G064800 Sobic007G122700 Sobic007G122700 Sobic003G045450--Sobic007G122700 Sobic001G010500 Sobic001G010500 Sobic003G045450--Sobic001G010500 Sobic005G138000 Sobic005G138000 Sobic008G123200--Sobic005G138000 Sobic009G224300 Sobic009G224300 Sobic008G123200--Sobic009G224300 Sobic003G336500 Sobic003G336500 Sobic008G123200--Sobic003G336500 Sobic001G448000 Sobic001G448000 Sobic008G123200--Sobic001G448000 Sobic010G175000 Sobic010G175000 Sobic008G123200--Sobic010G175000 Sobic007G038700 Sobic007G038700 Sobic008G123200--Sobic007G038700 Sobic004G123200 Sobic004G123200 Sobic008G123200--Sobic004G123200 Sobic008G123200--Sobic009G105400 Sobic008G165266 Sobic008G165266 Sobic008G123200--Sobic008G165266 Sobic006G088820--Sobic009G105400 Sobic006G088820--Sobic010G143600 Sobic006G140400 Sobic006G140400 Sobic006G088820--Sobic006G140400 Sobic006G088820--Sobic008G123200 Sobic006G088820--Sobic005G078700 Sobic006G088820--Sobic003G325900 Sobic001G453500 Sobic001G453500 Sobic006G088820--Sobic001G453500 Sobic006G088820--Sobic003G184666 Sobic002G127900 Sobic002G127900 Sobic006G088820--Sobic002G127900 Sobic001G024000 Sobic001G024000 Sobic003G412000--Sobic001G024000 Sobic003G322200 Sobic003G322200 Sobic003G412000--Sobic003G322200 Sobic005G098000 Sobic005G098000 Sobic003G412000--Sobic005G098000 Sobic008G068100 Sobic008G068100 Sobic003G412000--Sobic008G068100 Sobic003G412000--Sobic008G111600 Sobic002G112600 Sobic002G112600 Sobic003G412000--Sobic002G112600 Sobic010G038800 Sobic010G038800 Sobic003G412000--Sobic010G038800 Sobic001G483800 Sobic001G483800 Sobic003G412000--Sobic001G483800 Sobic003G412000--Sobic009G154900
Octagon: transcription factors


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