Gene annotation
Transcriptome id Sobic.004G030600.2
Synonym Sb04g002660
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1Z5RLR7
Pfam PF01535 PF13041 PF12854
Panther DB PTHR24015 PTHR24015:SF272
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G17140 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os02g03930.1 : expressed protein
MaizeGDB (Corn) Zm00025a034999
Brachypodium KQJ93138
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G033600 pentatricopeptide, putative, expressed -
2 Sobic.008G031200 pentatricopeptide, putative, expressed -
3 Sobic.006G143200 - K14805: DDX24, ATP-dependent RNA helicase DDX24/MAK5
4 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
5 Sobic.004G027700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
6 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
7 Sobic.006G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.010G068900 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
9 Sobic.003G067201 - -
10 Sobic.003G420000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
11 Sobic.005G075800 rp3 protein, putative, expressed -
12 Sobic.002G182000 cwfJ-like family protein, putative, expressed -
13 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.006G069100 pentatricopeptide, putative, expressed -
15 Sobic.007G123100 PPR repeat domain containing protein, putative, expressed -
16 Sobic.001G039300 GTPase of unknown function domain containing protein, putative, expressed -
17 Sobic.003G325900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat, putative, expressed -
18 Sobic.008G179000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
19 Sobic.010G252700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cullin family domain containing protein, putative, expressed K03349: anaphase-promoting complex subunit 2
20 Sobic.003G130900 glucosidase II beta subunit-like domain containing protein, expressed K08288: protein kinase C substrate 80K-H


Gene co-expression network
sample Sobic004G030600 Sobic004G030600 Sobic001G033600 Sobic001G033600 Sobic004G030600--Sobic001G033600 Sobic008G031200 Sobic008G031200 Sobic004G030600--Sobic008G031200 Sobic006G143200 Sobic006G143200 Sobic004G030600--Sobic006G143200 Sobic002G362200 Sobic002G362200 Sobic004G030600--Sobic002G362200 Sobic004G027700 Sobic004G027700 Sobic004G030600--Sobic004G027700 Sobic002G084400 Sobic002G084400 Sobic004G030600--Sobic002G084400 Sobic006G085800 Sobic006G085800 Sobic004G030600--Sobic006G085800 Sobic010G068900 Sobic010G068900 Sobic004G030600--Sobic010G068900 Sobic003G067201 Sobic003G067201 Sobic004G030600--Sobic003G067201 Sobic006G095000 Sobic006G095000 Sobic001G033600--Sobic006G095000 Sobic001G033600--Sobic004G030600 Sobic003G396800 Sobic003G396800 Sobic001G033600--Sobic003G396800 Sobic002G182000 Sobic002G182000 Sobic001G033600--Sobic002G182000 Sobic002G192900 Sobic002G192900 Sobic001G033600--Sobic002G192900 Sobic003G359400 Sobic003G359400 Sobic001G033600--Sobic003G359400 Sobic001G033600--Sobic006G085800 Sobic006G262800 Sobic006G262800 Sobic001G033600--Sobic006G262800 Sobic003G184300 Sobic003G184300 Sobic001G033600--Sobic003G184300 Sobic008G179000 Sobic008G179000 Sobic008G031200--Sobic008G179000 Sobic001G268300 Sobic001G268300 Sobic008G031200--Sobic001G268300 Sobic010G252700 Sobic010G252700 Sobic008G031200--Sobic010G252700 Sobic008G031200--Sobic002G362200 Sobic003G397100 Sobic003G397100 Sobic008G031200--Sobic003G397100 Sobic003G153900 Sobic003G153900 Sobic008G031200--Sobic003G153900 Sobic008G031200--Sobic002G084400 Sobic001G537400 Sobic001G537400 Sobic008G031200--Sobic001G537400 Sobic002G123600 Sobic002G123600 Sobic008G031200--Sobic002G123600 Sobic006G143200--Sobic004G030600 Sobic001G173800 Sobic001G173800 Sobic006G143200--Sobic001G173800 Sobic003G432300 Sobic003G432300 Sobic006G143200--Sobic003G432300 Sobic006G095400 Sobic006G095400 Sobic006G143200--Sobic006G095400 Sobic001G203500 Sobic001G203500 Sobic006G143200--Sobic001G203500 Sobic010G038800 Sobic010G038800 Sobic006G143200--Sobic010G038800 Sobic001G206500 Sobic001G206500 Sobic006G143200--Sobic001G206500 Sobic009G173600 Sobic009G173600 Sobic006G143200--Sobic009G173600 Sobic006G181800 Sobic006G181800 Sobic006G143200--Sobic006G181800 Sobic008G111600 Sobic008G111600 Sobic002G362200--Sobic008G111600 Sobic002G362200--Sobic010G252700 Sobic008G090000 Sobic008G090000 Sobic002G362200--Sobic008G090000 Sobic002G362200--Sobic008G179000 Sobic002G426100 Sobic002G426100 Sobic002G362200--Sobic002G426100 Sobic002G362200--Sobic001G537400 Sobic002G362200--Sobic001G268300 Sobic002G362200--Sobic008G031200 Sobic003G147500 Sobic003G147500 Sobic002G362200--Sobic003G147500 Sobic004G027700--Sobic004G030600 Sobic003G282700 Sobic003G282700 Sobic004G027700--Sobic003G282700 Sobic004G027700--Sobic003G359400 Sobic004G027700--Sobic003G067201 Sobic006G089900 Sobic006G089900 Sobic004G027700--Sobic006G089900 Sobic004G027700--Sobic008G031200 Sobic005G034200 Sobic005G034200 Sobic004G027700--Sobic005G034200 Sobic007G039300 Sobic007G039300 Sobic004G027700--Sobic007G039300 Sobic001G039300 Sobic001G039300 Sobic004G027700--Sobic001G039300 Sobic010G232700 Sobic010G232700 Sobic002G084400--Sobic010G232700 Sobic008G041000 Sobic008G041000 Sobic002G084400--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic002G084400--Sobic006G085900 Sobic002G251800 Sobic002G251800 Sobic002G084400--Sobic002G251800 Sobic005G028300 Sobic005G028300 Sobic002G084400--Sobic005G028300 Sobic006G069100 Sobic006G069100 Sobic002G084400--Sobic006G069100 Sobic002G084400--Sobic008G031200 Sobic008G171500 Sobic008G171500 Sobic002G084400--Sobic008G171500 Sobic002G084400--Sobic003G067201 Sobic001G436600 Sobic001G436600 Sobic006G085800--Sobic001G436600 Sobic001G478900 Sobic001G478900 Sobic006G085800--Sobic001G478900 Sobic004G256900 Sobic004G256900 Sobic006G085800--Sobic004G256900 Sobic002G172500 Sobic002G172500 Sobic006G085800--Sobic002G172500 Sobic006G085800--Sobic006G085900 Sobic006G085800--Sobic010G068900 Sobic010G190900 Sobic010G190900 Sobic006G085800--Sobic010G190900 Sobic006G085800--Sobic006G262800 Sobic006G085800--Sobic006G095000 Sobic010G068900--Sobic002G172500 Sobic010G068900--Sobic004G256900 Sobic010G068900--Sobic006G262800 Sobic010G068900--Sobic010G190900 Sobic004G241000 Sobic004G241000 Sobic010G068900--Sobic004G241000 Sobic010G068900--Sobic006G069100 Sobic010G068900--Sobic006G085900 Sobic010G068900--Sobic003G184300 Sobic010G068900--Sobic001G478900 Sobic003G067201--Sobic003G397100 Sobic006G191200 Sobic006G191200 Sobic003G067201--Sobic006G191200 Sobic001G448100 Sobic001G448100 Sobic003G067201--Sobic001G448100 Sobic003G067201--Sobic003G359400 Sobic003G067201--Sobic002G084400 Sobic003G124600 Sobic003G124600 Sobic003G067201--Sobic003G124600 Sobic002G079100 Sobic002G079100 Sobic003G067201--Sobic002G079100 Sobic010G143600 Sobic010G143600 Sobic003G067201--Sobic010G143600 Sobic010G091500 Sobic010G091500 Sobic003G067201--Sobic010G091500
Octagon: transcription factors


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