Gene annotation
Transcriptome id Sobic.004G027700.2
Synonym Sb04g002445
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
tetratricopeptide-like helical, putative, expressed
UniProt A0A1Z5RL30
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF610
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G02750 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os04g35305.1 : tetratricopeptide-like helical, putative, expressed
MaizeGDB (Corn) Zm00025a018836
Brachypodium PNT65794 , PNT65793 , PNT65792
Barley HORVU6Hr1G015690.17 , HORVU6Hr1G015690.16 , HORVU6Hr1G015690.15 , HORVU6Hr1G015690.14 , HORVU6Hr1G015690.13 , HORVU6Hr1G015690.12 , HORVU6Hr1G015690.11 , HORVU6Hr1G015690.10 , HORVU6Hr1G015690.19 , HORVU6Hr1G015690.18 , HORVU6Hr1G015690.9 , HORVU6Hr1G015690.8 , HORVU6Hr1G015690.7 , HORVU6Hr1G015690.6 , HORVU6Hr1G015690.5 , HORVU6Hr1G015690.4 , HORVU6Hr1G015690.3 , HORVU6Hr1G015690.2 , HORVU6Hr1G015690.1 , HORVU6Hr1G015690.20 , HORVU6Hr1G015690.21
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G030600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.003G282700 protein kri1, putative, expressed K14786: protein KRI1
3 Sobic.003G359400 PPR repeat containing protein, expressed -
4 Sobic.003G067201 - -
5 Sobic.006G089900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
6 Sobic.008G031200 pentatricopeptide, putative, expressed -
7 Sobic.005G034200 OsFBX114 - F-box domain containing protein, expressed -
8 Sobic.007G039300 ATP-binding region, ATPase-like domain containing protein, expressed -
9 Sobic.001G039300 GTPase of unknown function domain containing protein, putative, expressed -
10 Sobic.010G252200 PPR repeat domain containing protein, putative, expressed -
11 Sobic.003G325900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat, putative, expressed -
12 Sobic.005G078700 OsFBX411 - F-box domain containing protein, expressed -
13 Sobic.001G177400 frigida, putative, expressed -
14 Sobic.007G188200 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
15 Sobic.010G143600 ATP-binding region, ATPase-like domain containing protein, expressed -
16 Sobic.001G033600 pentatricopeptide, putative, expressed -
17 Sobic.006G143200 - K14805: DDX24, ATP-dependent RNA helicase DDX24/MAK5
18 Sobic.003G184666 - -
19 Sobic.001G197100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
20 Sobic.002G312800 WD domain, G-beta repeat domain containing protein, expressed K14841: NSA1, ribosome biogenesis protein NSA1


Gene co-expression network
sample Sobic004G027700 Sobic004G027700 Sobic004G030600 Sobic004G030600 Sobic004G027700--Sobic004G030600 Sobic003G282700 Sobic003G282700 Sobic004G027700--Sobic003G282700 Sobic003G359400 Sobic003G359400 Sobic004G027700--Sobic003G359400 Sobic003G067201 Sobic003G067201 Sobic004G027700--Sobic003G067201 Sobic006G089900 Sobic006G089900 Sobic004G027700--Sobic006G089900 Sobic008G031200 Sobic008G031200 Sobic004G027700--Sobic008G031200 Sobic005G034200 Sobic005G034200 Sobic004G027700--Sobic005G034200 Sobic007G039300 Sobic007G039300 Sobic004G027700--Sobic007G039300 Sobic001G039300 Sobic001G039300 Sobic004G027700--Sobic001G039300 Sobic001G033600 Sobic001G033600 Sobic004G030600--Sobic001G033600 Sobic004G030600--Sobic008G031200 Sobic006G143200 Sobic006G143200 Sobic004G030600--Sobic006G143200 Sobic002G362200 Sobic002G362200 Sobic004G030600--Sobic002G362200 Sobic004G030600--Sobic004G027700 Sobic002G084400 Sobic002G084400 Sobic004G030600--Sobic002G084400 Sobic006G085800 Sobic006G085800 Sobic004G030600--Sobic006G085800 Sobic010G068900 Sobic010G068900 Sobic004G030600--Sobic010G068900 Sobic004G030600--Sobic003G067201 Sobic007G188200 Sobic007G188200 Sobic003G282700--Sobic007G188200 Sobic003G349000 Sobic003G349000 Sobic003G282700--Sobic003G349000 Sobic010G241600 Sobic010G241600 Sobic003G282700--Sobic010G241600 Sobic007G053700 Sobic007G053700 Sobic003G282700--Sobic007G053700 Sobic003G282700--Sobic004G027700 Sobic003G072500 Sobic003G072500 Sobic003G282700--Sobic003G072500 Sobic002G154400 Sobic002G154400 Sobic003G282700--Sobic002G154400 Sobic001G177400 Sobic001G177400 Sobic003G282700--Sobic001G177400 Sobic010G237800 Sobic010G237800 Sobic003G282700--Sobic010G237800 Sobic003G359400--Sobic003G067201 Sobic003G359400--Sobic001G033600 Sobic009G042000 Sobic009G042000 Sobic003G359400--Sobic009G042000 Sobic005G123400 Sobic005G123400 Sobic003G359400--Sobic005G123400 Sobic003G396800 Sobic003G396800 Sobic003G359400--Sobic003G396800 Sobic004G070100 Sobic004G070100 Sobic003G359400--Sobic004G070100 Sobic010G190900 Sobic010G190900 Sobic003G359400--Sobic010G190900 Sobic006G191200 Sobic006G191200 Sobic003G359400--Sobic006G191200 Sobic003G393200 Sobic003G393200 Sobic003G359400--Sobic003G393200 Sobic003G397100 Sobic003G397100 Sobic003G067201--Sobic003G397100 Sobic003G067201--Sobic006G191200 Sobic001G448100 Sobic001G448100 Sobic003G067201--Sobic001G448100 Sobic003G067201--Sobic003G359400 Sobic003G067201--Sobic002G084400 Sobic003G124600 Sobic003G124600 Sobic003G067201--Sobic003G124600 Sobic002G079100 Sobic002G079100 Sobic003G067201--Sobic002G079100 Sobic010G143600 Sobic010G143600 Sobic003G067201--Sobic010G143600 Sobic010G091500 Sobic010G091500 Sobic003G067201--Sobic010G091500 Sobic006G089900--Sobic002G084400 Sobic006G089900--Sobic008G031200 Sobic006G089900--Sobic002G362200 Sobic006G089900--Sobic004G027700 Sobic010G232700 Sobic010G232700 Sobic006G089900--Sobic010G232700 Sobic006G089900--Sobic004G030600 Sobic008G171500 Sobic008G171500 Sobic006G089900--Sobic008G171500 Sobic001G292800 Sobic001G292800 Sobic006G089900--Sobic001G292800 Sobic006G089900--Sobic003G067201 Sobic008G179000 Sobic008G179000 Sobic008G031200--Sobic008G179000 Sobic001G268300 Sobic001G268300 Sobic008G031200--Sobic001G268300 Sobic010G252700 Sobic010G252700 Sobic008G031200--Sobic010G252700 Sobic008G031200--Sobic002G362200 Sobic008G031200--Sobic003G397100 Sobic003G153900 Sobic003G153900 Sobic008G031200--Sobic003G153900 Sobic008G031200--Sobic002G084400 Sobic001G537400 Sobic001G537400 Sobic008G031200--Sobic001G537400 Sobic002G123600 Sobic002G123600 Sobic008G031200--Sobic002G123600 Sobic002G286632 Sobic002G286632 Sobic005G034200--Sobic002G286632 Sobic003G379900 Sobic003G379900 Sobic005G034200--Sobic003G379900 Sobic006G081700 Sobic006G081700 Sobic005G034200--Sobic006G081700 Sobic009G168200 Sobic009G168200 Sobic005G034200--Sobic009G168200 Sobic009G178500 Sobic009G178500 Sobic005G034200--Sobic009G178500 Sobic010G087100 Sobic010G087100 Sobic005G034200--Sobic010G087100 Sobic002G238800 Sobic002G238800 Sobic005G034200--Sobic002G238800 Sobic003G326500 Sobic003G326500 Sobic005G034200--Sobic003G326500 Sobic003G423800 Sobic003G423800 Sobic005G034200--Sobic003G423800 Sobic004G020900 Sobic004G020900 Sobic007G039300--Sobic004G020900 Sobic008G017900 Sobic008G017900 Sobic007G039300--Sobic008G017900 Sobic007G039300--Sobic002G154400 Sobic002G263700 Sobic002G263700 Sobic007G039300--Sobic002G263700 Sobic004G350200 Sobic004G350200 Sobic007G039300--Sobic004G350200 Sobic007G039300--Sobic003G124600 Sobic010G269300 Sobic010G269300 Sobic007G039300--Sobic010G269300 Sobic003G113300 Sobic003G113300 Sobic007G039300--Sobic003G113300 Sobic003G130900 Sobic003G130900 Sobic007G039300--Sobic003G130900 Sobic009G105400 Sobic009G105400 Sobic001G039300--Sobic009G105400 Sobic004G031300 Sobic004G031300 Sobic001G039300--Sobic004G031300 Sobic005G120700 Sobic005G120700 Sobic001G039300--Sobic005G120700 Sobic001G024000 Sobic001G024000 Sobic001G039300--Sobic001G024000 Sobic006G059500 Sobic006G059500 Sobic001G039300--Sobic006G059500 Sobic006G140400 Sobic006G140400 Sobic001G039300--Sobic006G140400 Sobic001G039300--Sobic010G269300 Sobic010G172400 Sobic010G172400 Sobic001G039300--Sobic010G172400 Sobic009G032200 Sobic009G032200 Sobic001G039300--Sobic009G032200
Octagon: transcription factors


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