Gene annotation
Transcriptome id Sobic.006G089900.1
Synonym Sb06g017520
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt C5Y8V3
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF417
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G08490 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os02g18810.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a056120
Brachypodium PNT61157 , PNT61156 , PNT61158 , KQJ82784
Barley HORVU2Hr1G076970.9 , HORVU2Hr1G076970.8 , HORVU2Hr1G076970.1 , HORVU2Hr1G076970.3 , HORVU2Hr1G076970.2 , HORVU2Hr1G076970.5 , HORVU2Hr1G076970.4 , HORVU2Hr1G076970.7 , HORVU2Hr1G076970.6 , HORVU2Hr1G076970.11 , HORVU2Hr1G076970.10 , HORVU2Hr1G076970.12
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
2 Sobic.008G031200 pentatricopeptide, putative, expressed -
3 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
4 Sobic.004G027700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
5 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
6 Sobic.004G030600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.008G171500 PPR repeat containing protein, expressed -
8 Sobic.001G292800 pentatricopeptide, putative, expressed -
9 Sobic.003G067201 - -
10 Sobic.003G153900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.003G359400 PPR repeat containing protein, expressed -
12 Sobic.010G252200 PPR repeat domain containing protein, putative, expressed -
13 Sobic.007G123100 PPR repeat domain containing protein, putative, expressed -
14 Sobic.006G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.009G158900 zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.010G153300 protein phosphatase 2C, putative, expressed K17679: ATP-dependent RNA helicase MSS116, mitochondrial
17 Sobic.003G392100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptidase, putative, expressed K01392: thimet oligopeptidase
18 Sobic.001G109700 expressed protein K19001: HELLS, ATP-dependent DNA helicase
19 Sobic.001G151300 pentatricopeptide, putative, expressed -
20 Sobic.006G278000 protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic006G089900 Sobic006G089900 Sobic002G084400 Sobic002G084400 Sobic006G089900--Sobic002G084400 Sobic008G031200 Sobic008G031200 Sobic006G089900--Sobic008G031200 Sobic002G362200 Sobic002G362200 Sobic006G089900--Sobic002G362200 Sobic004G027700 Sobic004G027700 Sobic006G089900--Sobic004G027700 Sobic010G232700 Sobic010G232700 Sobic006G089900--Sobic010G232700 Sobic004G030600 Sobic004G030600 Sobic006G089900--Sobic004G030600 Sobic008G171500 Sobic008G171500 Sobic006G089900--Sobic008G171500 Sobic001G292800 Sobic001G292800 Sobic006G089900--Sobic001G292800 Sobic003G067201 Sobic003G067201 Sobic006G089900--Sobic003G067201 Sobic002G084400--Sobic010G232700 Sobic008G041000 Sobic008G041000 Sobic002G084400--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic002G084400--Sobic006G085900 Sobic002G251800 Sobic002G251800 Sobic002G084400--Sobic002G251800 Sobic005G028300 Sobic005G028300 Sobic002G084400--Sobic005G028300 Sobic006G069100 Sobic006G069100 Sobic002G084400--Sobic006G069100 Sobic002G084400--Sobic008G031200 Sobic002G084400--Sobic008G171500 Sobic002G084400--Sobic003G067201 Sobic008G179000 Sobic008G179000 Sobic008G031200--Sobic008G179000 Sobic001G268300 Sobic001G268300 Sobic008G031200--Sobic001G268300 Sobic010G252700 Sobic010G252700 Sobic008G031200--Sobic010G252700 Sobic008G031200--Sobic002G362200 Sobic003G397100 Sobic003G397100 Sobic008G031200--Sobic003G397100 Sobic003G153900 Sobic003G153900 Sobic008G031200--Sobic003G153900 Sobic008G031200--Sobic002G084400 Sobic001G537400 Sobic001G537400 Sobic008G031200--Sobic001G537400 Sobic002G123600 Sobic002G123600 Sobic008G031200--Sobic002G123600 Sobic008G111600 Sobic008G111600 Sobic002G362200--Sobic008G111600 Sobic002G362200--Sobic010G252700 Sobic008G090000 Sobic008G090000 Sobic002G362200--Sobic008G090000 Sobic002G362200--Sobic008G179000 Sobic002G426100 Sobic002G426100 Sobic002G362200--Sobic002G426100 Sobic002G362200--Sobic001G537400 Sobic002G362200--Sobic001G268300 Sobic002G362200--Sobic008G031200 Sobic003G147500 Sobic003G147500 Sobic002G362200--Sobic003G147500 Sobic004G027700--Sobic004G030600 Sobic003G282700 Sobic003G282700 Sobic004G027700--Sobic003G282700 Sobic003G359400 Sobic003G359400 Sobic004G027700--Sobic003G359400 Sobic004G027700--Sobic003G067201 Sobic004G027700--Sobic006G089900 Sobic004G027700--Sobic008G031200 Sobic005G034200 Sobic005G034200 Sobic004G027700--Sobic005G034200 Sobic007G039300 Sobic007G039300 Sobic004G027700--Sobic007G039300 Sobic001G039300 Sobic001G039300 Sobic004G027700--Sobic001G039300 Sobic010G232700--Sobic002G084400 Sobic010G232700--Sobic008G041000 Sobic010G232700--Sobic006G085900 Sobic010G232700--Sobic008G171500 Sobic003G203100 Sobic003G203100 Sobic010G232700--Sobic003G203100 Sobic004G241000 Sobic004G241000 Sobic010G232700--Sobic004G241000 Sobic010G232700--Sobic006G069100 Sobic010G232700--Sobic005G028300 Sobic004G256900 Sobic004G256900 Sobic010G232700--Sobic004G256900 Sobic001G033600 Sobic001G033600 Sobic004G030600--Sobic001G033600 Sobic004G030600--Sobic008G031200 Sobic006G143200 Sobic006G143200 Sobic004G030600--Sobic006G143200 Sobic004G030600--Sobic002G362200 Sobic004G030600--Sobic004G027700 Sobic004G030600--Sobic002G084400 Sobic006G085800 Sobic006G085800 Sobic004G030600--Sobic006G085800 Sobic010G068900 Sobic010G068900 Sobic004G030600--Sobic010G068900 Sobic004G030600--Sobic003G067201 Sobic008G171500--Sobic004G256900 Sobic008G171500--Sobic002G084400 Sobic008G171500--Sobic002G362200 Sobic008G171500--Sobic010G232700 Sobic008G171500--Sobic008G031200 Sobic002G172500 Sobic002G172500 Sobic008G171500--Sobic002G172500 Sobic008G171500--Sobic004G241000 Sobic003G184300 Sobic003G184300 Sobic008G171500--Sobic003G184300 Sobic008G171500--Sobic006G069100 Sobic001G292800--Sobic006G085800 Sobic004G215600 Sobic004G215600 Sobic001G292800--Sobic004G215600 Sobic001G292800--Sobic008G031200 Sobic001G292800--Sobic001G268300 Sobic001G292800--Sobic002G362200 Sobic001G292800--Sobic003G359400 Sobic003G392100 Sobic003G392100 Sobic001G292800--Sobic003G392100 Sobic003G142400 Sobic003G142400 Sobic001G292800--Sobic003G142400 Sobic006G095000 Sobic006G095000 Sobic001G292800--Sobic006G095000 Sobic003G067201--Sobic003G397100 Sobic006G191200 Sobic006G191200 Sobic003G067201--Sobic006G191200 Sobic001G448100 Sobic001G448100 Sobic003G067201--Sobic001G448100 Sobic003G067201--Sobic003G359400 Sobic003G067201--Sobic002G084400 Sobic003G124600 Sobic003G124600 Sobic003G067201--Sobic003G124600 Sobic002G079100 Sobic002G079100 Sobic003G067201--Sobic002G079100 Sobic010G143600 Sobic010G143600 Sobic003G067201--Sobic010G143600 Sobic010G091500 Sobic010G091500 Sobic003G067201--Sobic010G091500
Octagon: transcription factors


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