Gene annotation
Transcriptome id Sobic.009G158900.1
Synonym Sb09g022180
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5YYW9
Pfam PF12906
Panther DB PTHR23012 PTHR23012:SF72
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G05830 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os05g37900.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035364 , Zm00025a043874 , Zm00025a026841 , Zm00025a039161 , Zm00025a033313
Brachypodium KQK05961 , KQK05960
Barley HORVU1Hr1G073050.1
Wheat TraesCS1D02G279400 , TraesCS1B02G289200 , TraesCS1A02G280300
Populus -


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cDNA sequences
Sobic.009G158900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G336900 inactive receptor kinase At2g26730 precursor, putative, expressed -
2 Sobic.009G024900 CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
3 Sobic.002G390800 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
4 Sobic.008G169400 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed -
5 Sobic.006G193100 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
6 Sobic.002G173400 expressed protein -
7 Sobic.004G063600 CYPRO4, putative, expressed -
8 Sobic.007G221700 expressed protein -
9 Sobic.001G079900 expressed protein -
10 Sobic.003G411700 heat shock protein DnaJ, putative, expressed -
11 Sobic.009G058100 FHA domain containing protein, putative, expressed -
12 Sobic.002G293700 ATXR, putative, expressed -
13 Sobic.003G307200 expressed protein -
14 Sobic.008G131900 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@resistance protein LR10, putative, expressed -
15 Sobic.002G052800 FAR1 family protein, expressed -
16 Sobic.002G204400 kinesin motor protein-related, putative, expressed K11498: centromeric protein E
17 Sobic.003G315700 AAA-type ATPase family protein, putative, expressed -
18 Sobic.001G008300 expressed protein -
19 Sobic.002G370400 expressed protein -
20 Sobic.009G131200 expressed protein -


Gene co-expression network
sample Sobic009G158900 Sobic009G158900 Sobic003G336900 Sobic003G336900 Sobic009G158900--Sobic003G336900 Sobic009G024900 Sobic009G024900 Sobic009G158900--Sobic009G024900 Sobic002G390800 Sobic002G390800 Sobic009G158900--Sobic002G390800 Sobic008G169400 Sobic008G169400 Sobic009G158900--Sobic008G169400 Sobic006G193100 Sobic006G193100 Sobic009G158900--Sobic006G193100 Sobic002G173400 Sobic002G173400 Sobic009G158900--Sobic002G173400 Sobic004G063600 Sobic004G063600 Sobic009G158900--Sobic004G063600 Sobic007G221700 Sobic007G221700 Sobic009G158900--Sobic007G221700 Sobic001G079900 Sobic001G079900 Sobic009G158900--Sobic001G079900 Sobic003G336900--Sobic009G158900 Sobic003G336900--Sobic009G024900 Sobic003G336900--Sobic006G193100 Sobic008G131900 Sobic008G131900 Sobic003G336900--Sobic008G131900 Sobic010G024000 Sobic010G024000 Sobic003G336900--Sobic010G024000 Sobic003G336900--Sobic002G173400 Sobic009G175100 Sobic009G175100 Sobic003G336900--Sobic009G175100 Sobic008G004900 Sobic008G004900 Sobic003G336900--Sobic008G004900 Sobic001G026800 Sobic001G026800 Sobic003G336900--Sobic001G026800 Sobic009G024900--Sobic009G158900 Sobic009G024900--Sobic003G336900 Sobic009G024900--Sobic002G390800 Sobic009G024900--Sobic002G173400 Sobic009G024900--Sobic008G131900 Sobic009G131200 Sobic009G131200 Sobic009G024900--Sobic009G131200 Sobic003G285700 Sobic003G285700 Sobic009G024900--Sobic003G285700 Sobic001G327100 Sobic001G327100 Sobic009G024900--Sobic001G327100 Sobic003G045000 Sobic003G045000 Sobic009G024900--Sobic003G045000 Sobic001G082800 Sobic001G082800 Sobic002G390800--Sobic001G082800 Sobic007G102000 Sobic007G102000 Sobic002G390800--Sobic007G102000 Sobic009G125800 Sobic009G125800 Sobic002G390800--Sobic009G125800 Sobic008G047500 Sobic008G047500 Sobic002G390800--Sobic008G047500 Sobic002G192900 Sobic002G192900 Sobic002G390800--Sobic002G192900 Sobic009G136000 Sobic009G136000 Sobic002G390800--Sobic009G136000 Sobic002G390800--Sobic008G004900 Sobic001G248400 Sobic001G248400 Sobic002G390800--Sobic001G248400 Sobic010G038200 Sobic010G038200 Sobic002G390800--Sobic010G038200 Sobic008G169400--Sobic001G079900 Sobic003G153900 Sobic003G153900 Sobic008G169400--Sobic003G153900 Sobic007G031300 Sobic007G031300 Sobic008G169400--Sobic007G031300 Sobic009G141700 Sobic009G141700 Sobic008G169400--Sobic009G141700 Sobic002G370400 Sobic002G370400 Sobic008G169400--Sobic002G370400 Sobic001G494100 Sobic001G494100 Sobic008G169400--Sobic001G494100 Sobic002G293700 Sobic002G293700 Sobic008G169400--Sobic002G293700 Sobic008G169400--Sobic009G158900 Sobic003G397100 Sobic003G397100 Sobic008G169400--Sobic003G397100 Sobic003G031700 Sobic003G031700 Sobic006G193100--Sobic003G031700 Sobic001G008300 Sobic001G008300 Sobic006G193100--Sobic001G008300 Sobic009G202801 Sobic009G202801 Sobic006G193100--Sobic009G202801 Sobic003G315700 Sobic003G315700 Sobic006G193100--Sobic003G315700 Sobic004G328300 Sobic004G328300 Sobic006G193100--Sobic004G328300 Sobic008G148000 Sobic008G148000 Sobic006G193100--Sobic008G148000 Sobic002G319300 Sobic002G319300 Sobic006G193100--Sobic002G319300 Sobic006G193100--Sobic009G136000 Sobic002G204400 Sobic002G204400 Sobic006G193100--Sobic002G204400 Sobic002G173400--Sobic008G131900 Sobic009G120400 Sobic009G120400 Sobic002G173400--Sobic009G120400 Sobic003G194800 Sobic003G194800 Sobic002G173400--Sobic003G194800 Sobic002G173400--Sobic008G047500 Sobic002G052800 Sobic002G052800 Sobic002G173400--Sobic002G052800 Sobic002G173400--Sobic010G038200 Sobic010G143600 Sobic010G143600 Sobic002G173400--Sobic010G143600 Sobic004G000400 Sobic004G000400 Sobic002G173400--Sobic004G000400 Sobic005G060100 Sobic005G060100 Sobic002G173400--Sobic005G060100 Sobic009G058100 Sobic009G058100 Sobic004G063600--Sobic009G058100 Sobic003G260700 Sobic003G260700 Sobic004G063600--Sobic003G260700 Sobic004G063600--Sobic002G204400 Sobic003G084100 Sobic003G084100 Sobic004G063600--Sobic003G084100 Sobic010G105400 Sobic010G105400 Sobic004G063600--Sobic010G105400 Sobic004G063600--Sobic009G131200 Sobic004G198100 Sobic004G198100 Sobic004G063600--Sobic004G198100 Sobic001G398400 Sobic001G398400 Sobic004G063600--Sobic001G398400 Sobic001G091500 Sobic001G091500 Sobic004G063600--Sobic001G091500 Sobic007G221700--Sobic002G204400 Sobic004G306100 Sobic004G306100 Sobic007G221700--Sobic004G306100 Sobic003G393100 Sobic003G393100 Sobic007G221700--Sobic003G393100 Sobic002G271400 Sobic002G271400 Sobic007G221700--Sobic002G271400 Sobic002G021200 Sobic002G021200 Sobic007G221700--Sobic002G021200 Sobic007G221700--Sobic003G315700 Sobic007G221700--Sobic002G173400 Sobic003G411700 Sobic003G411700 Sobic007G221700--Sobic003G411700 Sobic007G221700--Sobic008G148000 Sobic005G032600 Sobic005G032600 Sobic001G079900--Sobic005G032600 Sobic001G384700 Sobic001G384700 Sobic001G079900--Sobic001G384700 Sobic005G062600 Sobic005G062600 Sobic001G079900--Sobic005G062600 Sobic002G050700 Sobic002G050700 Sobic001G079900--Sobic002G050700 Sobic003G351900 Sobic003G351900 Sobic001G079900--Sobic003G351900 Sobic001G493900 Sobic001G493900 Sobic001G079900--Sobic001G493900 Sobic008G151600 Sobic008G151600 Sobic001G079900--Sobic008G151600 Sobic002G027600 Sobic002G027600 Sobic001G079900--Sobic002G027600 Sobic001G079900--Sobic009G141700
Octagon: transcription factors


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