Gene annotation
Transcriptome id Sobic.001G292800.1
Synonym Sb01g028590
Functional annotation pentatricopeptide, putative, expressed
UniProt C5WRF0
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF444
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G21090 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os10g41740.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a003434
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.004G215600 - K15271: HFM1, ATP-dependent DNA helicase HFM1/MER3
3 Sobic.008G031200 pentatricopeptide, putative, expressed -
4 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
5 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
6 Sobic.003G359400 PPR repeat containing protein, expressed -
7 Sobic.003G392100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptidase, putative, expressed K01392: thimet oligopeptidase
8 Sobic.003G142400 pentatricopeptide, putative, expressed -
9 Sobic.006G095000 PPR repeat domain containing protein, putative, expressed -
10 Sobic.008G179000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.001G436600 pentatricopeptide, putative, expressed -
12 Sobic.003G325900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat, putative, expressed -
13 Sobic.006G089900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.004G000400 OsPDIL1-4 protein disulfide isomerase PDIL1-4, expressed K09580: PDIA1, protein disulfide-isomerase A1
15 Sobic.003G235700 single-stranded DNA-binding protein, putative, expressed K03111: single-strand DNA-binding protein
16 Sobic.004G070100 exostosin family domain containing protein, expressed -
17 Sobic.010G252200 PPR repeat domain containing protein, putative, expressed -
18 Sobic.010G068900 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
19 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
20 Sobic.008G171500 PPR repeat containing protein, expressed -


Gene co-expression network
sample Sobic001G292800 Sobic001G292800 Sobic006G085800 Sobic006G085800 Sobic001G292800--Sobic006G085800 Sobic004G215600 Sobic004G215600 Sobic001G292800--Sobic004G215600 Sobic008G031200 Sobic008G031200 Sobic001G292800--Sobic008G031200 Sobic001G268300 Sobic001G268300 Sobic001G292800--Sobic001G268300 Sobic002G362200 Sobic002G362200 Sobic001G292800--Sobic002G362200 Sobic003G359400 Sobic003G359400 Sobic001G292800--Sobic003G359400 Sobic003G392100 Sobic003G392100 Sobic001G292800--Sobic003G392100 Sobic003G142400 Sobic003G142400 Sobic001G292800--Sobic003G142400 Sobic006G095000 Sobic006G095000 Sobic001G292800--Sobic006G095000 Sobic001G436600 Sobic001G436600 Sobic006G085800--Sobic001G436600 Sobic001G478900 Sobic001G478900 Sobic006G085800--Sobic001G478900 Sobic004G256900 Sobic004G256900 Sobic006G085800--Sobic004G256900 Sobic002G172500 Sobic002G172500 Sobic006G085800--Sobic002G172500 Sobic006G085900 Sobic006G085900 Sobic006G085800--Sobic006G085900 Sobic010G068900 Sobic010G068900 Sobic006G085800--Sobic010G068900 Sobic010G190900 Sobic010G190900 Sobic006G085800--Sobic010G190900 Sobic006G262800 Sobic006G262800 Sobic006G085800--Sobic006G262800 Sobic006G085800--Sobic006G095000 Sobic009G120400 Sobic009G120400 Sobic004G215600--Sobic009G120400 Sobic003G194800 Sobic003G194800 Sobic004G215600--Sobic003G194800 Sobic008G047500 Sobic008G047500 Sobic004G215600--Sobic008G047500 Sobic007G186400 Sobic007G186400 Sobic004G215600--Sobic007G186400 Sobic008G095900 Sobic008G095900 Sobic004G215600--Sobic008G095900 Sobic004G215600--Sobic006G095000 Sobic008G085950 Sobic008G085950 Sobic004G215600--Sobic008G085950 Sobic002G173400 Sobic002G173400 Sobic004G215600--Sobic002G173400 Sobic001G043200 Sobic001G043200 Sobic004G215600--Sobic001G043200 Sobic008G179000 Sobic008G179000 Sobic008G031200--Sobic008G179000 Sobic008G031200--Sobic001G268300 Sobic010G252700 Sobic010G252700 Sobic008G031200--Sobic010G252700 Sobic008G031200--Sobic002G362200 Sobic003G397100 Sobic003G397100 Sobic008G031200--Sobic003G397100 Sobic003G153900 Sobic003G153900 Sobic008G031200--Sobic003G153900 Sobic002G084400 Sobic002G084400 Sobic008G031200--Sobic002G084400 Sobic001G537400 Sobic001G537400 Sobic008G031200--Sobic001G537400 Sobic002G123600 Sobic002G123600 Sobic008G031200--Sobic002G123600 Sobic009G041800 Sobic009G041800 Sobic001G268300--Sobic009G041800 Sobic001G268300--Sobic008G179000 Sobic001G268300--Sobic006G262800 Sobic001G268300--Sobic002G362200 Sobic001G268300--Sobic008G031200 Sobic001G268300--Sobic003G142400 Sobic010G252200 Sobic010G252200 Sobic001G268300--Sobic010G252200 Sobic004G282500 Sobic004G282500 Sobic001G268300--Sobic004G282500 Sobic005G078700 Sobic005G078700 Sobic001G268300--Sobic005G078700 Sobic008G111600 Sobic008G111600 Sobic002G362200--Sobic008G111600 Sobic002G362200--Sobic010G252700 Sobic008G090000 Sobic008G090000 Sobic002G362200--Sobic008G090000 Sobic002G362200--Sobic008G179000 Sobic002G426100 Sobic002G426100 Sobic002G362200--Sobic002G426100 Sobic002G362200--Sobic001G537400 Sobic002G362200--Sobic001G268300 Sobic002G362200--Sobic008G031200 Sobic003G147500 Sobic003G147500 Sobic002G362200--Sobic003G147500 Sobic003G067201 Sobic003G067201 Sobic003G359400--Sobic003G067201 Sobic001G033600 Sobic001G033600 Sobic003G359400--Sobic001G033600 Sobic009G042000 Sobic009G042000 Sobic003G359400--Sobic009G042000 Sobic005G123400 Sobic005G123400 Sobic003G359400--Sobic005G123400 Sobic003G396800 Sobic003G396800 Sobic003G359400--Sobic003G396800 Sobic004G070100 Sobic004G070100 Sobic003G359400--Sobic004G070100 Sobic003G359400--Sobic010G190900 Sobic006G191200 Sobic006G191200 Sobic003G359400--Sobic006G191200 Sobic003G393200 Sobic003G393200 Sobic003G359400--Sobic003G393200 Sobic006G127200 Sobic006G127200 Sobic003G392100--Sobic006G127200 Sobic003G392100--Sobic002G426100 Sobic002G095300 Sobic002G095300 Sobic003G392100--Sobic002G095300 Sobic003G392100--Sobic002G123600 Sobic003G144000 Sobic003G144000 Sobic003G392100--Sobic003G144000 Sobic001G199500 Sobic001G199500 Sobic003G392100--Sobic001G199500 Sobic003G392100--Sobic009G120400 Sobic010G143600 Sobic010G143600 Sobic003G392100--Sobic010G143600 Sobic003G204100 Sobic003G204100 Sobic003G392100--Sobic003G204100 Sobic003G142400--Sobic001G268300 Sobic003G142400--Sobic006G262800 Sobic003G142400--Sobic010G068900 Sobic003G142400--Sobic001G478900 Sobic003G184300 Sobic003G184300 Sobic003G142400--Sobic003G184300 Sobic008G163400 Sobic008G163400 Sobic003G142400--Sobic008G163400 Sobic004G241000 Sobic004G241000 Sobic003G142400--Sobic004G241000 Sobic003G142400--Sobic008G179000 Sobic003G142400--Sobic009G041800 Sobic006G095000--Sobic003G184300 Sobic002G192900 Sobic002G192900 Sobic006G095000--Sobic002G192900 Sobic004G064600 Sobic004G064600 Sobic006G095000--Sobic004G064600 Sobic006G095000--Sobic008G047500 Sobic006G095000--Sobic004G215600 Sobic001G323400 Sobic001G323400 Sobic006G095000--Sobic001G323400 Sobic002G308000 Sobic002G308000 Sobic006G095000--Sobic002G308000 Sobic003G045000 Sobic003G045000 Sobic006G095000--Sobic003G045000 Sobic006G095000--Sobic009G120400
Octagon: transcription factors


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