Gene annotation
Transcriptome id Sobic.003G392100.1
Synonym Sb03g042960
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
oligopeptidase, putative, expressed
UniProt A0A1B6Q7P9
Pfam PF01432
Panther DB PTHR11804 PTHR11804:SF40
NCBI CDD -
KEGG Orthology K01392; thimet oligopeptidase
Gene Ontology GO:0006508; proteolysis GO:0004222metalloendopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G67690 : Zincin-like metalloproteases family protein
RAP-DB (Rice) LOC_Os01g67590.1 : oligopeptidase, putative, expressed
MaizeGDB (Corn) Zm00025a026392
Brachypodium KQK11067
Barley HORVU3Hr1G088910.3 , HORVU3Hr1G088910.2 , HORVU3Hr1G088910.7 , HORVU3Hr1G088910.6 , HORVU3Hr1G088910.5 , HORVU3Hr1G088910.4 , HORVU3Hr1G088910.9 , HORVU3Hr1G088910.8 , HORVU3Hr1G088910.13 , HORVU3Hr1G088910.12 , HORVU3Hr1G088910.11 , HORVU3Hr1G088910.10 , HORVU3Hr1G088910.14
Wheat TraesCS3D02G386400 , TraesCS3B02G425400 , TraesCS3A02G393400
Populus -


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cDNA sequences
Sobic.003G392100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G127200 kelch repeat protein, putative, expressed -
2 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
3 Sobic.002G095300 deoxynucleoside kinase family, putative, expressed K00893: deoxycitidine kinase
4 Sobic.002G123600 expressed protein -
5 Sobic.003G144000 pentatricopeptide, putative, expressed -
6 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
7 Sobic.009G120400 methyltransferase, putative, expressed -
8 Sobic.010G143600 ATP-binding region, ATPase-like domain containing protein, expressed -
9 Sobic.003G204100 expressed protein -
10 Sobic.002G078100 PPR repeat domain containing protein, putative, expressed -
11 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
12 Sobic.001G486600 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
13 Sobic.008G059900 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
14 Sobic.001G200200 tetratricopeptide repeat, putative, expressed -
15 Sobic.003G028400 OsFBX234 - F-box domain containing protein, expressed -
16 Sobic.002G187600 expressed protein -
17 Sobic.001G537400 MYB family transcription factor, putative, expressed -
18 Sobic.002G043000 HEN1, putative, expressed -
19 Sobic.006G126800 expressed protein K10730: ATP-dependent DNA helicase Q4
20 Sobic.007G219100 phosphatidylinositol transfer, putative, expressed -


Gene co-expression network
sample Sobic003G392100 Sobic003G392100 Sobic006G127200 Sobic006G127200 Sobic003G392100--Sobic006G127200 Sobic002G426100 Sobic002G426100 Sobic003G392100--Sobic002G426100 Sobic002G095300 Sobic002G095300 Sobic003G392100--Sobic002G095300 Sobic002G123600 Sobic002G123600 Sobic003G392100--Sobic002G123600 Sobic003G144000 Sobic003G144000 Sobic003G392100--Sobic003G144000 Sobic001G199500 Sobic001G199500 Sobic003G392100--Sobic001G199500 Sobic009G120400 Sobic009G120400 Sobic003G392100--Sobic009G120400 Sobic010G143600 Sobic010G143600 Sobic003G392100--Sobic010G143600 Sobic003G204100 Sobic003G204100 Sobic003G392100--Sobic003G204100 Sobic004G306100 Sobic004G306100 Sobic006G127200--Sobic004G306100 Sobic002G271400 Sobic002G271400 Sobic006G127200--Sobic002G271400 Sobic010G257500 Sobic010G257500 Sobic006G127200--Sobic010G257500 Sobic006G127200--Sobic002G123600 Sobic003G409600 Sobic003G409600 Sobic006G127200--Sobic003G409600 Sobic003G226700 Sobic003G226700 Sobic006G127200--Sobic003G226700 Sobic009G081800 Sobic009G081800 Sobic006G127200--Sobic009G081800 Sobic010G103500 Sobic010G103500 Sobic006G127200--Sobic010G103500 Sobic001G025900 Sobic001G025900 Sobic006G127200--Sobic001G025900 Sobic002G426100--Sobic009G120400 Sobic008G111600 Sobic008G111600 Sobic002G426100--Sobic008G111600 Sobic006G181800 Sobic006G181800 Sobic002G426100--Sobic006G181800 Sobic002G078100 Sobic002G078100 Sobic002G426100--Sobic002G078100 Sobic002G043000 Sobic002G043000 Sobic002G426100--Sobic002G043000 Sobic006G017800 Sobic006G017800 Sobic002G426100--Sobic006G017800 Sobic002G066800 Sobic002G066800 Sobic002G426100--Sobic002G066800 Sobic007G186400 Sobic007G186400 Sobic002G426100--Sobic007G186400 Sobic004G129500 Sobic004G129500 Sobic002G426100--Sobic004G129500 Sobic002G187600 Sobic002G187600 Sobic002G095300--Sobic002G187600 Sobic010G087100 Sobic010G087100 Sobic002G095300--Sobic010G087100 Sobic002G021200 Sobic002G021200 Sobic002G095300--Sobic002G021200 Sobic002G095300--Sobic002G123600 Sobic007G187700 Sobic007G187700 Sobic002G095300--Sobic007G187700 Sobic008G118100 Sobic008G118100 Sobic002G095300--Sobic008G118100 Sobic008G090400 Sobic008G090400 Sobic002G095300--Sobic008G090400 Sobic002G168000 Sobic002G168000 Sobic002G095300--Sobic002G168000 Sobic006G126800 Sobic006G126800 Sobic002G095300--Sobic006G126800 Sobic002G123600--Sobic006G127200 Sobic002G123600--Sobic008G090400 Sobic002G123600--Sobic004G306100 Sobic002G123600--Sobic002G095300 Sobic002G123600--Sobic002G271400 Sobic003G397100 Sobic003G397100 Sobic002G123600--Sobic003G397100 Sobic001G242300 Sobic001G242300 Sobic002G123600--Sobic001G242300 Sobic003G411700 Sobic003G411700 Sobic002G123600--Sobic003G411700 Sobic002G123600--Sobic004G129500 Sobic005G088900 Sobic005G088900 Sobic003G144000--Sobic005G088900 Sobic003G144000--Sobic001G199500 Sobic010G038800 Sobic010G038800 Sobic003G144000--Sobic010G038800 Sobic003G144000--Sobic008G111600 Sobic003G432300 Sobic003G432300 Sobic003G144000--Sobic003G432300 Sobic005G098000 Sobic005G098000 Sobic003G144000--Sobic005G098000 Sobic004G082700 Sobic004G082700 Sobic003G144000--Sobic004G082700 Sobic003G144000--Sobic006G181800 Sobic001G200200 Sobic001G200200 Sobic003G144000--Sobic001G200200 Sobic001G199500--Sobic005G088900 Sobic003G102700 Sobic003G102700 Sobic001G199500--Sobic003G102700 Sobic006G084300 Sobic006G084300 Sobic001G199500--Sobic006G084300 Sobic003G024000 Sobic003G024000 Sobic001G199500--Sobic003G024000 Sobic006G281900 Sobic006G281900 Sobic001G199500--Sobic006G281900 Sobic009G188900 Sobic009G188900 Sobic001G199500--Sobic009G188900 Sobic007G006800 Sobic007G006800 Sobic001G199500--Sobic007G006800 Sobic006G071628 Sobic006G071628 Sobic001G199500--Sobic006G071628 Sobic001G199500--Sobic003G144000 Sobic002G173400 Sobic002G173400 Sobic009G120400--Sobic002G173400 Sobic009G120400--Sobic002G426100 Sobic007G034200 Sobic007G034200 Sobic009G120400--Sobic007G034200 Sobic003G194800 Sobic003G194800 Sobic009G120400--Sobic003G194800 Sobic004G215600 Sobic004G215600 Sobic009G120400--Sobic004G215600 Sobic007G105700 Sobic007G105700 Sobic009G120400--Sobic007G105700 Sobic003G299500 Sobic003G299500 Sobic009G120400--Sobic003G299500 Sobic009G120400--Sobic007G186400 Sobic001G051400 Sobic001G051400 Sobic009G120400--Sobic001G051400 Sobic005G078700 Sobic005G078700 Sobic010G143600--Sobic005G078700 Sobic010G143600--Sobic002G173400 Sobic010G143600--Sobic003G194800 Sobic010G143600--Sobic009G120400 Sobic003G183466 Sobic003G183466 Sobic010G143600--Sobic003G183466 Sobic010G143600--Sobic003G204100 Sobic006G008300 Sobic006G008300 Sobic010G143600--Sobic006G008300 Sobic010G143600--Sobic003G397100 Sobic003G184666 Sobic003G184666 Sobic010G143600--Sobic003G184666 Sobic008G047500 Sobic008G047500 Sobic003G204100--Sobic008G047500 Sobic003G204100--Sobic003G194800 Sobic003G045450 Sobic003G045450 Sobic003G204100--Sobic003G045450 Sobic004G298600 Sobic004G298600 Sobic003G204100--Sobic004G298600 Sobic008G085950 Sobic008G085950 Sobic003G204100--Sobic008G085950 Sobic003G204100--Sobic002G173400 Sobic003G204100--Sobic010G143600 Sobic001G117900 Sobic001G117900 Sobic003G204100--Sobic001G117900 Sobic007G102000 Sobic007G102000 Sobic003G204100--Sobic007G102000
Octagon: transcription factors


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