Gene annotation
Transcriptome id Sobic.003G067201.1
Synonym -
Functional annotation -
UniProt A0A1W0VW11
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF495
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G59900 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os01g06000.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a023402
Brachypodium KQK02280
Barley HORVU3Hr1G104500.17 , HORVU3Hr1G104500.16 , HORVU3Hr1G104500.15 , HORVU3Hr1G104500.11 , HORVU3Hr1G104500.10 , HORVU3Hr1G104500.19 , HORVU3Hr1G104500.18 , HORVU3Hr1G104500.12 , HORVU3Hr1G104500.9 , HORVU3Hr1G104500.8 , HORVU3Hr1G104500.7 , HORVU3Hr1G104500.6 , HORVU3Hr1G104500.5 , HORVU3Hr1G104500.4 , HORVU3Hr1G104500.3 , HORVU3Hr1G104500.2 , HORVU3Hr1G104500.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G397100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
2 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
3 Sobic.001G448100 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
4 Sobic.003G359400 PPR repeat containing protein, expressed -
5 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
6 Sobic.003G124600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
7 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
8 Sobic.010G143600 ATP-binding region, ATPase-like domain containing protein, expressed -
9 Sobic.010G091500 pentatricopeptide, putative, expressed -
10 Sobic.008G031200 pentatricopeptide, putative, expressed -
11 Sobic.001G453500 expressed protein -
12 Sobic.002G380100 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
13 Sobic.003G420000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
14 Sobic.001G187800 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
15 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
16 Sobic.001G049800 DDT domain containing protein, putative, expressed -
17 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
18 Sobic.001G242300 expressed protein -
19 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
20 Sobic.001G436600 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic003G067201 Sobic003G067201 Sobic003G397100 Sobic003G397100 Sobic003G067201--Sobic003G397100 Sobic006G191200 Sobic006G191200 Sobic003G067201--Sobic006G191200 Sobic001G448100 Sobic001G448100 Sobic003G067201--Sobic001G448100 Sobic003G359400 Sobic003G359400 Sobic003G067201--Sobic003G359400 Sobic002G084400 Sobic002G084400 Sobic003G067201--Sobic002G084400 Sobic003G124600 Sobic003G124600 Sobic003G067201--Sobic003G124600 Sobic002G079100 Sobic002G079100 Sobic003G067201--Sobic002G079100 Sobic010G143600 Sobic010G143600 Sobic003G067201--Sobic010G143600 Sobic010G091500 Sobic010G091500 Sobic003G067201--Sobic010G091500 Sobic001G242300 Sobic001G242300 Sobic003G397100--Sobic001G242300 Sobic002G123600 Sobic002G123600 Sobic003G397100--Sobic002G123600 Sobic002G260700 Sobic002G260700 Sobic003G397100--Sobic002G260700 Sobic008G090300 Sobic008G090300 Sobic003G397100--Sobic008G090300 Sobic008G169400 Sobic008G169400 Sobic003G397100--Sobic008G169400 Sobic008G112100 Sobic008G112100 Sobic003G397100--Sobic008G112100 Sobic003G397100--Sobic010G143600 Sobic003G397100--Sobic001G448100 Sobic008G031200 Sobic008G031200 Sobic003G397100--Sobic008G031200 Sobic001G123600 Sobic001G123600 Sobic006G191200--Sobic001G123600 Sobic002G296400 Sobic002G296400 Sobic006G191200--Sobic002G296400 Sobic001G051400 Sobic001G051400 Sobic006G191200--Sobic001G051400 Sobic002G078100 Sobic002G078100 Sobic006G191200--Sobic002G078100 Sobic002G066800 Sobic002G066800 Sobic006G191200--Sobic002G066800 Sobic003G299500 Sobic003G299500 Sobic006G191200--Sobic003G299500 Sobic002G386900 Sobic002G386900 Sobic006G191200--Sobic002G386900 Sobic009G120400 Sobic009G120400 Sobic006G191200--Sobic009G120400 Sobic004G097900 Sobic004G097900 Sobic006G191200--Sobic004G097900 Sobic001G448100--Sobic002G079100 Sobic001G448100--Sobic003G397100 Sobic004G007900 Sobic004G007900 Sobic001G448100--Sobic004G007900 Sobic002G235900 Sobic002G235900 Sobic001G448100--Sobic002G235900 Sobic002G380100 Sobic002G380100 Sobic001G448100--Sobic002G380100 Sobic009G154900 Sobic009G154900 Sobic001G448100--Sobic009G154900 Sobic001G522400 Sobic001G522400 Sobic001G448100--Sobic001G522400 Sobic009G000400 Sobic009G000400 Sobic001G448100--Sobic009G000400 Sobic001G448100--Sobic003G067201 Sobic003G359400--Sobic003G067201 Sobic001G033600 Sobic001G033600 Sobic003G359400--Sobic001G033600 Sobic009G042000 Sobic009G042000 Sobic003G359400--Sobic009G042000 Sobic005G123400 Sobic005G123400 Sobic003G359400--Sobic005G123400 Sobic003G396800 Sobic003G396800 Sobic003G359400--Sobic003G396800 Sobic004G070100 Sobic004G070100 Sobic003G359400--Sobic004G070100 Sobic010G190900 Sobic010G190900 Sobic003G359400--Sobic010G190900 Sobic003G359400--Sobic006G191200 Sobic003G393200 Sobic003G393200 Sobic003G359400--Sobic003G393200 Sobic010G232700 Sobic010G232700 Sobic002G084400--Sobic010G232700 Sobic008G041000 Sobic008G041000 Sobic002G084400--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic002G084400--Sobic006G085900 Sobic002G251800 Sobic002G251800 Sobic002G084400--Sobic002G251800 Sobic005G028300 Sobic005G028300 Sobic002G084400--Sobic005G028300 Sobic006G069100 Sobic006G069100 Sobic002G084400--Sobic006G069100 Sobic002G084400--Sobic008G031200 Sobic008G171500 Sobic008G171500 Sobic002G084400--Sobic008G171500 Sobic002G084400--Sobic003G067201 Sobic003G124600--Sobic002G079100 Sobic006G170900 Sobic006G170900 Sobic003G124600--Sobic006G170900 Sobic002G292800 Sobic002G292800 Sobic003G124600--Sobic002G292800 Sobic003G016500 Sobic003G016500 Sobic003G124600--Sobic003G016500 Sobic003G124600--Sobic003G299500 Sobic007G034200 Sobic007G034200 Sobic003G124600--Sobic007G034200 Sobic009G102000 Sobic009G102000 Sobic003G124600--Sobic009G102000 Sobic003G113300 Sobic003G113300 Sobic003G124600--Sobic003G113300 Sobic001G424600 Sobic001G424600 Sobic003G124600--Sobic001G424600 Sobic002G079100--Sobic003G124600 Sobic002G079100--Sobic001G448100 Sobic008G017100 Sobic008G017100 Sobic002G079100--Sobic008G017100 Sobic008G080500 Sobic008G080500 Sobic002G079100--Sobic008G080500 Sobic002G079100--Sobic002G380100 Sobic002G079100--Sobic002G292800 Sobic010G278600 Sobic010G278600 Sobic002G079100--Sobic010G278600 Sobic006G245900 Sobic006G245900 Sobic002G079100--Sobic006G245900 Sobic001G482200 Sobic001G482200 Sobic002G079100--Sobic001G482200 Sobic005G078700 Sobic005G078700 Sobic010G143600--Sobic005G078700 Sobic002G173400 Sobic002G173400 Sobic010G143600--Sobic002G173400 Sobic003G194800 Sobic003G194800 Sobic010G143600--Sobic003G194800 Sobic010G143600--Sobic009G120400 Sobic003G183466 Sobic003G183466 Sobic010G143600--Sobic003G183466 Sobic003G204100 Sobic003G204100 Sobic010G143600--Sobic003G204100 Sobic006G008300 Sobic006G008300 Sobic010G143600--Sobic006G008300 Sobic010G143600--Sobic003G397100 Sobic003G184666 Sobic003G184666 Sobic010G143600--Sobic003G184666 Sobic005G000300 Sobic005G000300 Sobic010G091500--Sobic005G000300 Sobic003G322200 Sobic003G322200 Sobic010G091500--Sobic003G322200 Sobic008G152300 Sobic008G152300 Sobic010G091500--Sobic008G152300 Sobic010G091500--Sobic006G069100 Sobic010G091500--Sobic003G067201 Sobic010G091500--Sobic005G028300 Sobic010G091500--Sobic002G084400 Sobic002G344500 Sobic002G344500 Sobic010G091500--Sobic002G344500 Sobic006G208400 Sobic006G208400 Sobic010G091500--Sobic006G208400
Octagon: transcription factors


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