Gene annotation
Transcriptome id Sobic.006G140400.1
Synonym Sb06g021950, MSH1, ATMSH1, CHM1, CHM
Functional annotation DNA mismatch repair protein, putative, expressed
UniProt A0A1B6PM01 , A0A097PJK3
Pfam PF01541 PF01624 PF00488
Panther DB PTHR11361 PTHR11361:SF82
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006298; mismatch repair GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT3G24320 : MUTL protein homolog 1
RAP-DB (Rice) LOC_Os04g42784.1 : DNA mismatch repair protein, putative, expressed
MaizeGDB (Corn) Zm00025a056439
Brachypodium KQJ83470 , PNT61432 , PNT61431
Barley HORVU2Hr1G087660.19 , HORVU2Hr1G087660.18 , HORVU2Hr1G087660.15 , HORVU2Hr1G087660.14 , HORVU2Hr1G087660.16 , HORVU2Hr1G087660.11 , HORVU2Hr1G087660.10 , HORVU2Hr1G087660.13 , HORVU2Hr1G087660.39 , HORVU2Hr1G087660.38 , HORVU2Hr1G087660.33 , HORVU2Hr1G087660.32 , HORVU2Hr1G087660.31 , HORVU2Hr1G087660.30 , HORVU2Hr1G087660.37 , HORVU2Hr1G087660.36 , HORVU2Hr1G087660.35 , HORVU2Hr1G087660.34 , HORVU2Hr1G087660.42 , HORVU2Hr1G087660.43 , HORVU2Hr1G087660.41 , HORVU2Hr1G087660.17 , HORVU2Hr1G087660.12 , HORVU2Hr1G087660.9 , HORVU2Hr1G087660.8 , HORVU2Hr1G087660.1 , HORVU2Hr1G087660.3 , HORVU2Hr1G087660.2 , HORVU2Hr1G087660.5 , HORVU2Hr1G087660.4 , HORVU2Hr1G087660.7 , HORVU2Hr1G087660.6 , HORVU2Hr1G087660.28 , HORVU2Hr1G087660.29 , HORVU2Hr1G087660.21 , HORVU2Hr1G087660.22 , HORVU2Hr1G087660.23 , HORVU2Hr1G087660.24 , HORVU2Hr1G087660.25 , HORVU2Hr1G087660.26 , HORVU2Hr1G087660.27
Wheat TraesCS2D02G359500 , TraesCS2A02G362100 , TraesCS2B02G379900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G453500 expressed protein -
2 Sobic.010G224700 - K17680: twinkle protein
3 Sobic.002G112600 zinc finger family protein, putative, expressed -
4 Sobic.002G386900 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
5 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
6 Sobic.010G032300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.004G027400 - -
8 Sobic.007G017200 OsFBX142 - F-box domain containing protein, expressed -
9 Sobic.002G043000 HEN1, putative, expressed -
10 Sobic.006G059500 expressed protein K13150: COIL, coilin
11 Sobic.006G245900 FAR1 family protein, expressed -
12 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
13 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
14 Sobic.009G105400 OsFBX135 - F-box domain containing protein, expressed -
15 Sobic.006G274100 ribosome biogenesis regulatory protein, putative, expressed K14852: regulator of ribosome biosynthesis
16 Sobic.004G313500 acetyltransferase, GNAT family, putative, expressed -
17 Sobic.004G097900 expressed protein -
18 Sobic.004G342300 expressed protein -
19 Sobic.004G354000 OsSigP1 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed -
20 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin


Gene co-expression network
sample Sobic006G140400 Sobic006G140400 Sobic001G453500 Sobic001G453500 Sobic006G140400--Sobic001G453500 Sobic010G224700 Sobic010G224700 Sobic006G140400--Sobic010G224700 Sobic002G112600 Sobic002G112600 Sobic006G140400--Sobic002G112600 Sobic002G386900 Sobic002G386900 Sobic006G140400--Sobic002G386900 Sobic004G215900 Sobic004G215900 Sobic006G140400--Sobic004G215900 Sobic010G032300 Sobic010G032300 Sobic006G140400--Sobic010G032300 Sobic004G027400 Sobic004G027400 Sobic006G140400--Sobic004G027400 Sobic007G017200 Sobic007G017200 Sobic006G140400--Sobic007G017200 Sobic002G043000 Sobic002G043000 Sobic006G140400--Sobic002G043000 Sobic006G111200 Sobic006G111200 Sobic001G453500--Sobic006G111200 Sobic001G368300 Sobic001G368300 Sobic001G453500--Sobic001G368300 Sobic004G151000 Sobic004G151000 Sobic001G453500--Sobic004G151000 Sobic001G453500--Sobic006G140400 Sobic001G453500--Sobic004G027400 Sobic004G027300 Sobic004G027300 Sobic001G453500--Sobic004G027300 Sobic001G049800 Sobic001G049800 Sobic001G453500--Sobic001G049800 Sobic001G453500--Sobic002G112600 Sobic009G105400 Sobic009G105400 Sobic001G453500--Sobic009G105400 Sobic002G378100 Sobic002G378100 Sobic010G224700--Sobic002G378100 Sobic008G017100 Sobic008G017100 Sobic010G224700--Sobic008G017100 Sobic010G224700--Sobic004G027300 Sobic001G119600 Sobic001G119600 Sobic010G224700--Sobic001G119600 Sobic003G123200 Sobic003G123200 Sobic010G224700--Sobic003G123200 Sobic008G163500 Sobic008G163500 Sobic010G224700--Sobic008G163500 Sobic010G224700--Sobic001G049800 Sobic003G425100 Sobic003G425100 Sobic010G224700--Sobic003G425100 Sobic003G199300 Sobic003G199300 Sobic010G224700--Sobic003G199300 Sobic002G112600--Sobic004G151000 Sobic002G112600--Sobic004G215900 Sobic002G112600--Sobic010G224700 Sobic007G014800 Sobic007G014800 Sobic002G112600--Sobic007G014800 Sobic005G000300 Sobic005G000300 Sobic002G112600--Sobic005G000300 Sobic002G112600--Sobic004G027400 Sobic009G163600 Sobic009G163600 Sobic002G112600--Sobic009G163600 Sobic002G112600--Sobic001G453500 Sobic002G112600--Sobic004G027300 Sobic002G386600 Sobic002G386600 Sobic002G386900--Sobic002G386600 Sobic004G097900 Sobic004G097900 Sobic002G386900--Sobic004G097900 Sobic001G123600 Sobic001G123600 Sobic002G386900--Sobic001G123600 Sobic006G191200 Sobic006G191200 Sobic002G386900--Sobic006G191200 Sobic007G034200 Sobic007G034200 Sobic002G386900--Sobic007G034200 Sobic001G051400 Sobic001G051400 Sobic002G386900--Sobic001G051400 Sobic001G200200 Sobic001G200200 Sobic002G386900--Sobic001G200200 Sobic002G239601 Sobic002G239601 Sobic002G386900--Sobic002G239601 Sobic002G292800 Sobic002G292800 Sobic002G386900--Sobic002G292800 Sobic008G068100 Sobic008G068100 Sobic004G215900--Sobic008G068100 Sobic006G236000 Sobic006G236000 Sobic004G215900--Sobic006G236000 Sobic009G191500 Sobic009G191500 Sobic004G215900--Sobic009G191500 Sobic002G003300 Sobic002G003300 Sobic004G215900--Sobic002G003300 Sobic001G024000 Sobic001G024000 Sobic004G215900--Sobic001G024000 Sobic008G111600 Sobic008G111600 Sobic004G215900--Sobic008G111600 Sobic004G038100 Sobic004G038100 Sobic004G215900--Sobic004G038100 Sobic004G215900--Sobic002G112600 Sobic004G215900--Sobic002G043000 Sobic004G342300 Sobic004G342300 Sobic010G032300--Sobic004G342300 Sobic010G032300--Sobic006G140400 Sobic006G274100 Sobic006G274100 Sobic010G032300--Sobic006G274100 Sobic010G032300--Sobic010G224700 Sobic006G059500 Sobic006G059500 Sobic010G032300--Sobic006G059500 Sobic002G132600 Sobic002G132600 Sobic010G032300--Sobic002G132600 Sobic009G211200 Sobic009G211200 Sobic010G032300--Sobic009G211200 Sobic003G259600 Sobic003G259600 Sobic010G032300--Sobic003G259600 Sobic005G028300 Sobic005G028300 Sobic010G032300--Sobic005G028300 Sobic004G027400--Sobic004G215900 Sobic004G027400--Sobic001G453500 Sobic004G027400--Sobic002G112600 Sobic004G027400--Sobic004G027300 Sobic004G027400--Sobic008G068100 Sobic004G027400--Sobic010G224700 Sobic004G027400--Sobic006G140400 Sobic005G028100 Sobic005G028100 Sobic004G027400--Sobic005G028100 Sobic004G027400--Sobic007G014800 Sobic001G033900 Sobic001G033900 Sobic007G017200--Sobic001G033900 Sobic007G017200--Sobic006G140400 Sobic001G004100 Sobic001G004100 Sobic007G017200--Sobic001G004100 Sobic004G031300 Sobic004G031300 Sobic007G017200--Sobic004G031300 Sobic001G013300 Sobic001G013300 Sobic007G017200--Sobic001G013300 Sobic006G245900 Sobic006G245900 Sobic007G017200--Sobic006G245900 Sobic007G017200--Sobic003G259600 Sobic007G016900 Sobic007G016900 Sobic007G017200--Sobic007G016900 Sobic004G020100 Sobic004G020100 Sobic007G017200--Sobic004G020100 Sobic002G043000--Sobic008G111600 Sobic002G043000--Sobic004G215900 Sobic002G426100 Sobic002G426100 Sobic002G043000--Sobic002G426100 Sobic002G043000--Sobic006G236000 Sobic002G043000--Sobic008G068100 Sobic006G181800 Sobic006G181800 Sobic002G043000--Sobic006G181800 Sobic002G043000--Sobic004G038100 Sobic006G280100 Sobic006G280100 Sobic002G043000--Sobic006G280100 Sobic004G129500 Sobic004G129500 Sobic002G043000--Sobic004G129500
Octagon: transcription factors


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