Gene annotation
Transcriptome id Sobic.010G032300.1
Synonym Sb10g002910
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt C5Z3U2
Pfam PF13812 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF624
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G77010 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os03g63260.3 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G342300 expressed protein -
2 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
3 Sobic.006G274100 ribosome biogenesis regulatory protein, putative, expressed K14852: regulator of ribosome biosynthesis
4 Sobic.010G224700 - K17680: twinkle protein
5 Sobic.006G059500 expressed protein K13150: COIL, coilin
6 Sobic.002G132600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K14314: NUP210, nuclear pore complex protein Nup210
7 Sobic.009G211200 tRNAHis guanylyltransferase family protein, expressed K10761: tRNA(His) guanylyltransferase
8 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
9 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
10 Sobic.009G104900 - K03348: anaphase-promoting complex subunit 1
11 Sobic.002G105101 - -
12 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
13 Sobic.004G119400 ATP-binding domain-containing protein, putative, expressed -
14 Sobic.010G215900 type II intron maturase protein, putative, expressed -
15 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
16 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
17 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
18 Sobic.009G066400 MAR-binding filament-like protein 1, putative, expressed -
19 Sobic.002G423400 PPR repeat containing protein, expressed -
20 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1


Gene co-expression network
sample Sobic010G032300 Sobic010G032300 Sobic004G342300 Sobic004G342300 Sobic010G032300--Sobic004G342300 Sobic006G140400 Sobic006G140400 Sobic010G032300--Sobic006G140400 Sobic006G274100 Sobic006G274100 Sobic010G032300--Sobic006G274100 Sobic010G224700 Sobic010G224700 Sobic010G032300--Sobic010G224700 Sobic006G059500 Sobic006G059500 Sobic010G032300--Sobic006G059500 Sobic002G132600 Sobic002G132600 Sobic010G032300--Sobic002G132600 Sobic009G211200 Sobic009G211200 Sobic010G032300--Sobic009G211200 Sobic003G259600 Sobic003G259600 Sobic010G032300--Sobic003G259600 Sobic005G028300 Sobic005G028300 Sobic010G032300--Sobic005G028300 Sobic004G354000 Sobic004G354000 Sobic004G342300--Sobic004G354000 Sobic004G038100 Sobic004G038100 Sobic004G342300--Sobic004G038100 Sobic003G360300 Sobic003G360300 Sobic004G342300--Sobic003G360300 Sobic008G080500 Sobic008G080500 Sobic004G342300--Sobic008G080500 Sobic004G342300--Sobic010G032300 Sobic006G208400 Sobic006G208400 Sobic004G342300--Sobic006G208400 Sobic010G262100 Sobic010G262100 Sobic004G342300--Sobic010G262100 Sobic006G181800 Sobic006G181800 Sobic004G342300--Sobic006G181800 Sobic004G342300--Sobic003G259600 Sobic001G453500 Sobic001G453500 Sobic006G140400--Sobic001G453500 Sobic006G140400--Sobic010G224700 Sobic002G112600 Sobic002G112600 Sobic006G140400--Sobic002G112600 Sobic002G386900 Sobic002G386900 Sobic006G140400--Sobic002G386900 Sobic004G215900 Sobic004G215900 Sobic006G140400--Sobic004G215900 Sobic006G140400--Sobic010G032300 Sobic004G027400 Sobic004G027400 Sobic006G140400--Sobic004G027400 Sobic007G017200 Sobic007G017200 Sobic006G140400--Sobic007G017200 Sobic002G043000 Sobic002G043000 Sobic006G140400--Sobic002G043000 Sobic008G101900 Sobic008G101900 Sobic006G274100--Sobic008G101900 Sobic006G274100--Sobic006G140400 Sobic006G274100--Sobic010G032300 Sobic002G380100 Sobic002G380100 Sobic006G274100--Sobic002G380100 Sobic006G274100--Sobic004G354000 Sobic004G119400 Sobic004G119400 Sobic006G274100--Sobic004G119400 Sobic006G274100--Sobic004G027400 Sobic006G274100--Sobic003G259600 Sobic009G066400 Sobic009G066400 Sobic006G274100--Sobic009G066400 Sobic002G378100 Sobic002G378100 Sobic010G224700--Sobic002G378100 Sobic008G017100 Sobic008G017100 Sobic010G224700--Sobic008G017100 Sobic004G027300 Sobic004G027300 Sobic010G224700--Sobic004G027300 Sobic001G119600 Sobic001G119600 Sobic010G224700--Sobic001G119600 Sobic003G123200 Sobic003G123200 Sobic010G224700--Sobic003G123200 Sobic008G163500 Sobic008G163500 Sobic010G224700--Sobic008G163500 Sobic001G049800 Sobic001G049800 Sobic010G224700--Sobic001G049800 Sobic003G425100 Sobic003G425100 Sobic010G224700--Sobic003G425100 Sobic003G199300 Sobic003G199300 Sobic010G224700--Sobic003G199300 Sobic004G151000 Sobic004G151000 Sobic006G059500--Sobic004G151000 Sobic006G059500--Sobic001G049800 Sobic006G059500--Sobic002G132600 Sobic006G111200 Sobic006G111200 Sobic006G059500--Sobic006G111200 Sobic006G059500--Sobic004G215900 Sobic007G060600 Sobic007G060600 Sobic006G059500--Sobic007G060600 Sobic006G059500--Sobic006G140400 Sobic006G059500--Sobic001G453500 Sobic009G142000 Sobic009G142000 Sobic006G059500--Sobic009G142000 Sobic009G104900 Sobic009G104900 Sobic002G132600--Sobic009G104900 Sobic003G432300 Sobic003G432300 Sobic002G132600--Sobic003G432300 Sobic005G028100 Sobic005G028100 Sobic002G132600--Sobic005G028100 Sobic001G373000 Sobic001G373000 Sobic002G132600--Sobic001G373000 Sobic002G126800 Sobic002G126800 Sobic002G132600--Sobic002G126800 Sobic002G132600--Sobic004G038100 Sobic002G132600--Sobic006G059500 Sobic002G254800 Sobic002G254800 Sobic002G132600--Sobic002G254800 Sobic010G250800 Sobic010G250800 Sobic002G132600--Sobic010G250800 Sobic001G429600 Sobic001G429600 Sobic009G211200--Sobic001G429600 Sobic006G125900 Sobic006G125900 Sobic009G211200--Sobic006G125900 Sobic004G224600 Sobic004G224600 Sobic009G211200--Sobic004G224600 Sobic001G401500 Sobic001G401500 Sobic009G211200--Sobic001G401500 Sobic002G105101 Sobic002G105101 Sobic009G211200--Sobic002G105101 Sobic009G101200 Sobic009G101200 Sobic009G211200--Sobic009G101200 Sobic006G002800 Sobic006G002800 Sobic009G211200--Sobic006G002800 Sobic005G108000 Sobic005G108000 Sobic009G211200--Sobic005G108000 Sobic001G393900 Sobic001G393900 Sobic009G211200--Sobic001G393900 Sobic003G361400 Sobic003G361400 Sobic003G259600--Sobic003G361400 Sobic003G259600--Sobic003G360300 Sobic003G259600--Sobic001G373000 Sobic003G331000 Sobic003G331000 Sobic003G259600--Sobic003G331000 Sobic003G259600--Sobic004G038100 Sobic010G269300 Sobic010G269300 Sobic003G259600--Sobic010G269300 Sobic003G028400 Sobic003G028400 Sobic003G259600--Sobic003G028400 Sobic002G142700 Sobic002G142700 Sobic003G259600--Sobic002G142700 Sobic001G334100 Sobic001G334100 Sobic003G259600--Sobic001G334100 Sobic002G389200 Sobic002G389200 Sobic005G028300--Sobic002G389200 Sobic003G051500 Sobic003G051500 Sobic005G028300--Sobic003G051500 Sobic002G251800 Sobic002G251800 Sobic005G028300--Sobic002G251800 Sobic001G001200 Sobic001G001200 Sobic005G028300--Sobic001G001200 Sobic003G419800 Sobic003G419800 Sobic005G028300--Sobic003G419800 Sobic003G014700 Sobic003G014700 Sobic005G028300--Sobic003G014700 Sobic001G391101 Sobic001G391101 Sobic005G028300--Sobic001G391101 Sobic002G084400 Sobic002G084400 Sobic005G028300--Sobic002G084400 Sobic010G083900 Sobic010G083900 Sobic005G028300--Sobic010G083900
Octagon: transcription factors


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