Gene annotation
Transcriptome id Sobic.006G274100.1
Synonym Sb06g033550
Functional annotation ribosome biogenesis regulatory protein, putative, expressed
UniProt A0A1B6PP92
Pfam PF04939
Panther DB PTHR17602
NCBI CDD KOG1765; Regulator of ribosome synthesis
KEGG Orthology K14852; regulator of ribosome biosynthesis
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT2G37990 : ribosome biogenesis regulatory protein (RRS1) family protein
RAP-DB (Rice) LOC_Os04g58830.1 : ribosome biogenesis regulatory protein, putative, expressed
MaizeGDB (Corn) Zm00025a035763 , Zm00025a023175 , Zm00025a001988
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G101900 plastid division regulator MinE, putative, expressed -
2 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
3 Sobic.010G032300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.002G380100 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
5 Sobic.004G354000 OsSigP1 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed -
6 Sobic.004G119400 ATP-binding domain-containing protein, putative, expressed -
7 Sobic.004G027400 - -
8 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
9 Sobic.009G066400 MAR-binding filament-like protein 1, putative, expressed -
10 Sobic.004G199200 expressed protein K10858: DNA mismatch repair protein PMS2
11 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
12 Sobic.002G356600 ZCW7, putative, expressed -
13 Sobic.004G342300 expressed protein -
14 Sobic.010G224700 - K17680: twinkle protein
15 Sobic.007G094500 KH domain containing protein, putative, expressed -
16 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
17 Sobic.001G453500 expressed protein -
18 Sobic.003G360300 exostosin family domain containing protein, expressed -
19 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
20 Sobic.001G395200 cyclin-related protein, putative, expressed -


Gene co-expression network
sample Sobic006G274100 Sobic006G274100 Sobic008G101900 Sobic008G101900 Sobic006G274100--Sobic008G101900 Sobic006G140400 Sobic006G140400 Sobic006G274100--Sobic006G140400 Sobic010G032300 Sobic010G032300 Sobic006G274100--Sobic010G032300 Sobic002G380100 Sobic002G380100 Sobic006G274100--Sobic002G380100 Sobic004G354000 Sobic004G354000 Sobic006G274100--Sobic004G354000 Sobic004G119400 Sobic004G119400 Sobic006G274100--Sobic004G119400 Sobic004G027400 Sobic004G027400 Sobic006G274100--Sobic004G027400 Sobic003G259600 Sobic003G259600 Sobic006G274100--Sobic003G259600 Sobic009G066400 Sobic009G066400 Sobic006G274100--Sobic009G066400 Sobic008G101900--Sobic006G274100 Sobic008G058000 Sobic008G058000 Sobic008G101900--Sobic008G058000 Sobic003G223000 Sobic003G223000 Sobic008G101900--Sobic003G223000 Sobic006G193500 Sobic006G193500 Sobic008G101900--Sobic006G193500 Sobic001G371700 Sobic001G371700 Sobic008G101900--Sobic001G371700 Sobic001G395200 Sobic001G395200 Sobic008G101900--Sobic001G395200 Sobic001G199500 Sobic001G199500 Sobic008G101900--Sobic001G199500 Sobic002G272400 Sobic002G272400 Sobic008G101900--Sobic002G272400 Sobic008G101900--Sobic004G354000 Sobic001G453500 Sobic001G453500 Sobic006G140400--Sobic001G453500 Sobic010G224700 Sobic010G224700 Sobic006G140400--Sobic010G224700 Sobic002G112600 Sobic002G112600 Sobic006G140400--Sobic002G112600 Sobic002G386900 Sobic002G386900 Sobic006G140400--Sobic002G386900 Sobic004G215900 Sobic004G215900 Sobic006G140400--Sobic004G215900 Sobic006G140400--Sobic010G032300 Sobic006G140400--Sobic004G027400 Sobic007G017200 Sobic007G017200 Sobic006G140400--Sobic007G017200 Sobic002G043000 Sobic002G043000 Sobic006G140400--Sobic002G043000 Sobic004G342300 Sobic004G342300 Sobic010G032300--Sobic004G342300 Sobic010G032300--Sobic006G140400 Sobic010G032300--Sobic006G274100 Sobic010G032300--Sobic010G224700 Sobic006G059500 Sobic006G059500 Sobic010G032300--Sobic006G059500 Sobic002G132600 Sobic002G132600 Sobic010G032300--Sobic002G132600 Sobic009G211200 Sobic009G211200 Sobic010G032300--Sobic009G211200 Sobic010G032300--Sobic003G259600 Sobic005G028300 Sobic005G028300 Sobic010G032300--Sobic005G028300 Sobic002G079100 Sobic002G079100 Sobic002G380100--Sobic002G079100 Sobic002G380100--Sobic004G119400 Sobic008G017100 Sobic008G017100 Sobic002G380100--Sobic008G017100 Sobic006G111200 Sobic006G111200 Sobic002G380100--Sobic006G111200 Sobic001G448100 Sobic001G448100 Sobic002G380100--Sobic001G448100 Sobic003G185250 Sobic003G185250 Sobic002G380100--Sobic003G185250 Sobic003G070100 Sobic003G070100 Sobic002G380100--Sobic003G070100 Sobic010G050700 Sobic010G050700 Sobic002G380100--Sobic010G050700 Sobic009G096100 Sobic009G096100 Sobic002G380100--Sobic009G096100 Sobic006G208400 Sobic006G208400 Sobic004G354000--Sobic006G208400 Sobic004G354000--Sobic004G342300 Sobic004G354000--Sobic008G017100 Sobic002G356600 Sobic002G356600 Sobic004G354000--Sobic002G356600 Sobic001G322600 Sobic001G322600 Sobic004G354000--Sobic001G322600 Sobic004G354000--Sobic002G079100 Sobic004G356200 Sobic004G356200 Sobic004G354000--Sobic004G356200 Sobic001G027100 Sobic001G027100 Sobic004G354000--Sobic001G027100 Sobic006G236000 Sobic006G236000 Sobic004G354000--Sobic006G236000 Sobic004G119400--Sobic008G017100 Sobic004G119400--Sobic010G224700 Sobic006G269800 Sobic006G269800 Sobic004G119400--Sobic006G269800 Sobic007G094500 Sobic007G094500 Sobic004G119400--Sobic007G094500 Sobic004G119400--Sobic002G380100 Sobic001G429600 Sobic001G429600 Sobic004G119400--Sobic001G429600 Sobic002G309200 Sobic002G309200 Sobic004G119400--Sobic002G309200 Sobic004G119400--Sobic003G070100 Sobic001G540800 Sobic001G540800 Sobic004G119400--Sobic001G540800 Sobic004G027400--Sobic004G215900 Sobic004G027400--Sobic001G453500 Sobic004G027400--Sobic002G112600 Sobic004G027300 Sobic004G027300 Sobic004G027400--Sobic004G027300 Sobic008G068100 Sobic008G068100 Sobic004G027400--Sobic008G068100 Sobic004G027400--Sobic010G224700 Sobic004G027400--Sobic006G140400 Sobic005G028100 Sobic005G028100 Sobic004G027400--Sobic005G028100 Sobic007G014800 Sobic007G014800 Sobic004G027400--Sobic007G014800 Sobic003G361400 Sobic003G361400 Sobic003G259600--Sobic003G361400 Sobic003G360300 Sobic003G360300 Sobic003G259600--Sobic003G360300 Sobic001G373000 Sobic001G373000 Sobic003G259600--Sobic001G373000 Sobic003G331000 Sobic003G331000 Sobic003G259600--Sobic003G331000 Sobic004G038100 Sobic004G038100 Sobic003G259600--Sobic004G038100 Sobic010G269300 Sobic010G269300 Sobic003G259600--Sobic010G269300 Sobic003G028400 Sobic003G028400 Sobic003G259600--Sobic003G028400 Sobic002G142700 Sobic002G142700 Sobic003G259600--Sobic002G142700 Sobic001G334100 Sobic001G334100 Sobic003G259600--Sobic001G334100 Sobic009G066400--Sobic007G014800 Sobic009G142000 Sobic009G142000 Sobic009G066400--Sobic009G142000 Sobic005G143300 Sobic005G143300 Sobic009G066400--Sobic005G143300 Sobic009G148200 Sobic009G148200 Sobic009G066400--Sobic009G148200 Sobic001G367100 Sobic001G367100 Sobic009G066400--Sobic001G367100 Sobic009G066400--Sobic001G453500 Sobic009G066400--Sobic006G274100 Sobic001G245900 Sobic001G245900 Sobic009G066400--Sobic001G245900 Sobic009G066400--Sobic010G224700
Octagon: transcription factors


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