Gene annotation
Transcriptome id Sobic.010G099300.1,Sobic.010G099300.2
Synonym
Functional annotation -
UniProt A0A194YI96 , A0A1W0VS74
Pfam PF02527
Panther DB PTHR31760 PTHR31760:SF0 PTHR31760:SF0 PTHR31760
NCBI CDD -
KEGG Orthology K03501; gidB, 16S rRNA (guanine527-N7)-methyltransferase
Gene Ontology GO:0008649; rRNA methyltransferase activity GO:0006364rRNA processing GO:0005737cytoplasm GO:0005737cytoplasm GO:0006364rRNA processing GO:0008649rRNA methyltransferase activity


Orthologs (automatic annotation)
TAIR AT5G50110 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) -
MaizeGDB (Corn) Zm00025a042643
Brachypodium -
Barley -
Wheat TraesCS7A02G195900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
2 Sobic.007G182600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
3 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
4 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.001G437801 - K04077: groEL, chaperonin GroEL
6 Sobic.001G049800 DDT domain containing protein, putative, expressed -
7 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
8 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
9 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
10 Sobic.001G390900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
11 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
12 Sobic.008G100400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"SMK1(Ortholog in maize:Li et al., 2014)"(PubMedID : 31659912)@tetratricopeptide-like helical, putative, expressed -
13 Sobic.001G158400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@recA protein, putative, expressed K03553: recombination protein RecA
14 Sobic.008G147400 "responsible for fertility restoration, localized in anthers"(PubMedID : 20585750)@tetratricopeptide-like helical, putative, expressed -
15 Sobic.001G228300 SAP domain containing protein, expressed -
16 Sobic.010G224700 - K17680: twinkle protein
17 Sobic.006G274100 ribosome biogenesis regulatory protein, putative, expressed K14852: regulator of ribosome biosynthesis
18 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
19 Sobic.006G273900 expressed protein -
20 Sobic.001G013900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, expressed -


Gene co-expression network
sample Sobic010G099300 Sobic010G099300 Sobic001G040600 Sobic001G040600 Sobic010G099300--Sobic001G040600 Sobic007G182600 Sobic007G182600 Sobic010G099300--Sobic007G182600 Sobic007G060600 Sobic007G060600 Sobic010G099300--Sobic007G060600 Sobic001G081300 Sobic001G081300 Sobic010G099300--Sobic001G081300 Sobic001G437801 Sobic001G437801 Sobic010G099300--Sobic001G437801 Sobic001G049800 Sobic001G049800 Sobic010G099300--Sobic001G049800 Sobic003G051500 Sobic003G051500 Sobic010G099300--Sobic003G051500 Sobic001G395300 Sobic001G395300 Sobic010G099300--Sobic001G395300 Sobic006G271900 Sobic006G271900 Sobic010G099300--Sobic006G271900 Sobic001G040600--Sobic007G060600 Sobic001G040600--Sobic006G271900 Sobic001G040600--Sobic010G099300 Sobic003G336500 Sobic003G336500 Sobic001G040600--Sobic003G336500 Sobic001G040600--Sobic001G049800 Sobic001G040600--Sobic003G051500 Sobic008G100400 Sobic008G100400 Sobic001G040600--Sobic008G100400 Sobic001G040600--Sobic001G081300 Sobic002G251800 Sobic002G251800 Sobic001G040600--Sobic002G251800 Sobic007G182600--Sobic008G100400 Sobic007G182600--Sobic010G099300 Sobic001G061600 Sobic001G061600 Sobic007G182600--Sobic001G061600 Sobic007G182600--Sobic001G081300 Sobic007G182600--Sobic001G040600 Sobic008G147400 Sobic008G147400 Sobic007G182600--Sobic008G147400 Sobic007G182600--Sobic003G051500 Sobic010G252000 Sobic010G252000 Sobic007G182600--Sobic010G252000 Sobic002G380100 Sobic002G380100 Sobic007G182600--Sobic002G380100 Sobic007G060600--Sobic001G049800 Sobic007G060600--Sobic001G040600 Sobic007G059700 Sobic007G059700 Sobic007G060600--Sobic007G059700 Sobic004G151000 Sobic004G151000 Sobic007G060600--Sobic004G151000 Sobic004G027300 Sobic004G027300 Sobic007G060600--Sobic004G027300 Sobic006G273900 Sobic006G273900 Sobic007G060600--Sobic006G273900 Sobic009G238700 Sobic009G238700 Sobic007G060600--Sobic009G238700 Sobic006G111200 Sobic006G111200 Sobic007G060600--Sobic006G111200 Sobic009G191500 Sobic009G191500 Sobic007G060600--Sobic009G191500 Sobic001G391101 Sobic001G391101 Sobic001G081300--Sobic001G391101 Sobic007G179600 Sobic007G179600 Sobic001G081300--Sobic007G179600 Sobic001G347100 Sobic001G347100 Sobic001G081300--Sobic001G347100 Sobic001G081300--Sobic009G238700 Sobic001G081300--Sobic003G051500 Sobic003G419800 Sobic003G419800 Sobic001G081300--Sobic003G419800 Sobic001G081300--Sobic007G060600 Sobic001G081300--Sobic001G049800 Sobic001G081300--Sobic010G099300 Sobic001G437801--Sobic010G099300 Sobic001G437801--Sobic001G040600 Sobic001G437801--Sobic001G395300 Sobic001G138000 Sobic001G138000 Sobic001G437801--Sobic001G138000 Sobic001G437801--Sobic007G182600 Sobic003G030400 Sobic003G030400 Sobic001G437801--Sobic003G030400 Sobic001G368300 Sobic001G368300 Sobic001G437801--Sobic001G368300 Sobic001G228300 Sobic001G228300 Sobic001G437801--Sobic001G228300 Sobic001G437801--Sobic001G049800 Sobic001G049800--Sobic007G060600 Sobic001G049800--Sobic004G151000 Sobic001G049800--Sobic004G027300 Sobic001G544300 Sobic001G544300 Sobic001G049800--Sobic001G544300 Sobic010G224700 Sobic010G224700 Sobic001G049800--Sobic010G224700 Sobic001G049800--Sobic006G111200 Sobic006G059500 Sobic006G059500 Sobic001G049800--Sobic006G059500 Sobic002G378100 Sobic002G378100 Sobic001G049800--Sobic002G378100 Sobic010G083900 Sobic010G083900 Sobic001G049800--Sobic010G083900 Sobic003G051500--Sobic001G391101 Sobic001G001200 Sobic001G001200 Sobic003G051500--Sobic001G001200 Sobic005G028300 Sobic005G028300 Sobic003G051500--Sobic005G028300 Sobic003G051500--Sobic001G040600 Sobic003G051500--Sobic001G081300 Sobic003G051500--Sobic003G419800 Sobic003G051500--Sobic007G182600 Sobic003G051500--Sobic010G099300 Sobic004G217900 Sobic004G217900 Sobic003G051500--Sobic004G217900 Sobic009G137000 Sobic009G137000 Sobic001G395300--Sobic009G137000 Sobic002G404900 Sobic002G404900 Sobic001G395300--Sobic002G404900 Sobic001G395300--Sobic001G228300 Sobic006G237100 Sobic006G237100 Sobic001G395300--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic001G395300--Sobic006G263800 Sobic002G140000 Sobic002G140000 Sobic001G395300--Sobic002G140000 Sobic006G204100 Sobic006G204100 Sobic001G395300--Sobic006G204100 Sobic007G116100 Sobic007G116100 Sobic001G395300--Sobic007G116100 Sobic010G027200 Sobic010G027200 Sobic001G395300--Sobic010G027200 Sobic006G271900--Sobic001G040600 Sobic006G271900--Sobic007G060600 Sobic009G253200 Sobic009G253200 Sobic006G271900--Sobic009G253200 Sobic006G271900--Sobic001G049800 Sobic006G271900--Sobic006G111200 Sobic006G271900--Sobic002G251800 Sobic001G480400 Sobic001G480400 Sobic006G271900--Sobic001G480400 Sobic006G271900--Sobic005G028300 Sobic006G271900--Sobic001G081300
Octagon: transcription factors


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