Gene annotation
Transcriptome id Sobic.001G158400.1
Synonym Sb01g013810
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
recA protein, putative, expressed
UniProt A0A1B6QJ85
Pfam PF00154
Panther DB PTHR22942 PTHR22942:SF37
NCBI CDD KOG1433; DNA repair protein RAD51/RHP55
KEGG Orthology K03553; recombination protein RecA
Gene Ontology GO:0009432; SOS response GO:0006281DNA repair GO:0005524ATP binding GO:0003697single-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT1G79050 : recA DNA recombination family protein
RAP-DB (Rice) LOC_Os03g43850.1 : recA protein, putative, expressed
MaizeGDB (Corn) Zm00025a007310
Brachypodium KQK14017 , KQK14019 , KQK14018 , KQK14020
Barley HORVU5Hr1G093270.4 , HORVU5Hr1G093270.5 , HORVU5Hr1G093270.6 , HORVU5Hr1G093270.7 , HORVU5Hr1G093270.1 , HORVU5Hr1G093270.2 , HORVU5Hr1G093270.3 , HORVU5Hr1G093270.8 , HORVU5Hr1G093270.9 , HORVU5Hr1G093270.29 , HORVU5Hr1G093270.28 , HORVU5Hr1G093270.27 , HORVU5Hr1G093270.26 , HORVU5Hr1G093270.25 , HORVU5Hr1G093270.24 , HORVU5Hr1G093270.23 , HORVU5Hr1G093270.22 , HORVU5Hr1G093270.21 , HORVU5Hr1G093270.20 , HORVU5Hr1G093270.34 , HORVU5Hr1G093270.35 , HORVU5Hr1G093270.36 , HORVU5Hr1G093270.37 , HORVU5Hr1G093270.30 , HORVU5Hr1G093270.31 , HORVU5Hr1G093270.32 , HORVU5Hr1G093270.33 , HORVU5Hr1G093270.16 , HORVU5Hr1G093270.17 , HORVU5Hr1G093270.15 , HORVU5Hr1G093270.12 , HORVU5Hr1G093270.13 , HORVU5Hr1G093270.10 , HORVU5Hr1G093270.11 , HORVU5Hr1G093270.18 , HORVU5Hr1G093270.19 , HORVU5Hr1G093270.14
Wheat TraesCS5B02G379700 , TraesCS5D02G386100 , TraesCS5A02G376100
Populus -


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cDNA sequences
Sobic.001G158400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G235600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
3 Sobic.005G022000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Mpv17 / PMP22 family domain containing protein, expressed K13347: PXMP2, peroxisomal membrane protein 2
4 Sobic.003G136400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
5 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
6 Sobic.003G237100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CRR2, putative, expressed -
7 Sobic.001G390900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
8 Sobic.001G441200 translocase of chloroplast 34, putative, expressed -
9 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
10 Sobic.001G104300 differentiation protein, putative, expressed K09761: 16S rRNA (uracil1498-N3)-methyltransferase
11 Sobic.006G281066 - -
12 Sobic.002G111800 aspartokinase, chloroplast precursor, putative, expressed K00928: aspartate kinase
13 Sobic.001G027100 FEN1A - Putative flap endonuclease protein, expressed K04799: FEN1, flap endonuclease-1
14 Sobic.002G354700 zinc finger family protein, putative, expressed -
15 Sobic.001G013900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, expressed -
16 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
17 Sobic.008G147400 "responsible for fertility restoration, localized in anthers"(PubMedID : 20585750)@tetratricopeptide-like helical, putative, expressed -
18 Sobic.010G091500 pentatricopeptide, putative, expressed -
19 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
20 Sobic.001G212200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@LOI1, putative, expressed -


Gene co-expression network
sample Sobic001G158400 Sobic001G158400 Sobic002G235600 Sobic002G235600 Sobic001G158400--Sobic002G235600 Sobic010G099300 Sobic010G099300 Sobic001G158400--Sobic010G099300 Sobic005G022000 Sobic005G022000 Sobic001G158400--Sobic005G022000 Sobic003G136400 Sobic003G136400 Sobic001G158400--Sobic003G136400 Sobic003G051500 Sobic003G051500 Sobic001G158400--Sobic003G051500 Sobic003G237100 Sobic003G237100 Sobic001G158400--Sobic003G237100 Sobic001G390900 Sobic001G390900 Sobic001G158400--Sobic001G390900 Sobic001G441200 Sobic001G441200 Sobic001G158400--Sobic001G441200 Sobic004G217900 Sobic004G217900 Sobic001G158400--Sobic004G217900 Sobic002G235600--Sobic001G158400 Sobic002G360200 Sobic002G360200 Sobic002G235600--Sobic002G360200 Sobic002G111800 Sobic002G111800 Sobic002G235600--Sobic002G111800 Sobic002G235600--Sobic003G136400 Sobic001G013900 Sobic001G013900 Sobic002G235600--Sobic001G013900 Sobic001G228300 Sobic001G228300 Sobic002G235600--Sobic001G228300 Sobic006G114300 Sobic006G114300 Sobic002G235600--Sobic006G114300 Sobic001G188600 Sobic001G188600 Sobic002G235600--Sobic001G188600 Sobic002G201100 Sobic002G201100 Sobic002G235600--Sobic002G201100 Sobic001G040600 Sobic001G040600 Sobic010G099300--Sobic001G040600 Sobic007G182600 Sobic007G182600 Sobic010G099300--Sobic007G182600 Sobic007G060600 Sobic007G060600 Sobic010G099300--Sobic007G060600 Sobic001G081300 Sobic001G081300 Sobic010G099300--Sobic001G081300 Sobic001G437801 Sobic001G437801 Sobic010G099300--Sobic001G437801 Sobic001G049800 Sobic001G049800 Sobic010G099300--Sobic001G049800 Sobic010G099300--Sobic003G051500 Sobic001G395300 Sobic001G395300 Sobic010G099300--Sobic001G395300 Sobic006G271900 Sobic006G271900 Sobic010G099300--Sobic006G271900 Sobic002G078000 Sobic002G078000 Sobic005G022000--Sobic002G078000 Sobic001G104300 Sobic001G104300 Sobic005G022000--Sobic001G104300 Sobic002G363500 Sobic002G363500 Sobic005G022000--Sobic002G363500 Sobic006G281066 Sobic006G281066 Sobic005G022000--Sobic006G281066 Sobic005G022000--Sobic006G114300 Sobic007G026200 Sobic007G026200 Sobic005G022000--Sobic007G026200 Sobic005G022000--Sobic002G360200 Sobic007G166600 Sobic007G166600 Sobic005G022000--Sobic007G166600 Sobic001G389500 Sobic001G389500 Sobic005G022000--Sobic001G389500 Sobic003G136400--Sobic001G188600 Sobic001G215300 Sobic001G215300 Sobic003G136400--Sobic001G215300 Sobic001G357200 Sobic001G357200 Sobic003G136400--Sobic001G357200 Sobic003G136400--Sobic006G114300 Sobic001G172300 Sobic001G172300 Sobic003G136400--Sobic001G172300 Sobic003G136400--Sobic002G078000 Sobic003G136400--Sobic001G395300 Sobic006G249100 Sobic006G249100 Sobic003G136400--Sobic006G249100 Sobic002G190800 Sobic002G190800 Sobic003G136400--Sobic002G190800 Sobic001G391101 Sobic001G391101 Sobic003G051500--Sobic001G391101 Sobic001G001200 Sobic001G001200 Sobic003G051500--Sobic001G001200 Sobic005G028300 Sobic005G028300 Sobic003G051500--Sobic005G028300 Sobic003G051500--Sobic001G040600 Sobic003G051500--Sobic001G081300 Sobic003G419800 Sobic003G419800 Sobic003G051500--Sobic003G419800 Sobic003G051500--Sobic007G182600 Sobic003G051500--Sobic010G099300 Sobic003G051500--Sobic004G217900 Sobic003G237100--Sobic003G051500 Sobic003G237100--Sobic001G001200 Sobic003G237100--Sobic001G158400 Sobic003G237100--Sobic004G217900 Sobic003G237100--Sobic010G099300 Sobic009G253200 Sobic009G253200 Sobic003G237100--Sobic009G253200 Sobic003G237100--Sobic001G040600 Sobic003G237100--Sobic005G028300 Sobic005G011000 Sobic005G011000 Sobic003G237100--Sobic005G011000 Sobic001G390900--Sobic003G419800 Sobic001G390900--Sobic001G001200 Sobic001G390900--Sobic003G051500 Sobic001G390900--Sobic010G099300 Sobic001G390900--Sobic001G081300 Sobic010G083900 Sobic010G083900 Sobic001G390900--Sobic010G083900 Sobic001G322600 Sobic001G322600 Sobic001G390900--Sobic001G322600 Sobic001G390900--Sobic005G028300 Sobic002G240900 Sobic002G240900 Sobic001G390900--Sobic002G240900 Sobic006G232400 Sobic006G232400 Sobic001G441200--Sobic006G232400 Sobic003G165800 Sobic003G165800 Sobic001G441200--Sobic003G165800 Sobic001G441200--Sobic006G281066 Sobic001G441200--Sobic007G026200 Sobic004G214400 Sobic004G214400 Sobic001G441200--Sobic004G214400 Sobic002G189600 Sobic002G189600 Sobic001G441200--Sobic002G189600 Sobic002G141900 Sobic002G141900 Sobic001G441200--Sobic002G141900 Sobic004G070800 Sobic004G070800 Sobic001G441200--Sobic004G070800 Sobic002G140000 Sobic002G140000 Sobic001G441200--Sobic002G140000 Sobic009G155400 Sobic009G155400 Sobic004G217900--Sobic009G155400 Sobic008G163400 Sobic008G163400 Sobic004G217900--Sobic008G163400 Sobic009G116400 Sobic009G116400 Sobic004G217900--Sobic009G116400 Sobic001G187800 Sobic001G187800 Sobic004G217900--Sobic001G187800 Sobic008G099900 Sobic008G099900 Sobic004G217900--Sobic008G099900 Sobic004G217900--Sobic003G051500 Sobic004G241000 Sobic004G241000 Sobic004G217900--Sobic004G241000 Sobic010G190900 Sobic010G190900 Sobic004G217900--Sobic010G190900 Sobic001G149100 Sobic001G149100 Sobic004G217900--Sobic001G149100
Octagon: transcription factors


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