Gene annotation
Transcriptome id Sobic.006G281066.1
Synonym -
Functional annotation -
UniProt A0A1Z5RGU8
Pfam PF16953
Panther DB PTHR13547 PTHR13547:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G32230 : proteinaceous RNase P 1
RAP-DB (Rice) LOC_Os04g59600.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a010574
Brachypodium KQJ85519
Barley HORVU2Hr1G127250.2 , HORVU2Hr1G127250.9
Wheat TraesCS2D02G569800 , TraesCS2A02G560400
Populus PNT31978 , PNT31979 , PNT40034 , PNS96895


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G214400 tic20, putative, expressed -
2 Sobic.001G104300 differentiation protein, putative, expressed K09761: 16S rRNA (uracil1498-N3)-methyltransferase
3 Sobic.001G543700 palmitoyl-protein thioesterase 1 precursor, putative, expressed K01074: palmitoyl-protein thioesterase
4 Sobic.002G363500 RNA methyltransferase, TrmH family protein, putative, expressed -
5 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
6 Sobic.003G236300 tat pathway signal sequence family protein, expressed -
7 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
8 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
9 Sobic.001G321400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCB2, putative, expressed -
10 Sobic.002G141900 -(PubMedID : 26976818)@Citrate transporter protein, putative, expressed -
11 Sobic.007G026200 heat shock protein DnaJ, putative, expressed -
12 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
13 Sobic.004G109000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chalcone isomerase 3, putative, expressed -
14 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
15 Sobic.005G022000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Mpv17 / PMP22 family domain containing protein, expressed K13347: PXMP2, peroxisomal membrane protein 2
16 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
17 Sobic.002G124100 - -
18 Sobic.001G441200 translocase of chloroplast 34, putative, expressed -
19 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
20 Sobic.003G165800 UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphor yl-undecaprenol N-acetylglucosamine transferase, putative, expressed K02563: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase


Gene co-expression network
sample Sobic006G281066 Sobic006G281066 Sobic004G214400 Sobic004G214400 Sobic006G281066--Sobic004G214400 Sobic001G104300 Sobic001G104300 Sobic006G281066--Sobic001G104300 Sobic001G543700 Sobic001G543700 Sobic006G281066--Sobic001G543700 Sobic002G363500 Sobic002G363500 Sobic006G281066--Sobic002G363500 Sobic001G395300 Sobic001G395300 Sobic006G281066--Sobic001G395300 Sobic003G236300 Sobic003G236300 Sobic006G281066--Sobic003G236300 Sobic010G027200 Sobic010G027200 Sobic006G281066--Sobic010G027200 Sobic002G140000 Sobic002G140000 Sobic006G281066--Sobic002G140000 Sobic001G321400 Sobic001G321400 Sobic006G281066--Sobic001G321400 Sobic001G375000 Sobic001G375000 Sobic004G214400--Sobic001G375000 Sobic004G263200 Sobic004G263200 Sobic004G214400--Sobic004G263200 Sobic004G214400--Sobic006G281066 Sobic007G101300 Sobic007G101300 Sobic004G214400--Sobic007G101300 Sobic006G088000 Sobic006G088000 Sobic004G214400--Sobic006G088000 Sobic001G433100 Sobic001G433100 Sobic004G214400--Sobic001G433100 Sobic004G214400--Sobic010G027200 Sobic006G237100 Sobic006G237100 Sobic004G214400--Sobic006G237100 Sobic004G003900 Sobic004G003900 Sobic004G214400--Sobic004G003900 Sobic002G078000 Sobic002G078000 Sobic001G104300--Sobic002G078000 Sobic001G104300--Sobic006G281066 Sobic005G022000 Sobic005G022000 Sobic001G104300--Sobic005G022000 Sobic003G165800 Sobic003G165800 Sobic001G104300--Sobic003G165800 Sobic004G070800 Sobic004G070800 Sobic001G104300--Sobic004G070800 Sobic001G013900 Sobic001G013900 Sobic001G104300--Sobic001G013900 Sobic003G333700 Sobic003G333700 Sobic001G104300--Sobic003G333700 Sobic010G134500 Sobic010G134500 Sobic001G104300--Sobic010G134500 Sobic004G109000 Sobic004G109000 Sobic001G104300--Sobic004G109000 Sobic010G221600 Sobic010G221600 Sobic001G543700--Sobic010G221600 Sobic001G543700--Sobic004G214400 Sobic001G543700--Sobic006G281066 Sobic001G543700--Sobic003G236300 Sobic006G082500 Sobic006G082500 Sobic001G543700--Sobic006G082500 Sobic004G296800 Sobic004G296800 Sobic001G543700--Sobic004G296800 Sobic003G071600 Sobic003G071600 Sobic001G543700--Sobic003G071600 Sobic003G265500 Sobic003G265500 Sobic001G543700--Sobic003G265500 Sobic001G478600 Sobic001G478600 Sobic001G543700--Sobic001G478600 Sobic002G363500--Sobic006G281066 Sobic002G363500--Sobic005G022000 Sobic002G363500--Sobic001G395300 Sobic001G437200 Sobic001G437200 Sobic002G363500--Sobic001G437200 Sobic002G363500--Sobic001G104300 Sobic003G298400 Sobic003G298400 Sobic002G363500--Sobic003G298400 Sobic002G363500--Sobic010G134500 Sobic002G363500--Sobic003G165800 Sobic002G363500--Sobic006G237100 Sobic009G137000 Sobic009G137000 Sobic001G395300--Sobic009G137000 Sobic002G404900 Sobic002G404900 Sobic001G395300--Sobic002G404900 Sobic001G228300 Sobic001G228300 Sobic001G395300--Sobic001G228300 Sobic001G395300--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic001G395300--Sobic006G263800 Sobic001G395300--Sobic002G140000 Sobic006G204100 Sobic006G204100 Sobic001G395300--Sobic006G204100 Sobic007G116100 Sobic007G116100 Sobic001G395300--Sobic007G116100 Sobic001G395300--Sobic010G027200 Sobic002G124100 Sobic002G124100 Sobic003G236300--Sobic002G124100 Sobic003G236300--Sobic006G281066 Sobic008G130700 Sobic008G130700 Sobic003G236300--Sobic008G130700 Sobic003G236300--Sobic001G543700 Sobic003G236300--Sobic006G263800 Sobic002G190100 Sobic002G190100 Sobic003G236300--Sobic002G190100 Sobic005G141000 Sobic005G141000 Sobic003G236300--Sobic005G141000 Sobic009G001500 Sobic009G001500 Sobic003G236300--Sobic009G001500 Sobic003G236300--Sobic004G109000 Sobic010G027200--Sobic002G140000 Sobic010G027200--Sobic001G375000 Sobic001G099000 Sobic001G099000 Sobic010G027200--Sobic001G099000 Sobic010G027200--Sobic007G116100 Sobic010G027200--Sobic006G237100 Sobic007G015300 Sobic007G015300 Sobic010G027200--Sobic007G015300 Sobic005G184300 Sobic005G184300 Sobic010G027200--Sobic005G184300 Sobic004G338300 Sobic004G338300 Sobic010G027200--Sobic004G338300 Sobic009G104700 Sobic009G104700 Sobic010G027200--Sobic009G104700 Sobic002G140000--Sobic010G027200 Sobic002G140000--Sobic007G116100 Sobic002G140000--Sobic007G015300 Sobic005G022800 Sobic005G022800 Sobic002G140000--Sobic005G022800 Sobic002G140000--Sobic006G237100 Sobic002G140000--Sobic006G263800 Sobic002G140000--Sobic001G099000 Sobic002G140000--Sobic001G375000 Sobic002G140000--Sobic001G321400 Sobic001G321400--Sobic002G140000 Sobic001G321400--Sobic010G027200 Sobic001G321400--Sobic006G263800 Sobic001G321400--Sobic007G116100 Sobic004G255500 Sobic004G255500 Sobic001G321400--Sobic004G255500 Sobic001G321400--Sobic006G281066 Sobic001G321400--Sobic006G237100 Sobic001G321400--Sobic007G015300 Sobic001G321400--Sobic001G395300
Octagon: transcription factors


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