Gene annotation
Transcriptome id Sobic.001G104300.3,Sobic.001G104300.4,Sobic.001G104300.1,Sobic.001G104300.5
Synonym Sb01g009310
Functional annotation differentiation protein, putative, expressed
UniProt C5WLZ9 , A0A1Z5S5H4
Pfam PF04452
Panther DB PTHR30027 PTHR30027:SF4
NCBI CDD -
KEGG Orthology K09761; 16S rRNA (uracil1498-N3)-methyltransferase
Gene Ontology GO:0008168; methyltransferase activity GO:0006364rRNA processing


Orthologs (automatic annotation)
TAIR AT1G50000 : methyltransferases
RAP-DB (Rice) LOC_Os03g51984.1 : differentiation protein, putative, expressed
MaizeGDB (Corn) Zm00025a016882
Brachypodium KQK13395
Barley HORVU4Hr1G010020.4 , HORVU4Hr1G010020.7 , HORVU4Hr1G010020.6 , HORVU4Hr1G010020.1 , HORVU4Hr1G010020.9
Wheat TraesCS4D02G059400 , TraesCS4B02G059600 , TraesCS4B02G059600 , TraesCS4A02G255300
Populus -


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cDNA sequences
Sobic.001G104300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G078000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KHG/KDPG aldolase, putative, expressed -
2 Sobic.006G281066 - -
3 Sobic.005G022000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Mpv17 / PMP22 family domain containing protein, expressed K13347: PXMP2, peroxisomal membrane protein 2
4 Sobic.003G165800 UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphor yl-undecaprenol N-acetylglucosamine transferase, putative, expressed K02563: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
5 Sobic.004G070800 tic21, putative, expressed -
6 Sobic.001G013900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, expressed -
7 Sobic.003G333700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine synthase, chloroplast precursor, putative, expressed K01738: cysteine synthase
8 Sobic.010G134500 exonuclease, putative, expressed -
9 Sobic.004G109000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chalcone isomerase 3, putative, expressed -
10 Sobic.002G141900 -(PubMedID : 26976818)@Citrate transporter protein, putative, expressed -
11 Sobic.002G363500 RNA methyltransferase, TrmH family protein, putative, expressed -
12 Sobic.007G026200 heat shock protein DnaJ, putative, expressed -
13 Sobic.007G166600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@copper/zinc superoxide dismutase, putative, expressed K04565: superoxide dismutase, Cu-Zn family
14 Sobic.003G223000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
16 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
17 Sobic.003G383500 rhodanese-like, putative, expressed -
18 Sobic.001G215300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed -
19 Sobic.009G231100 3-deoxy-manno-octulosonate cytidylyltransferase, putative, expressed K00979: 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase)
20 Sobic.003G420900 S-formylglutathione hydrolase, putative, expressed K01070: frmB, ESD, S-formylglutathione hydrolase


Gene co-expression network
sample Sobic001G104300 Sobic001G104300 Sobic002G078000 Sobic002G078000 Sobic001G104300--Sobic002G078000 Sobic006G281066 Sobic006G281066 Sobic001G104300--Sobic006G281066 Sobic005G022000 Sobic005G022000 Sobic001G104300--Sobic005G022000 Sobic003G165800 Sobic003G165800 Sobic001G104300--Sobic003G165800 Sobic004G070800 Sobic004G070800 Sobic001G104300--Sobic004G070800 Sobic001G013900 Sobic001G013900 Sobic001G104300--Sobic001G013900 Sobic003G333700 Sobic003G333700 Sobic001G104300--Sobic003G333700 Sobic010G134500 Sobic010G134500 Sobic001G104300--Sobic010G134500 Sobic004G109000 Sobic004G109000 Sobic001G104300--Sobic004G109000 Sobic002G078000--Sobic001G013900 Sobic002G078000--Sobic003G333700 Sobic002G078000--Sobic001G104300 Sobic002G078000--Sobic005G022000 Sobic003G223000 Sobic003G223000 Sobic002G078000--Sobic003G223000 Sobic002G360200 Sobic002G360200 Sobic002G078000--Sobic002G360200 Sobic001G188600 Sobic001G188600 Sobic002G078000--Sobic001G188600 Sobic010G012900 Sobic010G012900 Sobic002G078000--Sobic010G012900 Sobic002G078000--Sobic004G109000 Sobic004G214400 Sobic004G214400 Sobic006G281066--Sobic004G214400 Sobic006G281066--Sobic001G104300 Sobic001G543700 Sobic001G543700 Sobic006G281066--Sobic001G543700 Sobic002G363500 Sobic002G363500 Sobic006G281066--Sobic002G363500 Sobic001G395300 Sobic001G395300 Sobic006G281066--Sobic001G395300 Sobic003G236300 Sobic003G236300 Sobic006G281066--Sobic003G236300 Sobic010G027200 Sobic010G027200 Sobic006G281066--Sobic010G027200 Sobic002G140000 Sobic002G140000 Sobic006G281066--Sobic002G140000 Sobic001G321400 Sobic001G321400 Sobic006G281066--Sobic001G321400 Sobic005G022000--Sobic002G078000 Sobic005G022000--Sobic001G104300 Sobic005G022000--Sobic002G363500 Sobic005G022000--Sobic006G281066 Sobic006G114300 Sobic006G114300 Sobic005G022000--Sobic006G114300 Sobic007G026200 Sobic007G026200 Sobic005G022000--Sobic007G026200 Sobic005G022000--Sobic002G360200 Sobic007G166600 Sobic007G166600 Sobic005G022000--Sobic007G166600 Sobic001G389500 Sobic001G389500 Sobic005G022000--Sobic001G389500 Sobic003G165800--Sobic001G104300 Sobic002G141900 Sobic002G141900 Sobic003G165800--Sobic002G141900 Sobic003G420900 Sobic003G420900 Sobic003G165800--Sobic003G420900 Sobic001G021500 Sobic001G021500 Sobic003G165800--Sobic001G021500 Sobic001G441200 Sobic001G441200 Sobic003G165800--Sobic001G441200 Sobic003G165800--Sobic006G281066 Sobic003G165800--Sobic005G022000 Sobic009G055900 Sobic009G055900 Sobic003G165800--Sobic009G055900 Sobic003G165800--Sobic002G363500 Sobic003G383500 Sobic003G383500 Sobic004G070800--Sobic003G383500 Sobic007G013400 Sobic007G013400 Sobic004G070800--Sobic007G013400 Sobic004G070800--Sobic004G109000 Sobic004G015700 Sobic004G015700 Sobic004G070800--Sobic004G015700 Sobic001G357200 Sobic001G357200 Sobic004G070800--Sobic001G357200 Sobic003G261200 Sobic003G261200 Sobic004G070800--Sobic003G261200 Sobic004G070800--Sobic001G104300 Sobic007G211100 Sobic007G211100 Sobic004G070800--Sobic007G211100 Sobic004G070800--Sobic006G114300 Sobic001G013900--Sobic002G360200 Sobic001G013900--Sobic002G078000 Sobic001G013900--Sobic003G333700 Sobic002G272400 Sobic002G272400 Sobic001G013900--Sobic002G272400 Sobic001G013900--Sobic001G104300 Sobic001G013900--Sobic001G188600 Sobic001G172300 Sobic001G172300 Sobic001G013900--Sobic001G172300 Sobic004G338300 Sobic004G338300 Sobic001G013900--Sobic004G338300 Sobic008G058000 Sobic008G058000 Sobic001G013900--Sobic008G058000 Sobic003G333700--Sobic002G078000 Sobic003G333700--Sobic003G223000 Sobic003G333700--Sobic001G013900 Sobic003G333700--Sobic001G104300 Sobic003G333700--Sobic004G109000 Sobic001G164500 Sobic001G164500 Sobic003G333700--Sobic001G164500 Sobic001G165801 Sobic001G165801 Sobic003G333700--Sobic001G165801 Sobic003G333700--Sobic001G188600 Sobic001G379100 Sobic001G379100 Sobic003G333700--Sobic001G379100 Sobic009G210100 Sobic009G210100 Sobic010G134500--Sobic009G210100 Sobic010G134500--Sobic001G104300 Sobic010G134500--Sobic002G078000 Sobic007G070000 Sobic007G070000 Sobic010G134500--Sobic007G070000 Sobic003G267500 Sobic003G267500 Sobic010G134500--Sobic003G267500 Sobic010G134500--Sobic003G420900 Sobic010G134500--Sobic005G022000 Sobic010G134500--Sobic002G363500 Sobic001G161400 Sobic001G161400 Sobic010G134500--Sobic001G161400 Sobic004G109000--Sobic001G188600 Sobic004G109000--Sobic007G211100 Sobic004G109000--Sobic006G114300 Sobic004G109000--Sobic003G383500 Sobic009G059100 Sobic009G059100 Sobic004G109000--Sobic009G059100 Sobic001G069500 Sobic001G069500 Sobic004G109000--Sobic001G069500 Sobic006G025700 Sobic006G025700 Sobic004G109000--Sobic006G025700 Sobic004G109000--Sobic007G013400 Sobic001G215300 Sobic001G215300 Sobic004G109000--Sobic001G215300
Octagon: transcription factors


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