Gene annotation
Transcriptome id Sobic.001G215300.1,Sobic.001G215300.2
Synonym Sb01g018970
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
aminotransferase, classes I and II, domain containing protein, expressed
UniProt A0A1Z5S7A2 , C5WYB6
Pfam PF01053
Panther DB PTHR11751 PTHR11751:SF388
NCBI CDD KOG0257; Kynurenine aminotransferase, glutamine transaminase K
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G77670 : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
RAP-DB (Rice) LOC_Os10g34350.1 : aminotransferase, classes I and II, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a017587
Brachypodium PNT67580 , KQJ97171 , KQJ97172 , PNT67577 , PNT67579 , PNT67578
Barley HORVU1Hr1G042490.21 , HORVU1Hr1G042490.20 , HORVU1Hr1G042490.8 , HORVU1Hr1G042490.9 , HORVU1Hr1G042490.6 , HORVU1Hr1G042490.7 , HORVU1Hr1G042490.4 , HORVU1Hr1G042490.5 , HORVU1Hr1G042490.2 , HORVU1Hr1G042490.3 , HORVU1Hr1G042490.15 , HORVU1Hr1G042490.1 , HORVU1Hr1G042490.14 , HORVU1Hr1G042490.16 , HORVU1Hr1G042490.17 , HORVU1Hr1G042490.10 , HORVU1Hr1G042490.11 , HORVU1Hr1G042490.12 , HORVU1Hr1G042490.13 , HORVU1Hr1G042490.18 , HORVU1Hr1G042490.19
Wheat TraesCS1B02G176400 , TraesCS1D02G157400 , TraesCS1A02G160200 , TraesCS1A02G160200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G109000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chalcone isomerase 3, putative, expressed -
2 Sobic.001G142400 RIO1 family protein, expressed -
3 Sobic.002G064400 expressed protein -
4 Sobic.002G190100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.008G130700 expressed protein -
6 Sobic.001G236800 tRNA methyltransferase, putative, expressed K00927: PGK, phosphoglycerate kinase
7 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
8 Sobic.007G090415 - -
9 Sobic.006G114300 pentatricopeptide, putative, expressed -
10 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
11 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
12 Sobic.003G136400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
13 Sobic.006G060500 expressed protein -
14 Sobic.005G022800 GTP binding protein, putative, expressed -
15 Sobic.003G383500 rhodanese-like, putative, expressed -
16 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
17 Sobic.008G008500 protein phosphatase 2c, putative, expressed -
18 Sobic.006G025700 - -
19 Sobic.004G015700 serine/threonine-protein kinase receptor precursor, putative, expressed -
20 Sobic.003G042100 MAR-binding filament-like protein 1, putative, expressed -


Gene co-expression network
sample Sobic001G215300 Sobic001G215300 Sobic004G109000 Sobic004G109000 Sobic001G215300--Sobic004G109000 Sobic001G142400 Sobic001G142400 Sobic001G215300--Sobic001G142400 Sobic002G064400 Sobic002G064400 Sobic001G215300--Sobic002G064400 Sobic002G190100 Sobic002G190100 Sobic001G215300--Sobic002G190100 Sobic008G130700 Sobic008G130700 Sobic001G215300--Sobic008G130700 Sobic001G236800 Sobic001G236800 Sobic001G215300--Sobic001G236800 Sobic001G188600 Sobic001G188600 Sobic001G215300--Sobic001G188600 Sobic007G090415 Sobic007G090415 Sobic001G215300--Sobic007G090415 Sobic006G114300 Sobic006G114300 Sobic001G215300--Sobic006G114300 Sobic004G109000--Sobic001G188600 Sobic007G211100 Sobic007G211100 Sobic004G109000--Sobic007G211100 Sobic004G109000--Sobic006G114300 Sobic003G383500 Sobic003G383500 Sobic004G109000--Sobic003G383500 Sobic009G059100 Sobic009G059100 Sobic004G109000--Sobic009G059100 Sobic001G069500 Sobic001G069500 Sobic004G109000--Sobic001G069500 Sobic006G025700 Sobic006G025700 Sobic004G109000--Sobic006G025700 Sobic007G013400 Sobic007G013400 Sobic004G109000--Sobic007G013400 Sobic004G109000--Sobic001G215300 Sobic006G263800 Sobic006G263800 Sobic001G142400--Sobic006G263800 Sobic005G084000 Sobic005G084000 Sobic001G142400--Sobic005G084000 Sobic001G142400--Sobic001G215300 Sobic001G142400--Sobic002G190100 Sobic005G022800 Sobic005G022800 Sobic001G142400--Sobic005G022800 Sobic007G201400 Sobic007G201400 Sobic001G142400--Sobic007G201400 Sobic008G021700 Sobic008G021700 Sobic001G142400--Sobic008G021700 Sobic001G142400--Sobic001G236800 Sobic002G140000 Sobic002G140000 Sobic001G142400--Sobic002G140000 Sobic008G008500 Sobic008G008500 Sobic002G064400--Sobic008G008500 Sobic002G064400--Sobic002G190100 Sobic002G064400--Sobic001G215300 Sobic002G064400--Sobic001G236800 Sobic009G083300 Sobic009G083300 Sobic002G064400--Sobic009G083300 Sobic007G206100 Sobic007G206100 Sobic002G064400--Sobic007G206100 Sobic002G242600 Sobic002G242600 Sobic002G064400--Sobic002G242600 Sobic002G064400--Sobic001G142400 Sobic004G015700 Sobic004G015700 Sobic002G064400--Sobic004G015700 Sobic002G190100--Sobic006G025700 Sobic002G190100--Sobic006G263800 Sobic002G190100--Sobic008G130700 Sobic002G190100--Sobic002G242600 Sobic001G027600 Sobic001G027600 Sobic002G190100--Sobic001G027600 Sobic004G044000 Sobic004G044000 Sobic002G190100--Sobic004G044000 Sobic004G253800 Sobic004G253800 Sobic002G190100--Sobic004G253800 Sobic002G190100--Sobic009G059100 Sobic001G120000 Sobic001G120000 Sobic002G190100--Sobic001G120000 Sobic008G130700--Sobic007G090415 Sobic008G130700--Sobic002G190100 Sobic008G130700--Sobic006G025700 Sobic003G157500 Sobic003G157500 Sobic008G130700--Sobic003G157500 Sobic003G176200 Sobic003G176200 Sobic008G130700--Sobic003G176200 Sobic005G020200 Sobic005G020200 Sobic008G130700--Sobic005G020200 Sobic005G141000 Sobic005G141000 Sobic008G130700--Sobic005G141000 Sobic008G130700--Sobic008G008500 Sobic008G130700--Sobic001G215300 Sobic001G236800--Sobic004G015700 Sobic001G236800--Sobic002G064400 Sobic001G236800--Sobic001G142400 Sobic001G236800--Sobic001G215300 Sobic001G236800--Sobic007G206100 Sobic001G236800--Sobic008G008500 Sobic004G151900 Sobic004G151900 Sobic001G236800--Sobic004G151900 Sobic004G246800 Sobic004G246800 Sobic001G236800--Sobic004G246800 Sobic010G157700 Sobic010G157700 Sobic001G236800--Sobic010G157700 Sobic001G188600--Sobic001G069500 Sobic001G188600--Sobic006G114300 Sobic001G357200 Sobic001G357200 Sobic001G188600--Sobic001G357200 Sobic009G098100 Sobic009G098100 Sobic001G188600--Sobic009G098100 Sobic010G012900 Sobic010G012900 Sobic001G188600--Sobic010G012900 Sobic001G188600--Sobic004G109000 Sobic001G188600--Sobic007G211100 Sobic001G188600--Sobic004G253800 Sobic008G030000 Sobic008G030000 Sobic001G188600--Sobic008G030000 Sobic007G090415--Sobic008G130700 Sobic001G275800 Sobic001G275800 Sobic007G090415--Sobic001G275800 Sobic007G090415--Sobic005G141000 Sobic005G203600 Sobic005G203600 Sobic007G090415--Sobic005G203600 Sobic007G090415--Sobic002G190100 Sobic007G090415--Sobic005G020200 Sobic007G123200 Sobic007G123200 Sobic007G090415--Sobic007G123200 Sobic007G090415--Sobic008G008500 Sobic007G090415--Sobic001G215300 Sobic006G114300--Sobic001G188600 Sobic006G114300--Sobic001G357200 Sobic006G114300--Sobic004G109000 Sobic006G114300--Sobic001G069500 Sobic006G114300--Sobic010G012900 Sobic006G114300--Sobic003G383500 Sobic006G114300--Sobic004G253800 Sobic006G114300--Sobic007G211100 Sobic006G114300--Sobic007G013400
Octagon: transcription factors


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