Gene annotation
Transcriptome id Sobic.007G211100.2,Sobic.007G211100.4,Sobic.007G211100.3,Sobic.007G211100.5
Synonym AGL26, Sb07g027830
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
RNA methyltransferase, TrmH family protein, putative, expressed
UniProt A0A1Z5RB05 , A0A1Z5RAZ2 , A0A1Z5RBT1
Pfam PF00588
Panther DB PTHR12029 PTHR12029:SF31
NCBI CDD -
KEGG Orthology K03216; trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
Gene Ontology GO:0008173; RNA methyltransferase activity GO:0006396RNA processing GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT5G26880 : AGAMOUS-like 26
RAP-DB (Rice) LOC_Os08g39600.1 : RNA methyltransferase, TrmH family protein, putative, expressed
MaizeGDB (Corn) Zm00025a005087
Brachypodium KQJ98911
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G069500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
2 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
3 Sobic.003G383500 rhodanese-like, putative, expressed -
4 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
5 Sobic.004G109000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chalcone isomerase 3, putative, expressed -
6 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
7 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
8 Sobic.008G123600 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
9 Sobic.009G098100 T-complex protein, putative, expressed -
10 Sobic.003G261200 formyl transferase, putative, expressed K00604: MTFMT, methionyl-tRNA formyltransferase
11 Sobic.001G357200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
12 Sobic.008G030000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@elongation factor P, putative, expressed K02356: elongation factor P
13 Sobic.006G114300 pentatricopeptide, putative, expressed -
14 Sobic.009G130800 tat pathway signal sequence family protein, expressed -
15 Sobic.010G011200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
16 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
17 Sobic.003G383600 - -
18 Sobic.005G110481 - -
19 Sobic.010G012900 superoxide dismutase, chloroplast, putative, expressed K04564: superoxide dismutase, Fe-Mn family
20 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic007G211100 Sobic007G211100 Sobic001G069500 Sobic001G069500 Sobic007G211100--Sobic001G069500 Sobic007G013400 Sobic007G013400 Sobic007G211100--Sobic007G013400 Sobic003G383500 Sobic003G383500 Sobic007G211100--Sobic003G383500 Sobic009G001500 Sobic009G001500 Sobic007G211100--Sobic009G001500 Sobic004G109000 Sobic004G109000 Sobic007G211100--Sobic004G109000 Sobic001G188600 Sobic001G188600 Sobic007G211100--Sobic001G188600 Sobic003G295800 Sobic003G295800 Sobic007G211100--Sobic003G295800 Sobic008G123600 Sobic008G123600 Sobic007G211100--Sobic008G123600 Sobic009G098100 Sobic009G098100 Sobic007G211100--Sobic009G098100 Sobic001G069500--Sobic009G098100 Sobic001G069500--Sobic001G188600 Sobic001G069500--Sobic007G211100 Sobic001G069500--Sobic003G295800 Sobic003G383600 Sobic003G383600 Sobic001G069500--Sobic003G383600 Sobic001G069500--Sobic008G123600 Sobic001G069500--Sobic009G001500 Sobic008G030000 Sobic008G030000 Sobic001G069500--Sobic008G030000 Sobic001G069500--Sobic007G013400 Sobic007G013400--Sobic003G383500 Sobic007G013400--Sobic003G295800 Sobic007G013400--Sobic009G001500 Sobic003G261200 Sobic003G261200 Sobic007G013400--Sobic003G261200 Sobic001G475600 Sobic001G475600 Sobic007G013400--Sobic001G475600 Sobic002G251400 Sobic002G251400 Sobic007G013400--Sobic002G251400 Sobic007G013400--Sobic003G383600 Sobic001G040000 Sobic001G040000 Sobic007G013400--Sobic001G040000 Sobic007G013400--Sobic007G211100 Sobic003G383500--Sobic007G013400 Sobic003G383500--Sobic009G001500 Sobic003G383500--Sobic003G295800 Sobic003G383500--Sobic007G211100 Sobic003G383500--Sobic003G261200 Sobic004G044000 Sobic004G044000 Sobic003G383500--Sobic004G044000 Sobic003G383500--Sobic003G383600 Sobic005G110481 Sobic005G110481 Sobic003G383500--Sobic005G110481 Sobic003G383500--Sobic004G109000 Sobic009G001500--Sobic007G013400 Sobic009G001500--Sobic003G383500 Sobic009G001500--Sobic003G295800 Sobic004G044200 Sobic004G044200 Sobic009G001500--Sobic004G044200 Sobic009G001500--Sobic004G044000 Sobic009G001500--Sobic003G383600 Sobic009G001500--Sobic007G211100 Sobic009G001500--Sobic008G030000 Sobic001G383900 Sobic001G383900 Sobic009G001500--Sobic001G383900 Sobic004G109000--Sobic001G188600 Sobic004G109000--Sobic007G211100 Sobic006G114300 Sobic006G114300 Sobic004G109000--Sobic006G114300 Sobic004G109000--Sobic003G383500 Sobic009G059100 Sobic009G059100 Sobic004G109000--Sobic009G059100 Sobic004G109000--Sobic001G069500 Sobic006G025700 Sobic006G025700 Sobic004G109000--Sobic006G025700 Sobic004G109000--Sobic007G013400 Sobic001G215300 Sobic001G215300 Sobic004G109000--Sobic001G215300 Sobic001G188600--Sobic001G069500 Sobic001G188600--Sobic006G114300 Sobic001G357200 Sobic001G357200 Sobic001G188600--Sobic001G357200 Sobic001G188600--Sobic009G098100 Sobic010G012900 Sobic010G012900 Sobic001G188600--Sobic010G012900 Sobic001G188600--Sobic004G109000 Sobic001G188600--Sobic007G211100 Sobic004G253800 Sobic004G253800 Sobic001G188600--Sobic004G253800 Sobic001G188600--Sobic008G030000 Sobic003G295800--Sobic007G013400 Sobic003G295800--Sobic009G001500 Sobic003G295800--Sobic001G040000 Sobic004G317900 Sobic004G317900 Sobic003G295800--Sobic004G317900 Sobic003G295800--Sobic009G098100 Sobic001G017000 Sobic001G017000 Sobic003G295800--Sobic001G017000 Sobic001G027600 Sobic001G027600 Sobic003G295800--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic003G295800--Sobic001G453300 Sobic003G295800--Sobic003G383500 Sobic004G076000 Sobic004G076000 Sobic008G123600--Sobic004G076000 Sobic008G123600--Sobic003G383600 Sobic001G003600 Sobic001G003600 Sobic008G123600--Sobic001G003600 Sobic001G323801 Sobic001G323801 Sobic008G123600--Sobic001G323801 Sobic008G123600--Sobic001G069500 Sobic001G435600 Sobic001G435600 Sobic008G123600--Sobic001G435600 Sobic009G115050 Sobic009G115050 Sobic008G123600--Sobic009G115050 Sobic008G123600--Sobic003G295800 Sobic006G172700 Sobic006G172700 Sobic008G123600--Sobic006G172700 Sobic009G098100--Sobic001G069500 Sobic009G098100--Sobic003G295800 Sobic009G098100--Sobic001G188600 Sobic009G098100--Sobic001G453300 Sobic009G098100--Sobic001G383900 Sobic009G098100--Sobic001G027600 Sobic009G098100--Sobic008G030000 Sobic009G098100--Sobic004G076000 Sobic002G020100 Sobic002G020100 Sobic009G098100--Sobic002G020100
Octagon: transcription factors


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