Gene annotation
Transcriptome id Sobic.001G236800.3,Sobic.001G236800.4,Sobic.001G236800.1,Sobic.001G236800.2
Synonym Sb01g020930, PGK1
Functional annotation tRNA methyltransferase, putative, expressed
UniProt A0A1Z5S711 , A0A1Z5S735 , C5X0G8 , A0A1Z5S714
Pfam PF02390 PF00162
Panther DB PTHR11406 PTHR11406:SF13
NCBI CDD KOG1367; 3-phosphoglycerate kinase
KEGG Orthology K00927; PGK, phosphoglycerate kinase
Gene Ontology GO:0008176; tRNA (guanine-N7-)-methyltransferase activity GO:0006400tRNA modification GO:0006096glycolytic process GO:0004618phosphoglycerate kinase activity


Orthologs (automatic annotation)
TAIR AT3G12780 : phosphoglycerate kinase 1
RAP-DB (Rice) LOC_Os10g30550.1 : tRNA methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a006793
Brachypodium KQJ96880
Barley HORVU1Hr1G036980.2 , HORVU1Hr1G036980.1 , HORVU1Hr1G036990.23 , HORVU1Hr1G036990.22 , HORVU1Hr1G036990.21 , HORVU1Hr1G036990.20 , HORVU1Hr1G036990.26 , HORVU1Hr1G036990.24 , HORVU1Hr1G036990.18 , HORVU1Hr1G036990.19 , HORVU1Hr1G036990.12 , HORVU1Hr1G036990.13 , HORVU1Hr1G036990.10 , HORVU1Hr1G036990.11 , HORVU1Hr1G036990.16 , HORVU1Hr1G036990.17 , HORVU1Hr1G036990.14 , HORVU1Hr1G036990.15 , HORVU1Hr1G036990.1 , HORVU1Hr1G036990.2 , HORVU1Hr1G036990.3 , HORVU1Hr1G036990.4 , HORVU1Hr1G036990.5 , HORVU1Hr1G036990.6 , HORVU1Hr1G036990.7 , HORVU1Hr1G036990.8 , HORVU1Hr1G036990.9
Wheat TraesCS1D02G139800 , TraesCS1B02G157400 , TraesCS1A02G140900 , TraesCS1A02G140900 , TraesCS1D02G139800 , TraesCS1D02G139800 , TraesCS1D02G139800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G015700 serine/threonine-protein kinase receptor precursor, putative, expressed -
2 Sobic.002G064400 expressed protein -
3 Sobic.001G142400 RIO1 family protein, expressed -
4 Sobic.001G215300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed -
5 Sobic.007G206100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
6 Sobic.008G008500 protein phosphatase 2c, putative, expressed -
7 Sobic.004G151900 - -
8 Sobic.004G246800 pentatricopeptide, putative, expressed -
9 Sobic.010G157700 expressed protein -
10 Sobic.009G083300 white-brown complex homolog protein 12, putative, expressed -
11 Sobic.008G021700 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
12 Sobic.007G210600 ABC transporter, ATP-binding protein, putative, expressed -
13 Sobic.003G042100 MAR-binding filament-like protein 1, putative, expressed -
14 Sobic.001G495300 expressed protein -
15 Sobic.008G125100 Mur ligase family protein, putative, expressed -
16 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
17 Sobic.008G131700 PsbP, putative, expressed -
18 Sobic.002G209600 CBS domain containing protein, expressed -
19 Sobic.005G084000 expressed protein -
20 Sobic.003G074700 thylakoid lumenal protein, putative, expressed -


Gene co-expression network
sample Sobic001G236800 Sobic001G236800 Sobic004G015700 Sobic004G015700 Sobic001G236800--Sobic004G015700 Sobic002G064400 Sobic002G064400 Sobic001G236800--Sobic002G064400 Sobic001G142400 Sobic001G142400 Sobic001G236800--Sobic001G142400 Sobic001G215300 Sobic001G215300 Sobic001G236800--Sobic001G215300 Sobic007G206100 Sobic007G206100 Sobic001G236800--Sobic007G206100 Sobic008G008500 Sobic008G008500 Sobic001G236800--Sobic008G008500 Sobic004G151900 Sobic004G151900 Sobic001G236800--Sobic004G151900 Sobic004G246800 Sobic004G246800 Sobic001G236800--Sobic004G246800 Sobic010G157700 Sobic010G157700 Sobic001G236800--Sobic010G157700 Sobic006G263800 Sobic006G263800 Sobic004G015700--Sobic006G263800 Sobic003G383500 Sobic003G383500 Sobic004G015700--Sobic003G383500 Sobic009G083300 Sobic009G083300 Sobic004G015700--Sobic009G083300 Sobic007G013400 Sobic007G013400 Sobic004G015700--Sobic007G013400 Sobic001G099000 Sobic001G099000 Sobic004G015700--Sobic001G099000 Sobic004G015700--Sobic001G236800 Sobic002G190100 Sobic002G190100 Sobic004G015700--Sobic002G190100 Sobic009G212000 Sobic009G212000 Sobic004G015700--Sobic009G212000 Sobic003G261200 Sobic003G261200 Sobic004G015700--Sobic003G261200 Sobic002G064400--Sobic008G008500 Sobic002G064400--Sobic002G190100 Sobic002G064400--Sobic001G215300 Sobic002G064400--Sobic001G236800 Sobic002G064400--Sobic009G083300 Sobic002G064400--Sobic007G206100 Sobic002G242600 Sobic002G242600 Sobic002G064400--Sobic002G242600 Sobic002G064400--Sobic001G142400 Sobic002G064400--Sobic004G015700 Sobic001G142400--Sobic006G263800 Sobic005G084000 Sobic005G084000 Sobic001G142400--Sobic005G084000 Sobic001G142400--Sobic001G215300 Sobic001G142400--Sobic002G190100 Sobic005G022800 Sobic005G022800 Sobic001G142400--Sobic005G022800 Sobic007G201400 Sobic007G201400 Sobic001G142400--Sobic007G201400 Sobic008G021700 Sobic008G021700 Sobic001G142400--Sobic008G021700 Sobic001G142400--Sobic001G236800 Sobic002G140000 Sobic002G140000 Sobic001G142400--Sobic002G140000 Sobic004G109000 Sobic004G109000 Sobic001G215300--Sobic004G109000 Sobic001G215300--Sobic001G142400 Sobic001G215300--Sobic002G064400 Sobic001G215300--Sobic002G190100 Sobic008G130700 Sobic008G130700 Sobic001G215300--Sobic008G130700 Sobic001G215300--Sobic001G236800 Sobic001G188600 Sobic001G188600 Sobic001G215300--Sobic001G188600 Sobic007G090415 Sobic007G090415 Sobic001G215300--Sobic007G090415 Sobic006G114300 Sobic006G114300 Sobic001G215300--Sobic006G114300 Sobic007G206100--Sobic002G064400 Sobic007G206100--Sobic001G236800 Sobic007G206100--Sobic008G008500 Sobic007G206100--Sobic002G190100 Sobic007G206100--Sobic004G246800 Sobic007G206100--Sobic001G142400 Sobic003G042100 Sobic003G042100 Sobic007G206100--Sobic003G042100 Sobic007G206100--Sobic004G151900 Sobic007G206100--Sobic001G215300 Sobic008G008500--Sobic002G064400 Sobic008G008500--Sobic009G083300 Sobic007G123200 Sobic007G123200 Sobic008G008500--Sobic007G123200 Sobic008G008500--Sobic008G130700 Sobic008G008500--Sobic002G190100 Sobic008G008500--Sobic007G090415 Sobic008G008500--Sobic001G142400 Sobic003G071600 Sobic003G071600 Sobic008G008500--Sobic003G071600 Sobic006G060500 Sobic006G060500 Sobic008G008500--Sobic006G060500 Sobic004G151900--Sobic008G021700 Sobic009G251300 Sobic009G251300 Sobic004G151900--Sobic009G251300 Sobic001G061600 Sobic001G061600 Sobic004G151900--Sobic001G061600 Sobic007G154800 Sobic007G154800 Sobic004G151900--Sobic007G154800 Sobic004G151900--Sobic004G246800 Sobic007G066050 Sobic007G066050 Sobic004G151900--Sobic007G066050 Sobic003G029300 Sobic003G029300 Sobic004G151900--Sobic003G029300 Sobic004G151900--Sobic001G142400 Sobic009G064766 Sobic009G064766 Sobic004G151900--Sobic009G064766 Sobic001G076200 Sobic001G076200 Sobic004G246800--Sobic001G076200 Sobic002G209600 Sobic002G209600 Sobic004G246800--Sobic002G209600 Sobic008G131700 Sobic008G131700 Sobic004G246800--Sobic008G131700 Sobic004G246800--Sobic008G021700 Sobic004G246800--Sobic005G022800 Sobic004G246800--Sobic004G151900 Sobic001G514100 Sobic001G514100 Sobic004G246800--Sobic001G514100 Sobic005G197300 Sobic005G197300 Sobic004G246800--Sobic005G197300 Sobic004G255500 Sobic004G255500 Sobic004G246800--Sobic004G255500 Sobic009G096100 Sobic009G096100 Sobic010G157700--Sobic009G096100 Sobic010G157700--Sobic001G236800 Sobic008G100400 Sobic008G100400 Sobic010G157700--Sobic008G100400 Sobic008G186500 Sobic008G186500 Sobic010G157700--Sobic008G186500 Sobic007G182600 Sobic007G182600 Sobic010G157700--Sobic007G182600 Sobic002G380100 Sobic002G380100 Sobic010G157700--Sobic002G380100 Sobic007G000400 Sobic007G000400 Sobic010G157700--Sobic007G000400 Sobic003G267000 Sobic003G267000 Sobic010G157700--Sobic003G267000 Sobic001G321400 Sobic001G321400 Sobic010G157700--Sobic001G321400
Octagon: transcription factors


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