Gene annotation
Transcriptome id Sobic.002G363500.2,Sobic.002G363500.3
Synonym Sb02g038320
Functional annotation RNA methyltransferase, TrmH family protein, putative, expressed
UniProt A0A1W0W789 , A0A1W0W748
Pfam PF00588
Panther DB PTHR12029 PTHR12029:SF45
NCBI CDD KOG0838; RNA Methylase, SpoU family
KEGG Orthology -
Gene Ontology GO:0008173; RNA methyltransferase activity GO:0006396RNA processing GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT5G15390 : tRNA/rRNA methyltransferase (SpoU) family protein
RAP-DB (Rice) LOC_Os07g40700.1,LOC_Os07g40700.2 : RNA methyltransferase, TrmH family protein, putative, expressed
MaizeGDB (Corn) Zm00025a048651
Brachypodium KQK15413
Barley HORVU2Hr1G034350.7 , HORVU2Hr1G034350.6 , HORVU2Hr1G034350.4 , HORVU2Hr1G034350.3 , HORVU2Hr1G034350.2 , HORVU2Hr1G034350.1
Wheat TraesCS2B02G208800 , TraesCS2D02G190000 , TraesCS2D02G190000 , TraesCS2A02G182300 , TraesCS2A02G182300 , TraesCS2A02G182300 , TraesCS2A02G182300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G281066 - -
2 Sobic.005G022000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Mpv17 / PMP22 family domain containing protein, expressed K13347: PXMP2, peroxisomal membrane protein 2
3 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
4 Sobic.001G437200 ATP-dependent Clp protease ATP-binding subunit, putative, expressed -
5 Sobic.001G104300 differentiation protein, putative, expressed K09761: 16S rRNA (uracil1498-N3)-methyltransferase
6 Sobic.003G298400 expressed protein -
7 Sobic.010G134500 exonuclease, putative, expressed -
8 Sobic.003G165800 UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphor yl-undecaprenol N-acetylglucosamine transferase, putative, expressed K02563: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
9 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
10 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase
11 Sobic.010G073700 chaperonin, putative, expressed K04078: groES, chaperonin GroES
12 Sobic.007G026200 heat shock protein DnaJ, putative, expressed -
13 Sobic.001G376700 blue-light photoreceptor PHR2, putative, expressed -
14 Sobic.001G389500 guanylate kinase, putative, expressed K00942: E2.7.4.8, guanylate kinase
15 Sobic.002G404900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA pseudouridine synthase, putative, expressed -
16 Sobic.003G420900 S-formylglutathione hydrolase, putative, expressed K01070: frmB, ESD, S-formylglutathione hydrolase
17 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
18 Sobic.004G214400 tic20, putative, expressed -
19 Sobic.010G216300 dihydrodipicolinate synthase, chloroplast precursor, putative, expressed K01714: 4-hydroxy-tetrahydrodipicolinate synthase
20 Sobic.007G116100 thioredoxin, putative, expressed -


Gene co-expression network
sample Sobic002G363500 Sobic002G363500 Sobic006G281066 Sobic006G281066 Sobic002G363500--Sobic006G281066 Sobic005G022000 Sobic005G022000 Sobic002G363500--Sobic005G022000 Sobic001G395300 Sobic001G395300 Sobic002G363500--Sobic001G395300 Sobic001G437200 Sobic001G437200 Sobic002G363500--Sobic001G437200 Sobic001G104300 Sobic001G104300 Sobic002G363500--Sobic001G104300 Sobic003G298400 Sobic003G298400 Sobic002G363500--Sobic003G298400 Sobic010G134500 Sobic010G134500 Sobic002G363500--Sobic010G134500 Sobic003G165800 Sobic003G165800 Sobic002G363500--Sobic003G165800 Sobic006G237100 Sobic006G237100 Sobic002G363500--Sobic006G237100 Sobic004G214400 Sobic004G214400 Sobic006G281066--Sobic004G214400 Sobic006G281066--Sobic001G104300 Sobic001G543700 Sobic001G543700 Sobic006G281066--Sobic001G543700 Sobic006G281066--Sobic002G363500 Sobic006G281066--Sobic001G395300 Sobic003G236300 Sobic003G236300 Sobic006G281066--Sobic003G236300 Sobic010G027200 Sobic010G027200 Sobic006G281066--Sobic010G027200 Sobic002G140000 Sobic002G140000 Sobic006G281066--Sobic002G140000 Sobic001G321400 Sobic001G321400 Sobic006G281066--Sobic001G321400 Sobic002G078000 Sobic002G078000 Sobic005G022000--Sobic002G078000 Sobic005G022000--Sobic001G104300 Sobic005G022000--Sobic002G363500 Sobic005G022000--Sobic006G281066 Sobic006G114300 Sobic006G114300 Sobic005G022000--Sobic006G114300 Sobic007G026200 Sobic007G026200 Sobic005G022000--Sobic007G026200 Sobic002G360200 Sobic002G360200 Sobic005G022000--Sobic002G360200 Sobic007G166600 Sobic007G166600 Sobic005G022000--Sobic007G166600 Sobic001G389500 Sobic001G389500 Sobic005G022000--Sobic001G389500 Sobic009G137000 Sobic009G137000 Sobic001G395300--Sobic009G137000 Sobic002G404900 Sobic002G404900 Sobic001G395300--Sobic002G404900 Sobic001G228300 Sobic001G228300 Sobic001G395300--Sobic001G228300 Sobic001G395300--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic001G395300--Sobic006G263800 Sobic001G395300--Sobic002G140000 Sobic006G204100 Sobic006G204100 Sobic001G395300--Sobic006G204100 Sobic007G116100 Sobic007G116100 Sobic001G395300--Sobic007G116100 Sobic001G395300--Sobic010G027200 Sobic001G437200--Sobic003G298400 Sobic001G437200--Sobic006G237100 Sobic003G310100 Sobic003G310100 Sobic001G437200--Sobic003G310100 Sobic001G437200--Sobic002G404900 Sobic009G131600 Sobic009G131600 Sobic001G437200--Sobic009G131600 Sobic001G424300 Sobic001G424300 Sobic001G437200--Sobic001G424300 Sobic001G445200 Sobic001G445200 Sobic001G437200--Sobic001G445200 Sobic003G286300 Sobic003G286300 Sobic001G437200--Sobic003G286300 Sobic001G161400 Sobic001G161400 Sobic001G437200--Sobic001G161400 Sobic001G104300--Sobic002G078000 Sobic001G104300--Sobic006G281066 Sobic001G104300--Sobic005G022000 Sobic001G104300--Sobic003G165800 Sobic004G070800 Sobic004G070800 Sobic001G104300--Sobic004G070800 Sobic001G013900 Sobic001G013900 Sobic001G104300--Sobic001G013900 Sobic003G333700 Sobic003G333700 Sobic001G104300--Sobic003G333700 Sobic001G104300--Sobic010G134500 Sobic004G109000 Sobic004G109000 Sobic001G104300--Sobic004G109000 Sobic003G298400--Sobic001G437200 Sobic003G298400--Sobic009G131600 Sobic003G298400--Sobic007G116100 Sobic003G298400--Sobic001G445200 Sobic003G298400--Sobic001G424300 Sobic003G298400--Sobic006G237100 Sobic002G156100 Sobic002G156100 Sobic003G298400--Sobic002G156100 Sobic001G375000 Sobic001G375000 Sobic003G298400--Sobic001G375000 Sobic010G073700 Sobic010G073700 Sobic003G298400--Sobic010G073700 Sobic009G210100 Sobic009G210100 Sobic010G134500--Sobic009G210100 Sobic010G134500--Sobic001G104300 Sobic010G134500--Sobic002G078000 Sobic007G070000 Sobic007G070000 Sobic010G134500--Sobic007G070000 Sobic003G267500 Sobic003G267500 Sobic010G134500--Sobic003G267500 Sobic003G420900 Sobic003G420900 Sobic010G134500--Sobic003G420900 Sobic010G134500--Sobic005G022000 Sobic010G134500--Sobic002G363500 Sobic010G134500--Sobic001G161400 Sobic003G165800--Sobic001G104300 Sobic002G141900 Sobic002G141900 Sobic003G165800--Sobic002G141900 Sobic003G165800--Sobic003G420900 Sobic001G021500 Sobic001G021500 Sobic003G165800--Sobic001G021500 Sobic001G441200 Sobic001G441200 Sobic003G165800--Sobic001G441200 Sobic003G165800--Sobic006G281066 Sobic003G165800--Sobic005G022000 Sobic009G055900 Sobic009G055900 Sobic003G165800--Sobic009G055900 Sobic003G165800--Sobic002G363500 Sobic001G281500 Sobic001G281500 Sobic006G237100--Sobic001G281500 Sobic006G237100--Sobic010G027200 Sobic006G237100--Sobic001G375000 Sobic006G237100--Sobic002G404900 Sobic006G237100--Sobic002G140000 Sobic006G237100--Sobic001G161400 Sobic006G237100--Sobic001G437200 Sobic006G237100--Sobic007G116100 Sobic006G237100--Sobic003G310100
Octagon: transcription factors


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